mRNA_H-elongata_contig20606.5890.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI) HSP 1 Score: 232 bits (591), Expect = 7.110e-75 Identity = 111/170 (65.29%), Postives = 133/170 (78.24%), Query Frame = 1
Query: 1 LSQILAINPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEK----PETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRDDNGLVMRP 498
L +I+A++PSCCGPTAPGP D+VIH+RNY++EL+ EQY+KL FKDLD++FY V+ A E PETVWVVGEF + PL KRLQ+++ NVK AEMV DQF+AFCFL+RAPRLVMAHSTFSWW AFLG TEVHFP GVTGP I V DE RY+YRD+ G V+ P
Sbjct: 43 LRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAV-DEGRYVYRDEAGRVVPP 211
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI) HSP 1 Score: 232 bits (591), Expect = 1.200e-72 Identity = 111/170 (65.29%), Postives = 133/170 (78.24%), Query Frame = 1
Query: 1 LSQILAINPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEK----PETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRDDNGLVMRP 498
L +I+A++PSCCGPTAPGP D+VIH+RNY++EL+ EQY+KL FKDLD++FY V+ A E PETVWVVGEF + PL KRLQ+++ NVK AEMV DQF+AFCFL+RAPRLVMAHSTFSWW AFLG TEVHFP GVTGP I V DE RY+YRD+ G V+ P
Sbjct: 210 LRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAV-DEGRYVYRDEAGRVVPP 378
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: F2TVY1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVY1_SALR5) HSP 1 Score: 86.7 bits (213), Expect = 1.070e-16 Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = 1
Query: 13 LAINPSCCGPTA-----PGPNDMVIHYRNYKS-ELSDEQYKKLH-FKDLDFKFYNEVIDTAQEKP--ETVWVVGEFEKDNPLVKRLQEEY-------DNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQ--IVVIDEPRYIYRD 474
L I+ SC + PGP D+V+H R Y E + +Y F DL + +Y+ ++ Q K +TVW+ + +P+ ++L +Y D K + D + F+ A RLVM+ ST++WWAA+LG+A EVH+P G GP+ + +DEPRY++ D
Sbjct: 342 LRIDTSCLAAQSLPLSLPGPRDIVVHLRAYHGCEGEEHEYDPTEAFVDLPWDYYDRILQRYQRKGGWDTVWLASRCGEHHPIAQQLMTKYGARVIQGDGSKNWASMHD----WLFMRSARRLVMSQSTYAWWAAWLGDAEEVHYPLAGDWWG-KGPRHTLYPVDEPRYVFHD 508
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A349D2R7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peribacteria bacterium TaxID=2053688 RepID=A0A349D2R7_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 1.770e-12 Identity = 45/156 (28.85%), Postives = 76/156 (48.72%), Query Frame = 1
Query: 19 INPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPETVWVVGEFEKDNPLVKRLQEEYDNVKIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFP------FQSTRMGVTGPQIVVIDEPRYIY 468
+ P+C P P +V+H R Y ++ L F FY +V+ A V+ + +P ++ + +K +++ D FCFL A ++ ++ ST+SWWAA+L +ATE++FP F S+R + + +DEPRY Y
Sbjct: 101 MQPACSAAAKPDPRALVMHVRR-------GDYLRVEGYPLPFSFYKDVLKRADFDH---LVICTDDPRDPFFRKFRHHDPEIKSGDLLED----FCFLKSAKKIALSQSTYSWWAAYLSDATEIYFPRSLTGPFSSSRPDID----LEVDEPRYRY 238
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: F0YD20_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD20_AURAN) HSP 1 Score: 67.4 bits (163), Expect = 6.010e-10 Identity = 46/154 (29.87%), Postives = 71/154 (46.10%), Query Frame = 1
Query: 49 PGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPETVWVVGEFEKDNP-LVKRLQEEYDNVKIAEMVADQFNA---------FCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRDDN 480
P P+D+V+H R S L +Y ++ + + P + VV ++ P +V+ L E ++ +AD + F ++TRA RLV+ ST+SWWAA+LG A EVH P +G V EP Y++ D N
Sbjct: 280 PRPDDVVVHVRLCDSPLHFYKYYSYE------NYFEHIFRHLEPAPARIRVVTGCDERKPGVVRELVERLGAERVFTAIADGTSKKPHRSVAADFLYMTRAKRLVVTESTYSWWAAYLGAADEVHAP-------ASGVVPVPYQEPHYVFHDIN 420
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A7S3JMN3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMN3_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 5.310e-8 Identity = 46/160 (28.75%), Postives = 77/160 (48.12%), Query Frame = 1
Query: 49 PGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPE-TVWVVGEFE-KDNPLVKRLQEE-----------YDNV-----KIAEMVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRD 474
P D+VIH R L + Y + D+D ++ ++ + +P ++ ++ + KD + + L++ YD+ K + + AD F +L A RL++ STFSWWAA L NATE+H P +G V ID+PR+++ D
Sbjct: 359 PSTKDLVIHIR-----LCNAPYHVYKYFDID-NYFGPLLQRIKPRPGGSIRIITTCQAKDRGVTEELKKPPFHAIVTRPLLYDSTNSQLDKASGLAAD----FLYLAHATRLIICESTFSWWAAILSNATEIHAP-------ASGMVPVAIDDPRFVFHD 501
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A8J2WY98_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY98_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.400e-7 Identity = 43/130 (33.08%), Postives = 67/130 (51.54%), Query Frame = 1
Query: 49 PGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFYNEVIDTAQEKPETVWVVGEFE-KDNPLVKRLQEEYDNVKIAE------------MVADQFNAFCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFP 399
P +D+V+H R + QYK +K+ +++ V+ Q P+ + +V + N +VK L E N ++A+ + AD F ++ RA RLV+ STFS+WAAFLG+A EVH P
Sbjct: 321 PDSDDVVVHVRLCDGPV--HQYKYYSWKN----YFSHVLPRLQPPPKRIKIVTACNPRRNGVVKDLLENVPNAEVAKPRLRGSPTTAKSVAAD----FAYMARAKRLVVTESTFSFWAAFLGDAHEVHAP 440
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.370e-6 Identity = 30/58 (51.72%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 301 FCFLTRAPRLVMAHSTFSWWAAFLGNATEVHFPFQSTRMGVTGPQIVVIDEPRYIYRD 474
F +L RA RLV+ ST+SWWAA++G ATEVH P GV G V DE RY++ D
Sbjct: 164 FAYLARATRLVVTESTYSWWAAYVGQATEVHAP------GV-GTVPVPADERRYVFHD 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20606.5890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20606.5890.1 >prot_H-elongata_contig20606.5890.1 ID=prot_H-elongata_contig20606.5890.1|Name=mRNA_H-elongata_contig20606.5890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp LSQILAINPSCCGPTAPGPNDMVIHYRNYKSELSDEQYKKLHFKDLDFKFback to top mRNA from alignment at H-elongata_contig20606:1648..2707+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20606.5890.1 ID=mRNA_H-elongata_contig20606.5890.1|Name=mRNA_H-elongata_contig20606.5890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-elongata_contig20606:1648..2707+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20606:1648..2707+ >mRNA_H-elongata_contig20606.5890.1 ID=mRNA_H-elongata_contig20606.5890.1|Name=mRNA_H-elongata_contig20606.5890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig20606:1648..2707+ (Himanthalia elongata Himel1 dioecious)back to top |