mRNA_H-elongata_contig20647.5906.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A6H5JA94_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA94_9PHAE) HSP 1 Score: 212 bits (540), Expect = 7.970e-58 Identity = 177/430 (41.16%), Postives = 201/430 (46.74%), Query Frame = 1
Query: 1 RVLRPKLEAFLPHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQR---------------DEVRATLHRKAGGDKEA---------------------GAEREVERT----KPSGYLRKRYRALVEVLPGRGPLRASTAPLIHFQKVSCRAPKMFSSDRP-QVMTVVEERL------GGDIEESWIECRLLVLSTRDA-----LPPLG---REGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHERSPSLQAPY--DRTPTLV----------------------------------------AQQAGADRGDL--KSSYLLGWGVEATDKGGELRRIGPDSFVASPGLALQAHHVSLEL----GNGVKHAFTLGRDTCWW 981
R +RP L+ LPHRLD DTSGLVIVAK + LR N+IIK PGL LQTG+ S R RR K K +R E + A + EA GAE T G + KRYRALVEVLPG PL+AS PL HFQKVS RAPK F DRP Q RL G D E SWIECRLLVLS +A + P G R G K GG QEVEV+LLTGRTHQIRGQLAAEGCPIYGD LYGP P+ A + TP +V A A A L + + G++A +G E G FV SP +ALQA H+SLEL G +HAFTL RDTCWW
Sbjct: 192 RGVRPGLDLLLPHRLDNDTSGLVIVAKGADTLRSINEIIKRPGLMLQTGDDSPRDRRRKNKALRRAAKLADGTANIKTPVSEEASMTEAAAATESEALPETPQVGRAIPPTQAFATGAGAEAAAAETGAVQNAVGAITKRYRALVEVLPGSSPLKASPIPLTHFQKVSRRAPKDFRRDRPPQPKATSNARLADTPGGGEDDEGSWIECRLLVLSASEASVSSVVTPAGFPTRTGDSIK--GGXXXXGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDNLYGPAVRETSPTGPAEPAATAAETTPAVVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVLRRSPAPAAAATEPGLVVEEEAVRQVGLQAGFQGDETSCRG--GFVESPKMALQACHISLELEAEDGGRERHAFTLARDTCWW 617
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: D7G4K2_ECTSI (Putative RNA pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K2_ECTSI) HSP 1 Score: 208 bits (529), Expect = 7.510e-57 Identity = 166/412 (40.29%), Postives = 188/412 (45.63%), Query Frame = 1
Query: 1 RVLRPKLEAFLPHRLDIDTSGLVIV----------------------AKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQR-------------------DEVRATLHRKAGGDKEAGAER-EVERTKPS--------------------------GYLRKRYRALVEVLPGRGPLRASTAPLIHFQKVSCRAPKMFSSDRPQVMTVVEERL-------GGDIEESWIECRLLVLSTRDA-LPPLGREGLRRKERGGEDQHDCGDR-----KFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHERSPSLQAPYDRTPTLVAQQAGADRGDLKSSYLLGWGVEATDKGGELRRIGPDSFVASPGLALQAHHVSLEL----GNGVKHAFTLGRDTCWW 981
R +RP L+ LPHRLDIDTSGLVIV AK LR N+IIK PGL L+TG S R RR K K +R AT A + EA E +V R P G + KRYRALV+VLPGR PL+AS P+ HFQKVS RAPK F DRP G D E SWIECRLLVLS +A + P+ GG + GD QEVEV+LLTGRTHQIRGQLAAEGCPIYGD+LYGP R P LQA + R D D +S FV SP +ALQA H+SLEL G +H FTL RDTCWW
Sbjct: 168 RSVRPDLDLLLPHRLDIDTSGLVIVVTRNLGVQELGLARNRTKHAGRAKGAGTLRSINEIIKRPGLILRTGIDSPRDRRRKNKALRRAAKLTNGTANIKTPVYQEASMTAATAASAAAAESEALPETSQVGRAIPPTQAFATGAGXXXXXXXAETGAVENAVGAITKRYRALVQVLPGRSPLKASPIPMTHFQKVSRRAPKEFRRDRPPQPNATSNARSADTPGGGEDDEGSWIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGGIGDGGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPAE--ESVRQPGLQAGFQR-----------DENDSRSG-----------------------FVESPKMALQASHISLELEAEDGRRERHVFTLARDTCWW 543
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A7S4AGN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGN3_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.300e-13 Identity = 82/244 (33.61%), Postives = 111/244 (45.49%), Query Frame = 1
Query: 25 AFLPHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALVEVLPG------RGPLRASTAPLIHFQKVSCRAPKMFSSDRPQVMTVV---EERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRKER---------GGE----DQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLY 690
A LP RLD +TSGL+++A N + + + LE +T + A A + T++ + AT A D R + S ++KRYR LV G R + + + HF + +APK F +D M + G + W+ CRL + S + P R LR R GGE Q D E+E+ELLTGRTHQIRGQLAA GCPI GD LY
Sbjct: 194 ASLPQRLDTETSGLIVIATNPKTASYFSKL-----LERKTAD----AVTAIQATTKEKAIAATDTAVAAADVSLSLS-SASRLQTS--IQKRYRCLVSFSSGEAWDSIRKRYQEPGSIVEHFVDANSKAPKTFVADTNHNMVGGGDDHDHDNGSKKRRWLLCRLRIRSMSPPMIPQQRLQLREYVRVPQVVPPPAGGETVSVSQADSQTACCSELEIELLTGRTHQIRGQLAALGCPIVGDPLY 425
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: L1IMI1_GUITC (PseudoU_synth_2 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IMI1_GUITC) HSP 1 Score: 68.9 bits (167), Expect = 4.670e-9 Identity = 46/140 (32.86%), Postives = 67/140 (47.86%), Query Frame = 1
Query: 301 YRALVEVLPGRGPLRASTAPLIHFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLS---------TRDALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
Y+ALV P G L +H+ + S R+PK+ + E W+ECRL+V S + A L ++ R E+ + + D + EV +EL+TGRTHQIR Q+A GCP+ GD +YG
Sbjct: 102 YKALVLGHPPLGEL-------VHYMEPSKRSPKVLDTAA---------------REGWLECRLVVKSASRRETASLSERAASVLQQQSRVRDEKQADAEEDKSPLEVYEVRIELITGRTHQIRAQMAFAGCPVVGDEMYG 219
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A448Z0B5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0B5_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 9.610e-9 Identity = 77/250 (30.80%), Postives = 102/250 (40.80%), Query Frame = 1
Query: 25 AFLPHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALVEVLPGRG--PLRASTAP---LIHFQKVSCRAPKMFSSDRPQVMT----------------VVEERLGGDIEESWIECRLLVLST------RDALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
A LP RLD DTSGL++VA N+ ++ RKT+ A AGG E+ ++ +P G ++KRYR LV R+ + HF + PK F D P ++R+ + W CRL V S + LP + G +R + R E+E+ELLTGRTHQIRGQLAA GCPI GD LYG
Sbjct: 1047 ATLPQRLDTDTSGLILVATNKSAASYFCKLLA-------------------RKTTD-----ALQPSSAGGSVESN-----DQNRPVGSIQKRYRCLVSFSSDTAWDSFRSQHGDGRIVEHFVDANADTPKPFV-DVPXXXXXXXXXXXXXXXXXXXXAAKDRV---LTSRWQSCRLRVRSATAPVAIQTPLPGVHAGGSQRPPQXXX-XXXXRLRLCSELEIELLTGRTHQIRGQLAALGCPIVGDALYG 1262
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: B8LDC7_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDC7_THAPS) HSP 1 Score: 69.3 bits (168), Expect = 9.720e-9 Identity = 78/247 (31.58%), Postives = 105/247 (42.51%), Query Frame = 1
Query: 34 PHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALVEVLPGRGPLRASTA-------------------PLIHFQKVSCRAPKMFSSDRPQVMTVVEERLGGDI--EESWIECRLLVLSTRDALPPLGREGLRRK------ERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
P RLD +TSGL++VA + S A+ + KTS + V + K+ +A AE + R+ G + K YR LV V+P + T+ + HF + S RAPK F S P+ D+ ESW EC L + + D +G + E G D+ E+EVELLTGRTHQIRGQLAAEG P+ GD YG
Sbjct: 349 PQRLDQNTSGLLVVASKKSFA-------------------SYFAKLLRTKTSGQL-VTCRIESKS----DANAEEKYYRSSSCG-VHKTYRCLVCVMPSKSSSADDTSIKSMKSEVERLRKYSRERTVVRHFLEPSIRAPKAFFSTVPK-----------DVYNPESWAECLLRITNVSDICTVVGNKPSDELAVSLWGESGKPDECVA----VVELEVELLTGRTHQIRGQLAAEGFPLVGDAQYG 555
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A448Z5R8_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5R8_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.460e-8 Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 1
Query: 367 HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRK------------ERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLP 711
H+ K S RAPK+F P E GD + W EC + + + +P + ++R + G + + + EVEV L+TGRTHQIRGQL+ G PI GD YG LP
Sbjct: 514 HYLKASDRAPKLFVDTLP-------EEANGDDDSKWYECLMEITDVGEPIPLFSSDSIQRGGPADGLWPKAAIDGGFQSRIPPNTKAVAEVEVSLITGRTHQIRGQLSKLGYPIVGDEQYGGALQLP 633
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A1Z5J8W1_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8W1_FISSO) HSP 1 Score: 67.8 bits (164), Expect = 2.800e-8 Identity = 65/231 (28.14%), Postives = 97/231 (41.99%), Query Frame = 1
Query: 34 PHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALV--------EVLPGRGPLRASTAPLI-HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRD--ALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
P RLD +TSGL++V+ ++ D+++ KT+ + EV T + D Y+ K+YR LV +L L+ +I H+ + S RAPK F ++ + +W+EC L + T D AL G+E + + E+E+ELLTGRTHQ+RGQL+A G PI GD YG
Sbjct: 221 PQRLDQNTSGLLVVSTSKVFANYYADLLR-------------------HKTALQLEVNQTQETEHFRD----------------YIHKKYRCLVCLQEDDDRSILEAARELQQLRGSIIRHYLEPSIRAPKHFVAET--------------FDSAWLECLLRITGTSDVYALVGHGQELANNLWSCPAEDRPPSCQAVMELEIELLTGRTHQVRGQLSAMGFPIVGDTQYG 402
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A7S0Y7Y0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7Y0_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 4.690e-8 Identity = 53/152 (34.87%), Postives = 68/152 (44.74%), Query Frame = 1
Query: 289 LRKRYRALVEVLPGRGPLRASTAPLI-------HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHERS 723
++KRYR LV + G + S + I H+ + +APK F S + + G W C+L + RD P C E+E+ELLTGRTHQIRGQLAA GCPI GD LYG L + RS
Sbjct: 20 IQKRYRCLVALQKGSQEIMDSLSGYIRSKSIVEHYVDANSKAPKTFVS-------AISQNNGAS---KWQLCKLRI---RDMRPTCDA---------------C-----LELEIELLTGRTHQIRGQLAALGCPIVGDPLYGKNTLQRNNRS 138
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: K0TC93_THAOC (PseudoU_synth_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TC93_THAOC) HSP 1 Score: 65.9 bits (159), Expect = 1.240e-7 Identity = 54/153 (35.29%), Postives = 66/153 (43.14%), Query Frame = 1
Query: 289 LRKRYRALVEVLPGRGPLRASTAPLI-------HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEES-WIECRLLVLSTRDALPPLGREGLRRKERG--GEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHE 717
+ K YR LV + PG AS + H+ + S RAPK F +D P D E + W E L + +G E G G E+E+ELLTGRTHQIRGQLAAEG P+ GD YG P E
Sbjct: 394 VHKAYRCLVCLSPGAESSMASEVKKLKDYGIMRHYLEPSIRAPKRFLADIPH-----------DAESAAWAESLLTITRVGQVCTVVGNEPSETLSENLWGIHGRPQGCIAVCELEIELLTGRTHQIRGQLAAEGFPLVGDVQYGGAVAQPTE 535 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20647.5906.1 >prot_H-elongata_contig20647.5906.1 ID=prot_H-elongata_contig20647.5906.1|Name=mRNA_H-elongata_contig20647.5906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp MFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRKback to top mRNA from alignment at H-elongata_contig20647:215..4395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20647.5906.1 ID=mRNA_H-elongata_contig20647.5906.1|Name=mRNA_H-elongata_contig20647.5906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4181bp|location=Sequence derived from alignment at H-elongata_contig20647:215..4395+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20647:215..4395+ >mRNA_H-elongata_contig20647.5906.1 ID=mRNA_H-elongata_contig20647.5906.1|Name=mRNA_H-elongata_contig20647.5906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig20647:215..4395+ (Himanthalia elongata Himel1 dioecious)back to top |