mRNA_H-elongata_contig20628.5896.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: D7FYX0_ECTSI (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX0_ECTSI) HSP 1 Score: 281 bits (720), Expect = 1.420e-88 Identity = 147/185 (79.46%), Postives = 168/185 (90.81%), Query Frame = 1
Query: 1 CPLLAIPTAII-SFQESDGTGGLF-PRLLGCAILLMAVFLASRRLLPLAMKRLVLSENDKEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
CPLLAIPTAI+ + +ES GT G F PR+ GCAILL+A +ASRR+LP+AM RLVL + KEQS+GLFTLGVVSYC+G+AL+CERLNLSHEAGALFAGLLMVDSPFA+KAHA MQPLTSLFGGMYLGSLGMIV+P+++VW+FGDVLGCVV+LVLIK +VAMVMKSFGFSWEASTLAGACMAQV E
Sbjct: 361 CPLLAIPTAIMYAVEESQGTTGSFVPRITGCAILLLAFVIASRRVLPMAMARLVLKDK-KEQSSGLFTLGVVSYCLGVALVCERLNLSHEAGALFAGLLMVDSPFAQKAHARMQPLTSLFGGMYLGSLGMIVNPAFMVWNFGDVLGCVVMLVLIKLLIVAMVMKSFGFSWEASTLAGACMAQVSE 544
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A6H5L915_9PHAE (Na_H_Exchanger domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L915_9PHAE) HSP 1 Score: 260 bits (664), Expect = 1.140e-84 Identity = 134/171 (78.36%), Postives = 154/171 (90.06%), Query Frame = 1
Query: 40 QESDGTGGLF-PRLLGCAILLMAVFLASRRLLPLAMKRLVLSENDKEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
+ES GT G F PR+ GCAILL+A +ASRR+LP+AM RLVL + EQS+GLFTL VVSYC+G+AL+CERL+LSHEAGALFAGLLMVDSPFA+KAHA MQPLTSLFGGMYLGSLGMIV+P+++VW+FGDVLGCVV+LVLIK +VAMVMKSFGFSWEASTLAGACMAQV E
Sbjct: 5 EESQGTTGSFVPRIAGCAILLLAFVIASRRVLPMAMARLVLKDKQ-EQSSGLFTLAVVSYCLGVALVCERLDLSHEAGALFAGLLMVDSPFAQKAHARMQPLTSLFGGMYLGSLGMIVNPAFMVWNFGDVLGCVVMLVLIKLLIVAMVMKSFGFSWEASTLAGACMAQVSE 174
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A7S2HHK2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HHK2_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.660e-41 Identity = 84/182 (46.15%), Postives = 121/182 (66.48%), Query Frame = 1
Query: 4 PLLAIPTAIISFQESDGTGGLFPRLLGCAILLMAVFLASRRLLPLAMKRLVLSENDKEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
PLLAIPTAI LF + G +L++ + + +R +P M+ +LS D+ + LFTL VV+YC+G++L+ E L LSHEAGALFAGL+++D+P ++A ++PLTSLFGGMYL SLGMI+SP +++ H G ++ V ++ +K VV VM+SFGF+ AS AG +AQV E
Sbjct: 210 PLLAIPTAISHIVWRYSGLRLFAIMTGYTVLIVTLVILARHTVPRFMQ--LLSNPDRALAPQLFTLAVVTYCLGMSLLSEWLELSHEAGALFAGLVLMDTPHVQRAAQAVEPLTSLFGGMYLASLGMIISPQFLLGHLGAIMSYVFVIYFLKVFVVTFVMRSFGFALAASLAAGVLLAQVSE 389
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: W7U641_9STRA (Sodium hydrogen exchanger n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U641_9STRA) HSP 1 Score: 147 bits (371), Expect = 9.550e-38 Identity = 85/184 (46.20%), Postives = 120/184 (65.22%), Query Frame = 1
Query: 4 PLLAIPTAIISFQESDGTGGLFPRLLGCAILLMAVFLASRRLLPLAMKRLVLSENDKEQSTGL--FTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
PLL+IPTAI G + P L+ A+ L+A + S+RL+P RL+ N E S L F LG+V+YC+ ++L+ E + LS+EAGAL AGL++ D P KA A M+PLT LFGGMYLGSLGMI+SP+++ H G +L CV ++++IK V++ M+S G+S +AS L MAQ+ E
Sbjct: 446 PLLSIPTAIKELLFQHGLLHMLPVLMSYALALLAAAVVSKRLMP----RLINLRNRAENSLSLDLFILGLVAYCLLMSLLTEWMGLSYEAGALLAGLIVADVPQVGKAVAVMEPLTCLFGGMYLGSLGMILSPAFLAHHAGTILLCVAVMIVIKVASVSLGMRSLGYSLKASVLGALTMAQISE 625
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A7S2WCP4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WCP4_9STRA) HSP 1 Score: 139 bits (350), Expect = 6.380e-37 Identity = 78/184 (42.39%), Postives = 121/184 (65.76%), Query Frame = 1
Query: 4 PLLAIPTAIISFQESDGTGGLFPRLLGC--AILLMAVFLASRRLLPLAMKRLVLSENDKEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
PLLA+P A++S ++ G LL +I+L+A+ L +R+++P M+ +LS + + LFT+ V SYC+GL+L+CE +LSHEAGAL AGL++VDSP A++ ++PL SLFGG+YL SLGMI+SP +++ H G V+ V ++ L+K V+ V++ F+ A+ G MAQ+ E
Sbjct: 76 PLLALP-AVLSRGKNKGVSTATVLLLAIVYSIMLIAIVLIARQIMPQCMQ--MLSSPGRSLNPSLFTMAVTSYCLGLSLVCEWFDLSHEAGALIAGLVLVDSPHAQRTAQAIEPLASLFGGIYLASLGMIMSPVFLLDHLGPVMAYVAVIYLLKVLVITRVVRGLRFAAAAAMSTGVIMAQISE 256
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A7S2WDJ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDJ5_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.990e-35 Identity = 78/184 (42.39%), Postives = 121/184 (65.76%), Query Frame = 1
Query: 4 PLLAIPTAIISFQESDGTGGLFPRLLGC--AILLMAVFLASRRLLPLAMKRLVLSENDKEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
PLLA+P A++S ++ G LL +I+L+A+ L +R+++P M+ +LS + + LFT+ V SYC+GL+L+CE +LSHEAGAL AGL++VDSP A++ ++PL SLFGG+YL SLGMI+SP +++ H G V+ V ++ L+K V+ V++ F+ A+ G MAQ+ E
Sbjct: 335 PLLALP-AVLSRGKNKGVSTATVLLLAIVYSIMLIAIVLIARQIMPQCMQ--MLSSPGRSLNPSLFTMAVTSYCLGLSLVCEWFDLSHEAGALIAGLVLVDSPHAQRTAQAIEPLASLFGGIYLASLGMIMSPVFLLDHLGPVMAYVAVIYLLKVLVITRVVRGLRFAAAAAMSTGVIMAQISE 515
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: F0YPR3_AURAN (Na_H_Exchanger domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YPR3_AURAN) HSP 1 Score: 126 bits (317), Expect = 1.390e-31 Identity = 84/201 (41.79%), Postives = 114/201 (56.72%), Query Frame = 1
Query: 4 PLLAIPTAIISFQESDGT---GGLFPRLLGCAILLMAVFLASRRLLPLAMKRLVLSENDKEQ----------------STGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
PLLA+PTA+ + S + G + + G A L V L +RR LP A+ L D+E S F L VV Y + +AL+ +RL LSHEAGALFAGL++V +P KA + PL +LFGGMY+ SLG++ SP YV HFG ++G V ++V+IK VV ++ + GFS A+T AG AQV E
Sbjct: 86 PLLALPTAVHELRSSSHSRPGGWMLGVVGGYAGALGVVVLLARRALPRALGHLT---RDREADARPDANASLRARRAASDASFGLCVVGYALAMALLGDRLKLSHEAGALFAGLVLVGTPHVDKAKRAVSPLAALFGGMYVASLGLVASPQYVRAHFGAIMGRVTVVVVIKVAVVGPMVYALGFSRAAATGAGFAFAQVSE 283
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A8J2SYW5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYW5_9STRA) HSP 1 Score: 119 bits (299), Expect = 5.000e-28 Identity = 78/197 (39.59%), Postives = 111/197 (56.35%), Query Frame = 1
Query: 4 PLLAIPTAIISFQESDGTGGLFPRLL--------GCAILLMAVFLASRRLLPLAMKRLV-------LSENDKEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
PLLA+PTA+ +E D ++ G ++ V L +RR LP A+ L + K +T F L VV Y + +AL+ +RL LSHEAGALFAGL++V +P +A + PL +LFGGMY+ SLG++VSP Y+ H V+ V+ +V +K V A V+ + GFS +A+ AGA AQV E
Sbjct: 416 PLLALPTAVHELRERDQRKHPESSMVMWVAQVAGGYITAIVVVVLFARRALPRALGALQRIGETGDAQDAKKSATTASFGLCVVGYALAMALLGDRLKLSHEAGALFAGLVLVGTPHVDRAKRAVAPLAALFGGMYVASLGLVVSPRYLQNHASAVVAHVLFVVCVKVAVTAPVVYALGFSKQAAAGAGAVFAQVSE 612
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A7S3XPM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPM7_HETAK) HSP 1 Score: 110 bits (275), Expect = 1.700e-26 Identity = 58/126 (46.03%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 172 KEQSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVMKSFGFSWEASTLAGACMAQVRE 549
+ + LFTL VV+Y +GLAL E L LS E GA+ AGLLM +P+A++A + ++PL SLFGGMYL SLGMI++P Y++ HFG++ +++V +KF + +K G A+ AG +AQV E
Sbjct: 37 RRTTNELFTLAVVAYVLGLALASEHLQLSLEVGAVAAGLLMTYTPYARQAESTLEPLMSLFGGMYLASLGMIINPRYILAHFGELALWCLVVVAVKFAAAWVALKRLGAGDVAAYAAGFSLAQVSE 162
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Match: A0A7S1ZZG6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZZG6_9STRA) HSP 1 Score: 101 bits (252), Expect = 6.080e-22 Identity = 54/125 (43.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 178 QSTGLFTLGVVSYCVGLALICERLNLSHEAGALFAGLLMVDSPFAKKAHACMQPLTSLFGGMYLGSLGMIVSPSYVVWHFGDVLGCVVLLVLIKFTVVAMVM-KSFGFSWEASTLAGACMAQVRE 549
+S LFTL VV+Y + +A ICE L LS EAGALFAG++++ SP K ++ +TS+FGGM+L S+G I+SP++V+ H G ++ VV + L K +V++V+ + F + S G+ MAQ+ E
Sbjct: 238 KSCELFTLSVVAYALLMATICEELQLSIEAGALFAGIVLIKSPHVPKVLDSIESITSVFGGMFLTSMGTIISPAFVMSHIGTIMLLVVCIGLFKMVLVSIVLNRCFDYGITPSLAVGSAMAQISE 362 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20628.5896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20628.5896.1 >prot_H-elongata_contig20628.5896.1 ID=prot_H-elongata_contig20628.5896.1|Name=mRNA_H-elongata_contig20628.5896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=183bp CPLLAIPTAIISFQESDGTGGLFPRLLGCAILLMAVFLASRRLLPLAMKRback to top mRNA from alignment at H-elongata_contig20628:139..2504+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20628.5896.1 ID=mRNA_H-elongata_contig20628.5896.1|Name=mRNA_H-elongata_contig20628.5896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2366bp|location=Sequence derived from alignment at H-elongata_contig20628:139..2504+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20628:139..2504+ >mRNA_H-elongata_contig20628.5896.1 ID=mRNA_H-elongata_contig20628.5896.1|Name=mRNA_H-elongata_contig20628.5896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1098bp|location=Sequence derived from alignment at H-elongata_contig20628:139..2504+ (Himanthalia elongata Himel1 dioecious)back to top |