mRNA_H-elongata_contig20606.5891.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20606.5891.1
Unique NamemRNA_H-elongata_contig20606.5891.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: D8LLY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY8_ECTSI)

HSP 1 Score: 378 bits (970), Expect = 6.380e-130
Identity = 194/225 (86.22%), Postives = 203/225 (90.22%), Query Frame = 1
Query:   19 ITLLFCNRPFDLYLSLILQGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAM-DAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEV 690
            + LL   R  +  + L  QG+YLQALECMERGLVLRQHFFGSDS+EVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDD GRAVTYNNLACYYRRRGKLH+ALQYL KALKIEAKMG RVEHPADTHLNTCAVLSQ+GRHQGALEHAQSALILLQEE+FGG AT G A  +  DQPPRADRIAVLAIAYHNMGVEQEFLKKFE SLQSYRKGVEV
Sbjct:    6 VELLALQRIDETCMQLQQQGDYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGATVGDAGGEGGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEV 230          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 367 bits (943), Expect = 8.240e-125
Identity = 191/264 (72.35%), Postives = 222/264 (84.09%), Query Frame = 1
Query:   73 QGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRAISARDCKIREELIRRHSRKPRTGDRGRRPSSKA 864
            QGNYL+ALECMERGLVLRQHFFG+DSDEVW ACK+VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD+ GRAVT+NNLACYYRR+GKLHAALQYLQKALKIE K+  +V++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEE+   +    G M   ++ P+ADRIAVLAIAYHN+GVE EFLKKF+QSLQSYRKGVEV++ +LG +HA+T+TLRN+ +AARRAI  RD + R + +    RK R G  G R +  A
Sbjct:   27 QGNYLEALECMERGLVLRQHFFGADSDEVWRACKVVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDNAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKLD-QVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEELSRVL----GPMADGNEAPKADRIAVLAIAYHNVGVEYEFLKKFDQSLQSYRKGVEVSERFLGPDHAITVTLRNSCIAARRAIMVRDPQARLQNLESKGRKGRGGGAGTRRAKPA 285          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A7S2RTK0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTK0_9STRA)

HSP 1 Score: 360 bits (925), Expect = 6.530e-122
Identity = 185/240 (77.08%), Postives = 209/240 (87.08%), Query Frame = 1
Query:   73 QGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRAISARDCKIR 792
            QGNYL+ALECMERGLVLRQHFFG++SDEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  GRAVT+NNLACYYRR+GKLH+ALQYLQ ALKIEAK+  RV++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEE+   V    G M    + P+ADRIAVLAI+YHN+GVE EFLKKF+QSLQSYRKGVEVA+ +LG  HA+TITLRN+ +AA+RAI ARD  +R
Sbjct:   35 QGNYLEALECMERGLVLRQHFFGAESDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHSALQYLQNALKIEAKLA-RVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEELSRVV----GPMADGKEAPKADRIAVLAISYHNVGVEYEFLKKFDQSLQSYRKGVEVAERFLGSEHAITITLRNSCIAAKRAIMARDPHVR 269          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 356 bits (913), Expect = 6.520e-120
Identity = 179/236 (75.85%), Postives = 203/236 (86.02%), Query Frame = 1
Query:   73 QGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRAISARD 780
            QGNYL+ALECMERGLVLRQHFFG++S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVTYNNLACYYRR+GKLH+ALQYLQKALKIE+KM   VE+PADTHLNTCAVLSQ+GRH  ALEHAQS++ILLQEE+F G           D  PR DR+AVL IAYHN+GVEQEFLKK+EQS+ SYRKGVEV + +LG  HA+T+TLRN+ +AARRA+ ARD
Sbjct:   83 QGNYLEALECMERGLVLRQHFFGAESEEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDQKGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKMK-DVENPADTHLNTCAVLSQLGRHTSALEHAQSSMILLQEELFQG-----------DGDPRPDRVAVLGIAYHNIGVEQEFLKKYEQSIASYRKGVEVVERFLGPRHAITVTLRNSLVAARRAVGARD 306          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A7S4A6K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K0_9STRA)

HSP 1 Score: 349 bits (895), Expect = 1.400e-117
Identity = 178/235 (75.74%), Postives = 200/235 (85.11%), Query Frame = 1
Query:   76 GNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRAISARD 780
            G YL+ALECMERGLVLRQHFFG+ SDEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  GRAVT+NNLACYYRR+GKLHAALQYLQKALKIE ++   V++PADT+LN CAVLSQ+GRHQ ALEHAQ ALILLQEE+   + +          PP+ADR+AVLAIAYHN+GVEQEFLKK  QSLQSYRKGVEVA+ YLGG+HA+T TLRN+ +AARR + ARD
Sbjct:   36 GQYLEALECMERGLVLRQHFFGAGSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIEGRLE-SVDNPADTYLNACAVLSQLGRHQSALEHAQQALILLQEELSSVLGSDNAG------PPKADRVAVLAIAYHNVGVEQEFLKKHNQSLQSYRKGVEVAERYLGGDHAITSTLRNSCVAARRTMLARD 263          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A836CET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET2_9STRA)

HSP 1 Score: 343 bits (879), Expect = 3.070e-115
Identity = 174/217 (80.18%), Postives = 190/217 (87.56%), Query Frame = 1
Query:   73 QGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKD---------QPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQ 696
            QGNYL+ALECMERGLVLRQHFFGSDSDEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD +G+AVT NNLACYYRR+GKLHAALQYLQ+ALKIEA++G RV+ PADTHLNTCAVLSQ+GRHQGAL+HAQSALILLQEE+FGG +    +  A D           PRADR+AVLAIAYHNMGVEQEFLK+F+ SLQSYRKGVEVAQ
Sbjct:   25 QGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQ 241          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A7S1XJL3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJL3_9STRA)

HSP 1 Score: 347 bits (889), Expect = 4.290e-114
Identity = 182/249 (73.09%), Postives = 214/249 (85.94%), Query Frame = 1
Query:   76 GNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGV---ATTGG--AMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRAISARDCK---IREE 798
            GNYL+ALECMERGLVLRQHFFGSDS+EVWSAC+ VGEMCNLLAMTYLQQ+D+ MVLELLKKAEILTERDD GRAVT+NN ACYYRR+GKLHAALQ+LQKAL+IE+++   V + ADT+LNTCAVLSQ+GRHQ ALEHAQ+ALILLQEE+F G+   A  GG  A  A   PP+ DRIAVLAIAYHN+GVEQEFLKKFE SL SYRKG++VA+ +LGG+HA+ +TLRN+  AARRA +++D K   +REE
Sbjct:  135 GNYLEALECMERGLVLRQHFFGSDSNEVWSACRTVGEMCNLLAMTYLQQQDYAMVLELLKKAEILTERDDKGRAVTFNNFACYYRRQGKLHAALQFLQKALRIESRL-VDVPNAADTYLNTCAVLSQLGRHQSALEHAQNALILLQEELFHGIEGGAGMGGEEAGLAPPNPPK-DRIAVLAIAYHNIGVEQEFLKKFEMSLTSYRKGIQVAERFLGGDHAIALTLRNSLTAARRAFASKDPKGRKLREE 381          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A7S3HH21_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH21_9STRA)

HSP 1 Score: 340 bits (873), Expect = 5.660e-114
Identity = 169/234 (72.22%), Postives = 199/234 (85.04%), Query Frame = 1
Query:   73 QGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRAISA 774
            QGNYL+ALECMERGLVLRQHFFG+DS EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D+ GRA T+NNLACYYRR+GKLHAALQYLQKALKIE+ +   V++PADTH+N CAVLSQ+GRHQ AL+HAQ+A+ILLQEE+       G A      PP+ADRIAVLAIAYHN+GVEQEFLK++EQS+ SY+KGVEVA+ YLG  HA+ +TL N+ +AA++  +A
Sbjct:   23 QGNYLEALECMERGLVLRQHFFGADSPEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDEAGRAATFNNLACYYRRQGKLHAALQYLQKALKIESGLT-NVQNPADTHINACAVLSQLGRHQTALDHAQNAIILLQEELLSPPGVVGAA------PPQADRIAVLAIAYHNIGVEQEFLKRYEQSVLSYKKGVEVAERYLGAKHAICVTLNNSLVAAKKQAAA 249          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A482SDU3_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDU3_9ARCH)

HSP 1 Score: 318 bits (814), Expect = 1.900e-105
Identity = 162/218 (74.31%), Postives = 183/218 (83.94%), Query Frame = 1
Query:  103 MERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAA 756
            MERGLVLRQH FG+DS+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D  GRA TYNNLACYYRR+GKLH+ALQYLQKALKIE+K+   V++PADTH+N CAVLSQ+GRHQ ALEHAQSALILLQEE+     + G A       P+ADRIAVLAIAYHN+GVEQEFLK+FEQS+ SY+KG EVA+ YLG  HA+T TL N+  AA
Sbjct:    1 MERGLVLRQHMFGADSEEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDPAGRAATYNNLACYYRRQGKLHSALQYLQKALKIESKLP-NVQNPADTHINACAVLSQLGRHQTALEHAQSALILLQEELLSPPGSVGAAA------PQADRIAVLAIAYHNIGVEQEFLKRFEQSILSYKKGAEVAERYLGTKHAITRTLNNSLAAA 211          
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Match: A0A2R5G2B1_9STRA (Clustered mitochondria protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2B1_9STRA)

HSP 1 Score: 331 bits (848), Expect = 1.890e-101
Identity = 163/231 (70.56%), Postives = 194/231 (83.98%), Query Frame = 1
Query:   73 QGNYLQALECMERGLVLRQHFFGSDSDEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAVTYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVLSQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVLAIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTMAARRA 765
            QG YL+ALECMERGLVLRQHFFG  SDEVW+ACK VG+MCNLLAMTYLQQE+F MVLELLKKAEILTERD+ GRAVTYNNLACY+RR GKLHAALQYLQKALK+E+++   V + ADTHLN CAVLSQ+GRH GALEHAQ+ALI LQEE+F G  +      +       DRIAVLAIAYHN+GVEQEFLK+FE ++ SYRKGV++++ +LG +H +T+TLRN+ +AAR+A
Sbjct:  462 QGKYLEALECMERGLVLRQHFFGPSSDEVWAACKTVGQMCNLLAMTYLQQEEFSMVLELLKKAEILTERDEHGRAVTYNNLACYFRRTGKLHAALQYLQKALKVESRLE-NVTNRADTHLNLCAVLSQLGRHAGALEHAQAALIQLQEELFPGALSASAKSSSSAALASTDRIAVLAIAYHNIGVEQEFLKRFEMAIDSYRKGVDISETHLGTDHGITVTLRNSYLAARQA 691          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20606.5891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY8_ECTSI6.380e-13086.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPG4_9STRA8.240e-12572.35Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RTK0_9STRA6.530e-12277.08Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3YLC4_HETAK6.520e-12075.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4A6K0_9STRA1.400e-11775.74Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A836CET2_9STRA3.070e-11580.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XJL3_9STRA4.290e-11473.09Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HH21_9STRA5.660e-11472.22Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482SDU3_9ARCH1.900e-10574.31Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]
A0A2R5G2B1_9STRA1.890e-10170.56Clustered mitochondria protein-like n=1 Tax=Hondae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20606contigH-elongata_contig20606:5074..6560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.2
Seed ortholog evalue9.2e-103
Seed eggNOG ortholog2880.D8LLY8
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs28ZWJ@1,2R6RA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-14_002170.1
Exons3
Model size909
Cds size909
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20606.5891.1prot_H-elongata_contig20606.5891.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20606 5074..6560 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.5006769-CDS-H-elongata_contig20606:5073..52951622930153.5006769-CDS-H-elongata_contig20606:5073..5295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 5074..5295 -
1691679301.5806878-CDS-H-elongata_contig20606:5073..52951691679301.5806878-CDS-H-elongata_contig20606:5073..5295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 5074..5295 -
1622930153.518202-CDS-H-elongata_contig20606:5418..57091622930153.518202-CDS-H-elongata_contig20606:5418..5709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 5419..5709 -
1691679301.5907674-CDS-H-elongata_contig20606:5418..57091691679301.5907674-CDS-H-elongata_contig20606:5418..5709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 5419..5709 -
1622930153.5296166-CDS-H-elongata_contig20606:6164..65601622930153.5296166-CDS-H-elongata_contig20606:6164..6560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 6165..6560 -
1691679301.6012018-CDS-H-elongata_contig20606:6164..65601691679301.6012018-CDS-H-elongata_contig20606:6164..6560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 6165..6560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20606.5891.1

>prot_H-elongata_contig20606.5891.1 ID=prot_H-elongata_contig20606.5891.1|Name=mRNA_H-elongata_contig20606.5891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp
PERDSLITLLFCNRPFDLYLSLILQGNYLQALECMERGLVLRQHFFGSDS
DEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDIGRAV
TYNNLACYYRRRGKLHAALQYLQKALKIEAKMGYRVEHPADTHLNTCAVL
SQVGRHQGALEHAQSALILLQEEIFGGVATTGGAMDAKDQPPRADRIAVL
AIAYHNMGVEQEFLKKFEQSLQSYRKGVEVAQAYLGGNHAVTITLRNTTM
AARRAISARDCKIREELIRRHSRKPRTGDRGRRPSSKAIVGTGVLNKALS
MR*
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mRNA from alignment at H-elongata_contig20606:5074..6560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20606.5891.1 ID=mRNA_H-elongata_contig20606.5891.1|Name=mRNA_H-elongata_contig20606.5891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1487bp|location=Sequence derived from alignment at H-elongata_contig20606:5074..6560- (Himanthalia elongata Himel1 dioecious)
CCCGAACGGGACTCTCTGATCACGTTGCTGTTCTGCAACCGTCCGTTTGA TTTGTATCTATCTTTAATTTTACAGGGTAACTATTTGCAGGCGCTCGAGT GCATGGAGCGAGGGCTCGTCCTGAGGCAGCATTTCTTCGGCAGTGATAGC GATGAAGTGTGGAGCGCGTGCAAAATCGTCGGCGAGATGTGCAATCTCCT AGCCATGACCTACCTCCAACAAGAGGATTTTGGTATGGTGCTTGAACTGC TCAAGAAGGCAGAAATCCTGACGGAAAGGGACGATATCGGCCGAGCGGTC ACATACAACAATCTCGCCTGCTATTACCGGCGACGCGGAAAGCTACACGC TGCGCTGCAGTACCTCCAGAAGGCTCTCAAGATCGAGGCAAAGATGGTGA GGCGCCGTGCCGATTTTCTCTCGACCGTCATCAGCAACGCGCCGCTGTGG CCACCACAAGTCGCGTTCAGCCTGATCATCAATTCCCTCGTCTACGCGAA GAATGGGCTTCATCTTGACGTTTTCAAATAGGCTGCGTAGGATCCGGCTG ACCGCTCCACAGCGTACACTTCGTGCTGTACTAATGTTTTGCCCGCAGCA AGCGGTATGTACAGTACTCCTGTACAGCACTCGATATGCGAGACCTCGCG CGAGAGACTCTGCCGGTTTTGGTGAGTATATTGGCGCTCTTCTATTCTAG TGTTTTTCCCGCCCAGGCGTGTGCCCGCGTCGGAGCCTTGCGTGCCAGAG CAGTATTTCTATATTGTCGTAGTGAATTTAACCCGCGTTGAGGGCTAGCA CCGCCGCTCCGGCTCTCGCCATCGCGTGAAACCTGTCGCAACGACGAGCA GGGCTATCGCGTGGAGCATCCGGCAGATACGCACCTCAACACGTGTGCGG TTCTATCTCAAGTTGGAAGACATCAGGGGGCCTTGGAACACGCACAGTCG GCGCTGATTCTTCTGCAGGAAGAAATTTTCGGCGGAGTTGCCACGACTGG AGGAGCCATGGATGCGAAAGACCAGCCCCCGAGGGCCGACAGAATCGCCG TTCTGGCGATCGCCTATCACAACATGGGCGTGGAGCAGGAGTTCCTGAAG AAGTTCGAGCAAAGCCTGCAATCCTACAGAAAGGGCGTAGAGGTATATTA GTGGCACCTATAGAAACGCCACATCTGTCCATTCCAAAACATCCTATATT AGGTTAAAAGATTGCAGCATGGCGTTCGGCCACGAAGCACTCTTGGAATT GTTCCGCCGTGGTAGGTGGCCCAAGCGTATCTCGGAGGAAACCACGCAGT GACCATCACGCTCCGCAACACTACGATGGCAGCCCGCCGAGCTATAAGCG CAAGAGATTGTAAAATACGAGAAGAGCTCATACGCCGACACAGTCGGAAA CCAAGAACCGGAGACCGAGGAAGGCGACCGTCTTCCAAGGCCATCGTAGG AACGGGTGTGCTGAACAAAGCTCTCTCAATGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20606:5074..6560-

>mRNA_H-elongata_contig20606.5891.1 ID=mRNA_H-elongata_contig20606.5891.1|Name=mRNA_H-elongata_contig20606.5891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig20606:5074..6560- (Himanthalia elongata Himel1 dioecious)
CCCGAACGGGACTCTCTGATCACGTTGCTGTTCTGCAACCGTCCGTTTGA
TTTGTATCTATCTTTAATTTTACAGGGTAACTATTTGCAGGCGCTCGAGT
GCATGGAGCGAGGGCTCGTCCTGAGGCAGCATTTCTTCGGCAGTGATAGC
GATGAAGTGTGGAGCGCGTGCAAAATCGTCGGCGAGATGTGCAATCTCCT
AGCCATGACCTACCTCCAACAAGAGGATTTTGGTATGGTGCTTGAACTGC
TCAAGAAGGCAGAAATCCTGACGGAAAGGGACGATATCGGCCGAGCGGTC
ACATACAACAATCTCGCCTGCTATTACCGGCGACGCGGAAAGCTACACGC
TGCGCTGCAGTACCTCCAGAAGGCTCTCAAGATCGAGGCAAAGATGCCCG
AACGGGACTCTCTGATCACGTTGCTGTTCTGCAACCGTCCGTTTGATTTG
TATCTATCTTTAATTTTACAGGGTAACTATTTGCAGGCGCTCGAGTGCAT
GGAGCGAGGGCTCGTCCTGAGGCAGCATTTCTTCGGCAGTGATAGCGATG
AAGTGTGGAGCGCGTGCAAAATCGTCGGCGAGATGTGCAATCTCCTAGCC
ATGACCTACCTCCAACAAGAGGATTTTGGTATGGTGCTTGAACTGCTCAA
GAAGGCAGAAATCCTGACGGAAAGGGACGATATCGGCCGAGCGGTCACAT
ACAACAATCTCGCCTGCTATTACCGGCGACGCGGAAAGCTACACGCTGCG
CTGCAGTACCTCCAGAAGGCTCTCAAGATCGAGGCAAAGATGGGCTATCG
CGTGGAGCATCCGGCAGATACGCACCTCAACACGTGTGCGGTTCTATCTC
AAGTTGGAAGACATCAGGGGGCCTTGGAACACGCACAGTCGGCGCTGATT
CTTCTGCAGGAAGAAATTTTCGGCGGAGTTGCCACGACTGGAGGAGCCAT
GGATGCGAAAGACCAGCCCCCGAGGGCCGACAGAATCGCCGTTCTGGCGA
TCGCCTATCACAACATGGGCGTGGAGCAGGAGTTCCTGAAGAAGTTCGAG
CAAAGCCTGCAATCCTACAGAAAGGGCGTAGAGGGCTATCGCGTGGAGCA
TCCGGCAGATACGCACCTCAACACGTGTGCGGTTCTATCTCAAGTTGGAA
GACATCAGGGGGCCTTGGAACACGCACAGTCGGCGCTGATTCTTCTGCAG
GAAGAAATTTTCGGCGGAGTTGCCACGACTGGAGGAGCCATGGATGCGAA
AGACCAGCCCCCGAGGGCCGACAGAATCGCCGTTCTGGCGATCGCCTATC
ACAACATGGGCGTGGAGCAGGAGTTCCTGAAGAAGTTCGAGCAAAGCCTG
CAATCCTACAGAAAGGGCGTAGAGGTGGCCCAAGCGTATCTCGGAGGAAA
CCACGCAGTGACCATCACGCTCCGCAACACTACGATGGCAGCCCGCCGAG
CTATAAGCGCAAGAGATTGTAAAATACGAGAAGAGCTCATACGCCGACAC
AGTCGGAAACCAAGAACCGGAGACCGAGGAAGGCGACCGTCTTCCAAGGC
CATCGTAGGAACGGGTGTGCTGAACAAAGCTCTCTCAATGAGGTGAGTGG
CCCAAGCGTATCTCGGAGGAAACCACGCAGTGACCATCACGCTCCGCAAC
ACTACGATGGCAGCCCGCCGAGCTATAAGCGCAAGAGATTGTAAAATACG
AGAAGAGCTCATACGCCGACACAGTCGGAAACCAAGAACCGGAGACCGAG
GAAGGCGACCGTCTTCCAAGGCCATCGTAGGAACGGGTGTGCTGAACAAA
GCTCTCTCAATGAGGTGA
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