mRNA_H-elongata_contig2064.5902.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2064.5902.1
Unique NamemRNA_H-elongata_contig2064.5902.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5KNV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV2_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.250e-33
Identity = 56/93 (60.22%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   31 ITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            I  ++MY A + +YD++YA  QLAR M+KPS+ HM AAKH LRYLAG+ +FSITY++GG KL T++D+NW  NPDNGKSTSSY+ + AN P+S
Sbjct:   98 IVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMS 190
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.580e-33
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +Q I  ++MY A + +YD++YA  QLAR M+KPS+ HM AAKH LRYLAG+ +FSITY++GG KL T++D+NW  NPDNGKSTSSY+ + AN P+S
Sbjct:  218 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMS 313
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 7.070e-33
Identity = 57/96 (59.38%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +Q I  ++MY A + +YD++YA  QLAR+M+KPS+ HM AAKH LRYLAG+ +FSITY++GG KL T++D+NW  NPDNGKSTSSY+ + AN P+S
Sbjct:  439 YQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMS 534
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 9.190e-33
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +Q I  ++MY A + +YD++YA  QLAR M+KPS+ HM AAKH LRYLAG+ +FSITY++GG KL T++D+NW  NPDNGKSTSSY+ + AN P+S
Sbjct: 1447 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMS 1542
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.680e-32
Identity = 57/96 (59.38%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +Q I  ++MY A + +YD++YA  QLAR M+KPS+ HM AAKH LRYLAG+ +FSITY++GG KL T++D+NW  NPDNGKSTSSY+ + AN P+S
Sbjct:  778 YQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMS 873
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.300e-30
Identity = 55/94 (58.51%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:   28 SITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +I  +++Y A +++YD++Y  +QLARAMS PS+ HMGAAKH+LRYL+GS +FSITY+RGG  LT  +DANWG NPDN KS SSYI++ +  P+S
Sbjct:  474 AIIGSVIYLAQITRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVS 567
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.690e-30
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +Q I   +MY A + +YD++YA  QLAR M KPS+ HM AAKH LRY+AG+TNF ITY+  G KL T++D+NW  NPDNGKSTS Y+ +  N P+S
Sbjct:  309 YQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVS 404
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 8.060e-30
Identity = 52/95 (54.74%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPI 306
            +Q I   ++Y + + +YD++YA +QLAR M+KPS+ HMGAAK   RYLAG+T F I Y+RGG KLT +TD+NWG NPDNGKSTSS++ +  + P+
Sbjct:  501 YQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPM 595
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.570e-29
Identity = 51/88 (57.95%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   46 MYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            MY A + +YD++YA   LAR M+KPS+ H   AK  LRYLAG+ +FSITY++GG KL T++D+NW  NPDNGKSTSSY+ + AN P+S
Sbjct:    1 MYIAQVLRYDIMYATGHLARPMAKPSKVHTVTAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMS 88
[Close]
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.420e-28
Identity = 54/96 (56.25%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:   22 FQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKHVLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANGPIS 309
            +Q+I  ++MY A +++YD++Y  +Q ARAMS PS+ HMGAAKH+LRYL+GS +FSITY+RGG  LT  ++AN G N DNGKS SSYI++ +  P S
Sbjct:  559 YQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPAS 654
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2064.5902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNV2_9PHAE2.250e-3360.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE2.580e-3359.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE7.070e-3359.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE9.190e-3359.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE1.680e-3259.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBU1_9PHAE1.300e-3058.51CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KPN4_9PHAE1.690e-3056.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG39_9PHAE8.060e-3054.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE1.570e-2957.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE3.420e-2856.25Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2064contigH-elongata_contig2064:943..1251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score90.9
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog1005962.W1QCY3
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.6695926-CDS-H-elongata_contig2064:942..12511622930154.6695926-CDS-H-elongata_contig2064:942..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2064 943..1251 +
1691679301.9898603-CDS-H-elongata_contig2064:942..12511691679301.9898603-CDS-H-elongata_contig2064:942..1251Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2064 943..1251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2064.5902.1prot_H-elongata_contig2064.5902.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2064 943..1251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2064.5902.1

>prot_H-elongata_contig2064.5902.1 ID=prot_H-elongata_contig2064.5902.1|Name=mRNA_H-elongata_contig2064.5902.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MTHCNVTFQSITSAIMYPAPLSQYDMLYAVNQLARAMSKPSETHMGAAKH
VLRYLAGSTNFSITYRRGGLKLTTYTDANWGGNPDNGKSTSSYIVIFANG
PIS
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mRNA from alignment at H-elongata_contig2064:943..1251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2064.5902.1 ID=mRNA_H-elongata_contig2064.5902.1|Name=mRNA_H-elongata_contig2064.5902.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig2064:943..1251+ (Himanthalia elongata Himel1 dioecious)
ATGACACACTGTAACGTCACGTTCCAGTCCATCACCAGTGCGATAATGTA
CCCCGCGCCGCTATCGCAATACGACATGCTCTACGCGGTCAATCAGCTGG
CGAGGGCAATGTCCAAGCCCTCGGAAACTCATATGGGGGCGGCAAAACAC
GTACTCCGGTACTTGGCCGGGTCCACCAATTTTTCGATCACCTACAGACG
AGGTGGCTTGAAACTAACGACTTACACTGACGCGAACTGGGGAGGGAATC
CCGACAACGGCAAGTCTACCTCGTCATACATCGTGATATTCGCCAACGGG
CCAATCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig2064:943..1251+

>mRNA_H-elongata_contig2064.5902.1 ID=mRNA_H-elongata_contig2064.5902.1|Name=mRNA_H-elongata_contig2064.5902.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig2064:943..1251+ (Himanthalia elongata Himel1 dioecious)
ATGACACACTGTAACGTCACGTTCCAGTCCATCACCAGTGCGATAATGTA
CCCCGCGCCGCTATCGCAATACGACATGCTCTACGCGGTCAATCAGCTGG
CGAGGGCAATGTCCAAGCCCTCGGAAACTCATATGGGGGCGGCAAAACAC
GTACTCCGGTACTTGGCCGGGTCCACCAATTTTTCGATCACCTACAGACG
AGGTGGCTTGAAACTAACGACTTACACTGACGCGAACTGGGGAGGGAATC
CCGACAACGGCAAGTCTACCTCGTCATACATCGTGATATTCGCCAACGGG
CCAATCAGCATGACACACTGTAACGTCACGTTCCAGTCCATCACCAGTGC
GATAATGTACCCCGCGCCGCTATCGCAATACGACATGCTCTACGCGGTCA
ATCAGCTGGCGAGGGCAATGTCCAAGCCCTCGGAAACTCATATGGGGGCG
GCAAAACACGTACTCCGGTACTTGGCCGGGTCCACCAATTTTTCGATCAC
CTACAGACGAGGTGGCTTGAAACTAACGACTTACACTGACGCGAACTGGG
GAGGGAATCCCGACAACGGCAAGTCTACCTCGTCATACATCGTGATATTC
GCCAACGGGCCAATCAGC
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