mRNA_H-elongata_contig20606.5890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20606.5890.1
Unique NamemRNA_H-elongata_contig20606.5890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 7.110e-75
Identity = 111/170 (65.29%), Postives = 133/170 (78.24%), Query Frame = 1
Query:    1 LSQILAINPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEK----PETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRDDNGLVMRP 498
            L +I+A++PSCCGPTAPGP D+VIH+RNY++EL+ EQY+KL FKDLD++FY  V+  A E     PETVWVVGEF  + PL KRLQ+++ NVK AEMV DQF+AFCFL+RAPRLVMAHSTFSWW AFLG  TEVHFP      GVTGP I V DE RY+YRD+ G V+ P
Sbjct:   43 LRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAV-DEGRYVYRDEAGRVVPP 211          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 1.200e-72
Identity = 111/170 (65.29%), Postives = 133/170 (78.24%), Query Frame = 1
Query:    1 LSQILAINPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEK----PETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRDDNGLVMRP 498
            L +I+A++PSCCGPTAPGP D+VIH+RNY++EL+ EQY+KL FKDLD++FY  V+  A E     PETVWVVGEF  + PL KRLQ+++ NVK AEMV DQF+AFCFL+RAPRLVMAHSTFSWW AFLG  TEVHFP      GVTGP I V DE RY+YRD+ G V+ P
Sbjct:  210 LRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAV-DEGRYVYRDEAGRVVPP 378          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: F2TVY1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVY1_SALR5)

HSP 1 Score: 86.7 bits (213), Expect = 1.070e-16
Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = 1
Query:   13 LAINPSCCGPTA-----PGPNDMVIHYRNYKS-ELSDEQYKKLH-FKDLDFKFYNEVIDTAQEKP--ETVWVVGEFEKDNPLVKRLQEEY-------DNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQ--IVVIDEPRYIYRD 474
            L I+ SC    +     PGP D+V+H R Y   E  + +Y     F DL + +Y+ ++   Q K   +TVW+     + +P+ ++L  +Y       D  K    + D    + F+  A RLVM+ ST++WWAA+LG+A EVH+P      G  GP+  +  +DEPRY++ D
Sbjct:  342 LRIDTSCLAAQSLPLSLPGPRDIVVHLRAYHGCEGEEHEYDPTEAFVDLPWDYYDRILQRYQRKGGWDTVWLASRCGEHHPIAQQLMTKYGARVIQGDGSKNWASMHD----WLFMRSARRLVMSQSTYAWWAAWLGDAEEVHYPLAGDWWG-KGPRHTLYPVDEPRYVFHD 508          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A349D2R7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peribacteria bacterium TaxID=2053688 RepID=A0A349D2R7_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-12
Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   19 INPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFP------FQSTRMGVTGPQIVVIDEPRYIY 468
            + P+C     P P  +V+H R          Y ++    L F FY +V+  A        V+   +  +P  ++ +     +K  +++ D    FCFL  A ++ ++ ST+SWWAA+L +ATE++FP      F S+R  +     + +DEPRY Y
Sbjct:  101 MQPACSAAAKPDPRALVMHVRR-------GDYLRVEGYPLPFSFYKDVLKRADFDH---LVICTDDPRDPFFRKFRHHDPEIKSGDLLED----FCFLKSAKKIALSQSTYSWWAAYLSDATEIYFPRSLTGPFSSSRPDID----LEVDEPRYRY 238          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: F0YD20_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD20_AURAN)

HSP 1 Score: 67.4 bits (163), Expect = 6.010e-10
Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 1
Query:   49 PGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPETVWVVGEFEKDNP-LVKRLQEEYDNVKIAEMVADQFNA---------FCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRDDN 480
            P P+D+V+H R   S L   +Y           ++  +    +  P  + VV   ++  P +V+ L E     ++   +AD  +          F ++TRA RLV+  ST+SWWAA+LG A EVH P        +G   V   EP Y++ D N
Sbjct:  280 PRPDDVVVHVRLCDSPLHFYKYYSYE------NYFEHIFRHLEPAPARIRVVTGCDERKPGVVRELVERLGAERVFTAIADGTSKKPHRSVAADFLYMTRAKRLVVTESTYSWWAAYLGAADEVHAP-------ASGVVPVPYQEPHYVFHDIN 420          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A7S3JMN3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMN3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.310e-8
Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   49 PGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPE-TVWVVGEFE-KDNPLVKRLQEE-----------YDNV-----KIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRD 474
            P   D+VIH R     L +  Y    + D+D  ++  ++   + +P  ++ ++   + KD  + + L++            YD+      K + + AD    F +L  A RL++  STFSWWAA L NATE+H P        +G   V ID+PR+++ D
Sbjct:  359 PSTKDLVIHIR-----LCNAPYHVYKYFDID-NYFGPLLQRIKPRPGGSIRIITTCQAKDRGVTEELKKPPFHAIVTRPLLYDSTNSQLDKASGLAAD----FLYLAHATRLIICESTFSWWAAILSNATEIHAP-------ASGMVPVAIDDPRFVFHD 501          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A8J2WY98_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY98_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.400e-7
Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   49 PGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPETVWVVGEFE-KDNPLVKRLQEEYDNVKIAE------------MVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFP 399
            P  +D+V+H R     +   QYK   +K+    +++ V+   Q  P+ + +V     + N +VK L E   N ++A+            + AD    F ++ RA RLV+  STFS+WAAFLG+A EVH P
Sbjct:  321 PDSDDVVVHVRLCDGPV--HQYKYYSWKN----YFSHVLPRLQPPPKRIKIVTACNPRRNGVVKDLLENVPNAEVAKPRLRGSPTTAKSVAAD----FAYMARAKRLVVTESTFSFWAAFLGDAHEVHAP 440          
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.370e-6
Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query:  301 FCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRD 474
            F +L RA RLV+  ST+SWWAA++G ATEVH P      GV G   V  DE RY++ D
Sbjct:  164 FAYLARATRLVVTESTYSWWAAYVGQATEVHAP------GV-GTVPVPADERRYVFHD 214          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G107_ECTSI7.110e-7565.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G104_ECTSI1.200e-7265.29Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
F2TVY1_SALR51.070e-1633.14Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A349D2R7_9BACT1.770e-1228.85Uncharacterized protein n=1 Tax=Candidatus Peribac... [more]
F0YD20_AURAN6.010e-1029.87Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3JMN3_9STRA5.310e-828.75Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2WY98_9STRA2.400e-733.08Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2T2Q7_9STRA1.370e-651.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20606contigH-elongata_contig20606:1648..2707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.3
Seed ortholog evalue1.7e-58
Seed eggNOG ortholog2880.D7G104
EggNOG OGs2D12B@1,2SGFI@2759
Ec32 ortholog descriptionalpha-1,2-fucosyltransferase, putative
Ec32 orthologEc-22_001510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size510
Cds size510
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20606.5890.1prot_H-elongata_contig20606.5890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20606 1648..2707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.4311738-CDS-H-elongata_contig20606:1647..17791622930153.4311738-CDS-H-elongata_contig20606:1647..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 1648..1779 +
1691679301.5499861-CDS-H-elongata_contig20606:1647..17791691679301.5499861-CDS-H-elongata_contig20606:1647..1779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 1648..1779 +
1622930153.4475155-CDS-H-elongata_contig20606:2074..22151622930153.4475155-CDS-H-elongata_contig20606:2074..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 2075..2215 +
1691679301.5607188-CDS-H-elongata_contig20606:2074..22151691679301.5607188-CDS-H-elongata_contig20606:2074..2215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 2075..2215 +
1622930153.4612968-CDS-H-elongata_contig20606:2470..27071622930153.4612968-CDS-H-elongata_contig20606:2470..2707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 2471..2707 +
1691679301.5713384-CDS-H-elongata_contig20606:2470..27071691679301.5713384-CDS-H-elongata_contig20606:2470..2707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20606 2471..2707 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20606.5890.1

>prot_H-elongata_contig20606.5890.1 ID=prot_H-elongata_contig20606.5890.1|Name=mRNA_H-elongata_contig20606.5890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
LSQILAINPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKF
YNEVIDTAQEKPETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNA
FCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVID
EPRYIYRDDNGLVMRPFLR*
back to top

mRNA from alignment at H-elongata_contig20606:1648..2707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20606.5890.1 ID=mRNA_H-elongata_contig20606.5890.1|Name=mRNA_H-elongata_contig20606.5890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-elongata_contig20606:1648..2707+ (Himanthalia elongata Himel1 dioecious)
CTGTCTCAGATCTTGGCCATTAATCCATCCTGCTGCGGCCCCACCGCTCC GGGGCCAAACGACATGGTCATTCACTACCGCAACTACAAGTCGGAGTTGT CCGATGAGCAATACAAGAAGCTACACTTCAAGGTGCCCCGCGTGGTCATC AAACAAGTAGTATTAATAGTACCTTGCATTTCGAAAAACAAGCTTTTGAC GTAGGGCGCTCTTTTTTATCGTTGTTCGAGCGGGGCAGTATGACTACTGG CACGAGTGGGCACATAGGACGATAATCGGAATACGATATATATGACGGCT GGATGCGAGCGTCAAGTCGAAAATCGAATGCGCCAGGTGTGGTCTGGGTT GCAGTTGCTCGGGTTACATATTAGATTATACATGAGTTGGAAACACATCG ACCGCCGTATCGTATCCCCCTTCTCAGGACTTGGACTTCAAGTTTTACAA TGAGGTGATCGATACTGCCCAAGAAAAGCCCGAAACCGTGTGGGTGGTAG GAGAATTCGAGAAGGACAATCCGTTGGTGAAGCGCTTGCAAGAGGAGTAT GACAACGTTAAAATCGCTGTGAGTCACGTGGTGTCTCCTTCCAACGTCAG ACGTTCGATGGCGGTTTGTTGCCGTAGCCCGCCGAATGAGTGTCCACTGT CACCGAAGGGATTGGGCGCATCCCTTTATATCCGTACTTCGAGCAACGTT CCGCACTGACGCATCGCACGCTCCTAGCCCGCAAGCCGAATATCTCTCCC GATAACTCAGCCCCGCGAGCCTCCCCTCGTCGTCTGCTGCTGCTGCTGCG TGGACCCTTCCCCGGCCTAACAGGAGATGGTCGCCGACCAGTTCAACGCA TTCTGCTTCCTGACTCGCGCTCCTCGCCTGGTCATGGCGCATAGTACCTT CAGCTGGTGGGCAGCGTTCCTGGGCAACGCGACCGAGGTGCACTTTCCGT TCCAGTCGACGCGAATGGGTGTCACCGGACCACAGATCGTTGTCATTGAT GAGCCTCGTTACATTTATCGAGACGACAACGGACTCGTGATGCGTCCTTT TCTACGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20606:1648..2707+

>mRNA_H-elongata_contig20606.5890.1 ID=mRNA_H-elongata_contig20606.5890.1|Name=mRNA_H-elongata_contig20606.5890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig20606:1648..2707+ (Himanthalia elongata Himel1 dioecious)
CTGTCTCAGATCTTGGCCATTAATCCATCCTGCTGCGGCCCCACCGCTCC
GGGGCCAAACGACATGGTCATTCACTACCGCAACTACAAGTCGGAGTTGT
CCGATGAGCAATACAAGAAGCTACACTTCAAGCTGTCTCAGATCTTGGCC
ATTAATCCATCCTGCTGCGGCCCCACCGCTCCGGGGCCAAACGACATGGT
CATTCACTACCGCAACTACAAGTCGGAGTTGTCCGATGAGCAATACAAGA
AGCTACACTTCAAGGACTTGGACTTCAAGTTTTACAATGAGGTGATCGAT
ACTGCCCAAGAAAAGCCCGAAACCGTGTGGGTGGTAGGAGAATTCGAGAA
GGACAATCCGTTGGTGAAGCGCTTGCAAGAGGAGTATGACAACGTTAAAA
TCGCTGACTTGGACTTCAAGTTTTACAATGAGGTGATCGATACTGCCCAA
GAAAAGCCCGAAACCGTGTGGGTGGTAGGAGAATTCGAGAAGGACAATCC
GTTGGTGAAGCGCTTGCAAGAGGAGTATGACAACGTTAAAATCGCTGAGA
TGGTCGCCGACCAGTTCAACGCATTCTGCTTCCTGACTCGCGCTCCTCGC
CTGGTCATGGCGCATAGTACCTTCAGCTGGTGGGCAGCGTTCCTGGGCAA
CGCGACCGAGGTGCACTTTCCGTTCCAGTCGACGCGAATGGGTGTCACCG
GACCACAGATCGTTGTCATTGATGAGCCTCGTTACATTTATCGAGACGAC
AACGGACTCGTGATGCGTCCTTTTCTACGGTGAGAGATGGTCGCCGACCA
GTTCAACGCATTCTGCTTCCTGACTCGCGCTCCTCGCCTGGTCATGGCGC
ATAGTACCTTCAGCTGGTGGGCAGCGTTCCTGGGCAACGCGACCGAGGTG
CACTTTCCGTTCCAGTCGACGCGAATGGGTGTCACCGGACCACAGATCGT
TGTCATTGATGAGCCTCGTTACATTTATCGAGACGACAACGGACTCGTGA
TGCGTCCTTTTCTACGGTGA
back to top