mRNA_H-elongata_contig20647.5906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20647.5906.1
Unique NamemRNA_H-elongata_contig20647.5906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A6H5JA94_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA94_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 7.970e-58
Identity = 177/430 (41.16%), Postives = 201/430 (46.74%), Query Frame = 1
Query:    1 RVLRPKLEAFLPHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQR---------------DEVRATLHRKAGGDKEA---------------------GAEREVERT----KPSGYLRKRYRALVEVLPGRGPLRASTAPLIHFQKVSCRAPKMFSSDRP-QVMTVVEERL------GGDIEESWIECRLLVLSTRDA-----LPPLG---REGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHERSPSLQAPY--DRTPTLV----------------------------------------AQQAGADRGDL--KSSYLLGWGVEATDKGGELRRIGPDSFVASPGLALQAHHVSLEL----GNGVKHAFTLGRDTCWW 981
            R +RP L+  LPHRLD DTSGLVIVAK  + LR  N+IIK PGL LQTG+ S R RR K K  +R                E  +     A  + EA                     GAE     T       G + KRYRALVEVLPG  PL+AS  PL HFQKVS RAPK F  DRP Q       RL      G D E SWIECRLLVLS  +A     + P G   R G   K  GG           QEVEV+LLTGRTHQIRGQLAAEGCPIYGD LYGP         P+  A    + TP +V                                        A  A A    L  +   +   G++A  +G E    G   FV SP +ALQA H+SLEL    G   +HAFTL RDTCWW
Sbjct:  192 RGVRPGLDLLLPHRLDNDTSGLVIVAKGADTLRSINEIIKRPGLMLQTGDDSPRDRRRKNKALRRAAKLADGTANIKTPVSEEASMTEAAAATESEALPETPQVGRAIPPTQAFATGAGAEAAAAETGAVQNAVGAITKRYRALVEVLPGSSPLKASPIPLTHFQKVSRRAPKDFRRDRPPQPKATSNARLADTPGGGEDDEGSWIECRLLVLSASEASVSSVVTPAGFPTRTGDSIK--GGXXXXGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDNLYGPAVRETSPTGPAEPAATAAETTPAVVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFVLRRSPAPAAAATEPGLVVEEEAVRQVGLQAGFQGDETSCRG--GFVESPKMALQACHISLELEAEDGGRERHAFTLARDTCWW 617          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: D7G4K2_ECTSI (Putative RNA pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K2_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.510e-57
Identity = 166/412 (40.29%), Postives = 188/412 (45.63%), Query Frame = 1
Query:    1 RVLRPKLEAFLPHRLDIDTSGLVIV----------------------AKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQR-------------------DEVRATLHRKAGGDKEAGAER-EVERTKPS--------------------------GYLRKRYRALVEVLPGRGPLRASTAPLIHFQKVSCRAPKMFSSDRPQVMTVVEERL-------GGDIEESWIECRLLVLSTRDA-LPPLGREGLRRKERGGEDQHDCGDR-----KFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHERSPSLQAPYDRTPTLVAQQAGADRGDLKSSYLLGWGVEATDKGGELRRIGPDSFVASPGLALQAHHVSLEL----GNGVKHAFTLGRDTCWW 981
            R +RP L+  LPHRLDIDTSGLVIV                      AK    LR  N+IIK PGL L+TG  S R RR K K  +R                       AT    A  + EA  E  +V R  P                           G + KRYRALV+VLPGR PL+AS  P+ HFQKVS RAPK F  DRP                 G D E SWIECRLLVLS  +A + P+          GG  +   GD        QEVEV+LLTGRTHQIRGQLAAEGCPIYGD+LYGP       R P LQA + R           D  D +S                        FV SP +ALQA H+SLEL    G   +H FTL RDTCWW
Sbjct:  168 RSVRPDLDLLLPHRLDIDTSGLVIVVTRNLGVQELGLARNRTKHAGRAKGAGTLRSINEIIKRPGLILRTGIDSPRDRRRKNKALRRAAKLTNGTANIKTPVYQEASMTAATAASAAAAESEALPETSQVGRAIPPTQAFATGAGXXXXXXXAETGAVENAVGAITKRYRALVQVLPGRSPLKASPIPMTHFQKVSRRAPKEFRRDRPPQPNATSNARSADTPGGGEDDEGSWIECRLLVLSASEASVSPVVTSAGFPSRTGGSIKGGIGDGGVSTGMLQEVEVQLLTGRTHQIRGQLAAEGCPIYGDYLYGPAE--ESVRQPGLQAGFQR-----------DENDSRSG-----------------------FVESPKMALQASHISLELEAEDGRRERHVFTLARDTCWW 543          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A7S4AGN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AGN3_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.300e-13
Identity = 82/244 (33.61%), Postives = 111/244 (45.49%), Query Frame = 1
Query:   25 AFLPHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALVEVLPG------RGPLRASTAPLIHFQKVSCRAPKMFSSDRPQVMTVV---EERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRKER---------GGE----DQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLY 690
            A LP RLD +TSGL+++A N +     + +     LE +T +    A  A + T++   + AT    A  D          R + S  ++KRYR LV    G      R   +   + + HF   + +APK F +D    M       +   G  +  W+ CRL + S    + P  R  LR   R         GGE     Q D       E+E+ELLTGRTHQIRGQLAA GCPI GD LY
Sbjct:  194 ASLPQRLDTETSGLIVIATNPKTASYFSKL-----LERKTAD----AVTAIQATTKEKAIAATDTAVAAADVSLSLS-SASRLQTS--IQKRYRCLVSFSSGEAWDSIRKRYQEPGSIVEHFVDANSKAPKTFVADTNHNMVGGGDDHDHDNGSKKRRWLLCRLRIRSMSPPMIPQQRLQLREYVRVPQVVPPPAGGETVSVSQADSQTACCSELEIELLTGRTHQIRGQLAALGCPIVGDPLY 425          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: L1IMI1_GUITC (PseudoU_synth_2 domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IMI1_GUITC)

HSP 1 Score: 68.9 bits (167), Expect = 4.670e-9
Identity = 46/140 (32.86%), Postives = 67/140 (47.86%), Query Frame = 1
Query:  301 YRALVEVLPGRGPLRASTAPLIHFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLS---------TRDALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
            Y+ALV   P  G L       +H+ + S R+PK+  +                  E W+ECRL+V S         +  A   L ++   R E+  + + D    +  EV +EL+TGRTHQIR Q+A  GCP+ GD +YG
Sbjct:  102 YKALVLGHPPLGEL-------VHYMEPSKRSPKVLDTAA---------------REGWLECRLVVKSASRRETASLSERAASVLQQQSRVRDEKQADAEEDKSPLEVYEVRIELITGRTHQIRAQMAFAGCPVVGDEMYG 219          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A448Z0B5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z0B5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.610e-9
Identity = 77/250 (30.80%), Postives = 102/250 (40.80%), Query Frame = 1
Query:   25 AFLPHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALVEVLPGRG--PLRASTAP---LIHFQKVSCRAPKMFSSDRPQVMT----------------VVEERLGGDIEESWIECRLLVLST------RDALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
            A LP RLD DTSGL++VA N+        ++                    RKT+      A     AGG  E+      ++ +P G ++KRYR LV           R+       + HF   +   PK F  D P                      ++R+   +   W  CRL V S       +  LP +   G +R  +          R   E+E+ELLTGRTHQIRGQLAA GCPI GD LYG
Sbjct: 1047 ATLPQRLDTDTSGLILVATNKSAASYFCKLLA-------------------RKTTD-----ALQPSSAGGSVESN-----DQNRPVGSIQKRYRCLVSFSSDTAWDSFRSQHGDGRIVEHFVDANADTPKPFV-DVPXXXXXXXXXXXXXXXXXXXXAAKDRV---LTSRWQSCRLRVRSATAPVAIQTPLPGVHAGGSQRPPQXXX-XXXXRLRLCSELEIELLTGRTHQIRGQLAALGCPIVGDALYG 1262          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: B8LDC7_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LDC7_THAPS)

HSP 1 Score: 69.3 bits (168), Expect = 9.720e-9
Identity = 78/247 (31.58%), Postives = 105/247 (42.51%), Query Frame = 1
Query:   34 PHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALVEVLPGRGPLRASTA-------------------PLIHFQKVSCRAPKMFSSDRPQVMTVVEERLGGDI--EESWIECRLLVLSTRDALPPLGREGLRRK------ERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
            P RLD +TSGL++VA  +                      S  A+  + KTS +  V   +  K+    +A AE +  R+   G + K YR LV V+P +      T+                    + HF + S RAPK F S  P+           D+   ESW EC L + +  D    +G +           E G  D+         E+EVELLTGRTHQIRGQLAAEG P+ GD  YG
Sbjct:  349 PQRLDQNTSGLLVVASKKSFA-------------------SYFAKLLRTKTSGQL-VTCRIESKS----DANAEEKYYRSSSCG-VHKTYRCLVCVMPSKSSSADDTSIKSMKSEVERLRKYSRERTVVRHFLEPSIRAPKAFFSTVPK-----------DVYNPESWAECLLRITNVSDICTVVGNKPSDELAVSLWGESGKPDECVA----VVELEVELLTGRTHQIRGQLAAEGFPLVGDAQYG 555          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A448Z5R8_9STRA (PseudoU_synth_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5R8_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.460e-8
Identity = 43/127 (33.86%), Postives = 59/127 (46.46%), Query Frame = 1
Query:  367 HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRK------------ERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLP 711
            H+ K S RAPK+F    P       E   GD +  W EC + +    + +P    + ++R             + G + +     +   EVEV L+TGRTHQIRGQL+  G PI GD  YG    LP
Sbjct:  514 HYLKASDRAPKLFVDTLP-------EEANGDDDSKWYECLMEITDVGEPIPLFSSDSIQRGGPADGLWPKAAIDGGFQSRIPPNTKAVAEVEVSLITGRTHQIRGQLSKLGYPIVGDEQYGGALQLP 633          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A1Z5J8W1_FISSO (PseudoU_synth_2 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8W1_FISSO)

HSP 1 Score: 67.8 bits (164), Expect = 2.800e-8
Identity = 65/231 (28.14%), Postives = 97/231 (41.99%), Query Frame = 1
Query:   34 PHRLDIDTSGLVIVAKNREVLRVANDIIKGPGLELQTGERSQRARRAKRKTSQRDEVRATLHRKAGGDKEAGAEREVERTKPSGYLRKRYRALV--------EVLPGRGPLRASTAPLI-HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRD--ALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYG 693
            P RLD +TSGL++V+ ++       D+++                    KT+ + EV  T   +   D                Y+ K+YR LV         +L     L+     +I H+ + S RAPK F ++                + +W+EC L +  T D  AL   G+E          +      +   E+E+ELLTGRTHQ+RGQL+A G PI GD  YG
Sbjct:  221 PQRLDQNTSGLLVVSTSKVFANYYADLLR-------------------HKTALQLEVNQTQETEHFRD----------------YIHKKYRCLVCLQEDDDRSILEAARELQQLRGSIIRHYLEPSIRAPKHFVAET--------------FDSAWLECLLRITGTSDVYALVGHGQELANNLWSCPAEDRPPSCQAVMELEIELLTGRTHQVRGQLSAMGFPIVGDTQYG 402          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: A0A7S0Y7Y0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7Y0_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.690e-8
Identity = 53/152 (34.87%), Postives = 68/152 (44.74%), Query Frame = 1
Query:  289 LRKRYRALVEVLPGRGPLRASTAPLI-------HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRKERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHERS 723
            ++KRYR LV +  G   +  S +  I       H+   + +APK F S        + +  G      W  C+L +   RD  P                   C      E+E+ELLTGRTHQIRGQLAA GCPI GD LYG   L  + RS
Sbjct:   20 IQKRYRCLVALQKGSQEIMDSLSGYIRSKSIVEHYVDANSKAPKTFVS-------AISQNNGAS---KWQLCKLRI---RDMRPTCDA---------------C-----LELEIELLTGRTHQIRGQLAALGCPIVGDPLYGKNTLQRNNRS 138          
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Match: K0TC93_THAOC (PseudoU_synth_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TC93_THAOC)

HSP 1 Score: 65.9 bits (159), Expect = 1.240e-7
Identity = 54/153 (35.29%), Postives = 66/153 (43.14%), Query Frame = 1
Query:  289 LRKRYRALVEVLPGRGPLRASTAPLI-------HFQKVSCRAPKMFSSDRPQVMTVVEERLGGDIEES-WIECRLLVLSTRDALPPLGREGLRRKERG--GEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPVALLPHE 717
            + K YR LV + PG     AS    +       H+ + S RAPK F +D P            D E + W E  L +         +G E          G      G     E+E+ELLTGRTHQIRGQLAAEG P+ GD  YG     P E
Sbjct:  394 VHKAYRCLVCLSPGAESSMASEVKKLKDYGIMRHYLEPSIRAPKRFLADIPH-----------DAESAAWAESLLTITRVGQVCTVVGNEPSETLSENLWGIHGRPQGCIAVCELEIELLTGRTHQIRGQLAAEGFPLVGDVQYGGAVAQPTE 535          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20647.5906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA94_9PHAE7.970e-5841.16PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D7G4K2_ECTSI7.510e-5740.29Putative RNA pseudouridylate synthase n=1 Tax=Ecto... [more]
A0A7S4AGN3_9STRA4.300e-1333.61Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
L1IMI1_GUITC4.670e-932.86PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A448Z0B5_9STRA9.610e-930.80Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
B8LDC7_THAPS9.720e-931.58Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A448Z5R8_9STRA1.460e-833.86PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A1Z5J8W1_FISSO2.800e-828.14PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7S0Y7Y0_9STRA4.690e-834.87Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
K0TC93_THAOC1.240e-735.29PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20647contigH-elongata_contig20647:215..4395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue4.7e-10
Seed eggNOG ortholog227086.JGI_V11_80873
EggNOG free text desc.GTPase activator activity
EggNOG OGsKOG4270@1,KOG4270@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-07_000310.1
Exons6
Model size1560
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20647.5906.1prot_H-elongata_contig20647.5906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20647 1923..3843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.9100819-UTR-H-elongata_contig20647:214..2901622930154.9100819-UTR-H-elongata_contig20647:214..290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 215..290 +
1691679302.0771532-UTR-H-elongata_contig20647:214..2901691679302.0771532-UTR-H-elongata_contig20647:214..290Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 215..290 +
1622930154.926956-UTR-H-elongata_contig20647:547..6121622930154.926956-UTR-H-elongata_contig20647:547..612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 548..612 +
1691679302.0911741-UTR-H-elongata_contig20647:547..6121691679302.0911741-UTR-H-elongata_contig20647:547..612Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 548..612 +
1622930154.9428027-UTR-H-elongata_contig20647:1254..14311622930154.9428027-UTR-H-elongata_contig20647:1254..1431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 1255..1431 +
1691679302.1017175-UTR-H-elongata_contig20647:1254..14311691679302.1017175-UTR-H-elongata_contig20647:1254..1431Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 1255..1431 +
1622930154.9608738-UTR-H-elongata_contig20647:1841..19221622930154.9608738-UTR-H-elongata_contig20647:1841..1922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 1842..1922 +
1691679302.1098056-UTR-H-elongata_contig20647:1841..19221691679302.1098056-UTR-H-elongata_contig20647:1841..1922Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 1842..1922 +
1622930155.0160053-UTR-H-elongata_contig20647:3843..43951622930155.0160053-UTR-H-elongata_contig20647:3843..4395Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 3844..4395 +
1691679302.1426353-UTR-H-elongata_contig20647:3843..43951691679302.1426353-UTR-H-elongata_contig20647:3843..4395Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20647 3844..4395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.972784-CDS-H-elongata_contig20647:1922..19761622930154.972784-CDS-H-elongata_contig20647:1922..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20647 1923..1976 +
1691679302.1175406-CDS-H-elongata_contig20647:1922..19761691679302.1175406-CDS-H-elongata_contig20647:1922..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20647 1923..1976 +
1622930154.9872468-CDS-H-elongata_contig20647:2476..26291622930154.9872468-CDS-H-elongata_contig20647:2476..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20647 2477..2629 +
1691679302.1279533-CDS-H-elongata_contig20647:2476..26291691679302.1279533-CDS-H-elongata_contig20647:2476..2629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20647 2477..2629 +
1622930155.0043187-CDS-H-elongata_contig20647:3441..38431622930155.0043187-CDS-H-elongata_contig20647:3441..3843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20647 3442..3843 +
1691679302.135358-CDS-H-elongata_contig20647:3441..38431691679302.135358-CDS-H-elongata_contig20647:3441..3843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20647 3442..3843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20647.5906.1

>prot_H-elongata_contig20647.5906.1 ID=prot_H-elongata_contig20647.5906.1|Name=mRNA_H-elongata_contig20647.5906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
MFSSDRPQVMTVVEERLGGDIEESWIECRLLVLSTRDALPPLGREGLRRK
ERGGEDQHDCGDRKFQEVEVELLTGRTHQIRGQLAAEGCPIYGDFLYGPV
ALLPHERSPSLQAPYDRTPTLVAQQAGADRGDLKSSYLLGWGVEATDKGG
ELRRIGPDSFVASPGLALQAHHVSLELGNGVKHAFTLGRDTCWWSIADGP
PR*
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mRNA from alignment at H-elongata_contig20647:215..4395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20647.5906.1 ID=mRNA_H-elongata_contig20647.5906.1|Name=mRNA_H-elongata_contig20647.5906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4181bp|location=Sequence derived from alignment at H-elongata_contig20647:215..4395+ (Himanthalia elongata Himel1 dioecious)
AGGGTTTTAAGGCCTAAACTGGAGGCGTTTCTGCCGCACCGGCTGGATAT CGACACATCCGGGCTTGTTATTGTCGGTGAGCACCGACGAAGGCTCTAGA TGATGATCCGCCTACTATGACTTGTGCGCCGATAGTGCGGGGGAGAACCA TTCGCTCGTTTTGGGGTATTTAGATATTTAAGAAGATATTTTTACGCTGG TGACTCGAGGGCGGTCGGACGTTGCCAAAAACGTCTGGAGACCAGGTGAA CGATTGCATCACATCATCCGGCCGCCGCCCCGAGAATCTCACCGCCGCTT GAATCTTTTCTTGTTTGTTCTTATAAACGCCAGCGAAGAACCGCGAAGTC CTCCGCGTCGCCAACGATATAATCAAGGGACCGGGGTTAGAACTTCAGGT GAAGAATGAGTGGTCAGGTAGACTAGCCTACCTGCTTGTTGGAAAAATTT GCTGAATACAAATTTTCTAGCAAAAACCTCGCATTCTACTGCCGCCTTTG GTTTTATGATTCTGAACCGGCGGTTCCATCTGCCCTTTGAAATGGCTCTC TTTTTGGTTTATATCCCCCCCCCACTTTCACGGTTCAATATAGGCAGCCT ACTTTGTGTAGCCTTACCCTGCCCCCTACAGGCACGGTGGAGCCTCGGTG GAGCATGAATTGAGATCAAGTGGGTTCGTAGTCCTTCACTGCTTCTCAGG ATATGTACCACAACACATGGTATTTCATTCACTTCTCGAGACTTTTAAAT GCATTCGGTGGTGACGAATTCTGCAGAAACGAAGGGTAGACCAAGAGCAT CGTACAACGCGTCCCCCCTAACCTTGTGGTTTCAGATTCCGCTCGCTCCA CCTATCAGTCACGCGTCAAAGTTTGCTCTGGCCGCAAGGGTGATACCAAC GTACGCTCGAGAGCCGCGTCTTAAATCAGCAATTGAATCTTCGCAGGGGG GAGACTAGGGAGAGGGGAGAACCTTAAGCGCAAATTTCAAGTTTCACGTC ATCCCCCCTAACTACCTTTTGCACATTTGACATTCGATAGACCGGAGAGC GTTCGCAGCGCGCGCGCCGGGCGAAGAGGAAGACATCACAGCGCGATGAA GTTCGCGCCACCCTACATAGGAAAGCGGGAGGGGACAAAGAAGCGGGCGC CGAGAGAGAGGTCGAGAGGACGAAACCGTCCGGGTATCTCAGGAAGCGGT ACCGAGCGTTAGTGGAGGTGAGCTCGAGTGCCAAGCAGAACTGAACCTTA ACATCCCCACGTCGCCGCAGGCAAACTGATGTTTCTTGGGGGTGCATCCT TGATGGGTAGTGTGTCCTATCCACATCGCCCATCAGGGAGCGCAATTGAC GTTTATCTGTGGTGGGTTACGAAATAGGATCCCCCGATCCAATCTTTTCT GCTGGATGCGCCAGGCAGGAATGCACTGTGCGTGGCATAAGACGATCCCC CGATCCCGCCTGTGGTCTCCTGAAAACTGGAAGGCTGTATGGAAACTATG AAAAGCAGCGTTGCGAAATGGAAGGATGCTCCTCAATCTACAGTACCCAA CTAAAATTACTGCTAATTTGGAAGTGTAAAACCCGAACTGTCGAATAAAA ATAGAGGAAAACATGTGCCGGCGGCAGGTTTTACCCGGGCGTGGCCCTCT GCGAGCTTCTACTGCCCCCCTGATCCATTTCCAGAAAGTGTCGTGCCGAG CCCCGAAGATGTTCAGCTCCGATCGGCCGCAGGTGATGACCGTGGTCGAG GAACGGCTGGGGGTAACGTAATATACAACACATAAAAGTCATCTGCTGGT AACAAGAACGCCAGGCAGGCTGTCGGCCGTAGGGTGTTATGTGTGGAGCA GCGCACCACGAGGTAGTCAGGACCATTTATTTCTTGGTGGGTCCGTTTAC TGTGTTTTTGATCGGACTGGCTCTCTGGTTTTCGGCTATCGGGGCTCGCT TCATTGATGTGGTCGGTCGATTCACAGCTGTGCGTGGCCTTCAGGGGAAA TATTCAGGAGGCTTAAAGAGGCCGGTAGGTAGCTAGCTAGCTGTGTGTAC TATCAAATCTTTAGGGTGTTCCTGTGGCCTCCACTAGAATTAAAGGCACT TCTGAAACTGTGGGTGGTTCCCGAGAGTCCCAGCATACTCTATTCTCATC GCTCGTTCTACCGAGATCATCCGAGTTTTTAGAGAGGAAGAATGACTTGG GGGTAACCTAAAGGCCGCGGTTGGATTGTTGCGCCTGATTGCGGCTGCGT GTGCCTGATTAGGGTGACATAGAAGAATCGTGGATCGAGTGCCGGTTGTT GGTGCTATCAACGAGGGACGCGCTCCCGCCGCTAGGGCGAGAAGGGCTCC GCCGGAAGGAACGGGGGGGCGAAGACCAGCACGATTGCGGCGATCGCAAA TTTCAAGAGGTAGAGGTACGGTACAGTTCAAACCCGGGCCGCAATGAATT TCCGGGGTGAATATCTCAACCAGCCGTTTCTTTTCTAATAGACTTACCTC TATCTTAGAAGTGCCCATTAATTTTACAGAGATCATTCGATTCCCCAAAC TCTATATCTTCACGATGGGCGTTTGACATTGTGTACCGTAGCAGCTGTTT GGTAAAGAGAAGATAATGATATACAATCACAGTAAATTGCTGCCACTGGA GTTCTAGTTTACATGACACACCTGTAAGAACAGTTCCCTGCGATTATATC GGCCACGCTCTATGTATCTACGACTGGGTTATATATCTTGTAGGTTTCAT TACCGATCCGATGGCTTACGGTAGTTTATCCTTAAGTATGGTAGTTTTCC GTAGAGGTGTTTCCCCCACTTCAATACCTTGATGTCTGGACGAAGTCTCT AATGGCGCAGCCTGCTCACCCGGCATCTGGCGGCGCCATGTGCGCCGATG ATCGTCCCGCTACGCTCTGTATATTTCAGCGTTTGCATCACGTCATTCAT GGACGAAGCTGTGGAGGCCAACATTGTCTCTAAAGGCAGTAGCACTCAAT TTTCCAAGTTTTAGCCGATAAAAATTAACTATTTTGAGCACCAGTAATCA TGATACACGGTGTGTAAGATCTTTTAAGTCCCTACATGCCCTTAGGCGTC ATATTTGTCGTTTTCTTTCTCAAGGGAACTGCACTGCCCCGCCGTTACGC AGTCACAACCATCAACGACCTGACCCTTAGACCGCTTCGACAGTCTTAAG AATGCAGCTAAACGCGTATGATCGCAGGTGGAGTTATTAACGGGCAGGAC ACATCAGATTCGAGGGCAGCTCGCCGCGGAAGGCTGCCCGATCTACGGAG ACTTCTTGTACGGGCCAGTTGCTCTCCTACCACATGAACGATCGCCATCT CTTCAGGCTCCCTACGATCGAACGCCGACGCTGGTTGCACAGCAGGCTGG TGCAGACCGCGGCGACCTCAAGAGTAGTTATCTCCTCGGTTGGGGCGTCG AGGCCACGGATAAAGGCGGCGAATTGCGACGGATTGGACCCGACAGCTTC GTGGCGAGTCCTGGGTTAGCTCTGCAGGCACATCACGTTTCTCTTGAGCT GGGGAACGGGGTGAAGCACGCGTTTACGCTGGGTAGAGACACGTGCTGGT GGTCGATTGCGGATGGTCCGCCACGATGATCTCGCGAGCGGGCTCGGTAT TTACCTCGCAGTCCTAGCTTTGTTCTCGGTGGCCCCAGAAAACGTCGACG CTCCAGGTAGAGCGAGGCCGCGCTCGTCAGCCAGGCGTGGCATTGCGCTA AATTTGCCCGGAAAATCATTATATATGGCGACAGATCCTGTAATAACCAG GTTAGATCGCAAAGGTTTTAACACGGGCACAATATTTAGGGTCGCTTGAA GTCTGACGTTTATTTTTTACAGAAAATTGGCGTAAGAAGTGCCCGGTCGA CGCGAATGAAAAGTGGCAATGATAATGTGATGCGGTGTACAAAAGCACTA CAACAACACCGACAGGGAGGTTCCTTCCCGTGGGTGGTGAATATAATTAA ATACGGTACTATAATAGTGAGATAATCACATTCTGTCTGAGGCGCCCGGT GGAATATTTTATAGTATAATAATTTATTTCAGCCTATCGCAAGCACTTTG TGCTGGCTGTGTAGATATCCGGCTGACGGTGTTTGGTGTGTGTGTGTATT TATCAAATTGCACATAACAGCGCAATCCGGC
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Coding sequence (CDS) from alignment at H-elongata_contig20647:215..4395+

>mRNA_H-elongata_contig20647.5906.1 ID=mRNA_H-elongata_contig20647.5906.1|Name=mRNA_H-elongata_contig20647.5906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig20647:215..4395+ (Himanthalia elongata Himel1 dioecious)
ATGTTCAGCTCCGATCGGCCGCAGGTGATGACCGTGGTCGAGGAACGGCT
GGGGATGTTCAGCTCCGATCGGCCGCAGGTGATGACCGTGGTCGAGGAAC
GGCTGGGGGGTGACATAGAAGAATCGTGGATCGAGTGCCGGTTGTTGGTG
CTATCAACGAGGGACGCGCTCCCGCCGCTAGGGCGAGAAGGGCTCCGCCG
GAAGGAACGGGGGGGCGAAGACCAGCACGATTGCGGCGATCGCAAATTTC
AAGAGGTAGAGGGTGACATAGAAGAATCGTGGATCGAGTGCCGGTTGTTG
GTGCTATCAACGAGGGACGCGCTCCCGCCGCTAGGGCGAGAAGGGCTCCG
CCGGAAGGAACGGGGGGGCGAAGACCAGCACGATTGCGGCGATCGCAAAT
TTCAAGAGGTAGAGGTGGAGTTATTAACGGGCAGGACACATCAGATTCGA
GGGCAGCTCGCCGCGGAAGGCTGCCCGATCTACGGAGACTTCTTGTACGG
GCCAGTTGCTCTCCTACCACATGAACGATCGCCATCTCTTCAGGCTCCCT
ACGATCGAACGCCGACGCTGGTTGCACAGCAGGCTGGTGCAGACCGCGGC
GACCTCAAGAGTAGTTATCTCCTCGGTTGGGGCGTCGAGGCCACGGATAA
AGGCGGCGAATTGCGACGGATTGGACCCGACAGCTTCGTGGCGAGTCCTG
GGTTAGCTCTGCAGGCACATCACGTTTCTCTTGAGCTGGGGAACGGGGTG
AAGCACGCGTTTACGCTGGGTAGAGACACGTGCTGGTGGTCGATTGCGGA
TGGTCCGCCACGATGAGTGGAGTTATTAACGGGCAGGACACATCAGATTC
GAGGGCAGCTCGCCGCGGAAGGCTGCCCGATCTACGGAGACTTCTTGTAC
GGGCCAGTTGCTCTCCTACCACATGAACGATCGCCATCTCTTCAGGCTCC
CTACGATCGAACGCCGACGCTGGTTGCACAGCAGGCTGGTGCAGACCGCG
GCGACCTCAAGAGTAGTTATCTCCTCGGTTGGGGCGTCGAGGCCACGGAT
AAAGGCGGCGAATTGCGACGGATTGGACCCGACAGCTTCGTGGCGAGTCC
TGGGTTAGCTCTGCAGGCACATCACGTTTCTCTTGAGCTGGGGAACGGGG
TGAAGCACGCGTTTACGCTGGGTAGAGACACGTGCTGGTGGTCGATTGCG
GATGGTCCGCCACGATGA
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