mRNA_H-elongata_contig20603.5887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20603.5887.1
Unique NamemRNA_H-elongata_contig20603.5887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20603.5887.1 vs. uniprot
Match: D8LJE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJE8_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 3.340e-50
Identity = 85/173 (49.13%), Postives = 130/173 (75.14%), Query Frame = 2 
Query:    2 QIIRIEKAKDDIMALRLKQAVKGNLKANDEAREMDSYQSAKETYLKKKNSFLKVPGWAQGWFEWPDREHFNQCAYRHGFMALFGGAFPSAGVSLQALGGASCFALTMNRNSPPLQRDENGQVAEIRLPAKKTIALSFITVVLCVVAGNFIGGFAANIFGEYYLLRESYIAVAI 520
            Q+IR++KAKD I++LRL QAVKGN+K N+EA+ MDSY +AKE Y+K+++S  + P WA+GW + PD+ H  +CA RHG MALF  AFPSAG+ ++ +GG + F +TMNR+ P L+RD+NGQVAE+RLP+K + A+SF+ V+  +  G+ +GG  +   G   L+R++++ +++
Sbjct:  123 QVIRVDKAKDGILSLRLNQAVKGNIKTNEEAQNMDSYLTAKEAYIKQRDSPWQRPTWAKGWVKVPDKVHGKRCATRHGLMALFVLAFPSAGMGVKLIGGMTTFGMTMNRDGPELKRDDNGQVAEVRLPSKLSSAMSFLAVIGSIFVGSAVGGTFSQYIGNRILIRDTWMDLSV 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20603.5887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJE8_ECTSI3.340e-5049.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20603contigH-elongata_contig20603:190..3270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.1
Seed ortholog evalue6.7e-38
Seed eggNOG ortholog2880.D8LJE8
EggNOG free text desc.Pfam:DUF3353
EggNOG OGs2E785@1,2SDV7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF3353
Ec32 orthologEc-06_010070.1
Exons4
Model size870
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20603.5887.1prot_H-elongata_contig20603.5887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20603 227..3025 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.082523-UTR-H-elongata_contig20603:189..2261622930153.082523-UTR-H-elongata_contig20603:189..226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20603 190..226 +
1691679301.4232707-UTR-H-elongata_contig20603:189..2261691679301.4232707-UTR-H-elongata_contig20603:189..226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20603 190..226 +
1622930153.162933-UTR-H-elongata_contig20603:3025..32701622930153.162933-UTR-H-elongata_contig20603:3025..3270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20603 3026..3270 +
1691679301.475511-UTR-H-elongata_contig20603:3025..32701691679301.475511-UTR-H-elongata_contig20603:3025..3270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20603 3026..3270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.1004257-CDS-H-elongata_contig20603:226..2681622930153.1004257-CDS-H-elongata_contig20603:226..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 227..268 +
1691679301.4350169-CDS-H-elongata_contig20603:226..2681691679301.4350169-CDS-H-elongata_contig20603:226..268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 227..268 +
1622930153.116411-CDS-H-elongata_contig20603:798..10461622930153.116411-CDS-H-elongata_contig20603:798..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 799..1046 +
1691679301.4449174-CDS-H-elongata_contig20603:798..10461691679301.4449174-CDS-H-elongata_contig20603:798..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 799..1046 +
1622930153.131978-CDS-H-elongata_contig20603:1542..17231622930153.131978-CDS-H-elongata_contig20603:1542..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 1543..1723 +
1691679301.4550023-CDS-H-elongata_contig20603:1542..17231691679301.4550023-CDS-H-elongata_contig20603:1542..1723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 1543..1723 +
1622930153.147-CDS-H-elongata_contig20603:2908..30251622930153.147-CDS-H-elongata_contig20603:2908..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 2909..3025 +
1691679301.4653246-CDS-H-elongata_contig20603:2908..30251691679301.4653246-CDS-H-elongata_contig20603:2908..3025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20603 2909..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20603.5887.1

>prot_H-elongata_contig20603.5887.1 ID=prot_H-elongata_contig20603.5887.1|Name=mRNA_H-elongata_contig20603.5887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MALRLKQAVKGNLKANDEAREMDSYQSAKETYLKKKNSFLKVPGWAQGWF
EWPDREHFNQCAYRHGFMALFGGAFPSAGVSLQALGGASCFALTMNRNSP
PLQRDENGQVAEIRLPAKKTIALSFITVVLCVVAGNFIGGFAANIFGEYY
LLRESYIAVAIQLSFLAAGSTITTWRDPKDGPEIAQRRGKMGRRD*
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mRNA from alignment at H-elongata_contig20603:190..3270+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20603.5887.1 ID=mRNA_H-elongata_contig20603.5887.1|Name=mRNA_H-elongata_contig20603.5887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3081bp|location=Sequence derived from alignment at H-elongata_contig20603:190..3270+ (Himanthalia elongata Himel1 dioecious)
GCAGATTATTCGAATAGAGAAGGCGAAGGATGACATCATGGCCTTGCGGC
TCAAGCAGGCGGTCAAGGGAAACCTAAAGGTAGCCAGCCCGCTATTCTTC
TCTCTTCCATGAGTCATTTGCTTTCACCCGAAGCCGCTCTTCTCTGTTTA
TCCCGCCCGGTGGCGCGCCCACGATGCAAGCGCACAAAGACTTACTCCAT
GCTCTGGGATTAGTTGCCCGTTGATCACGGTATTGCTTACATTTACCACC
AACCGCACGCCTTGAGAGCGATCCATGGGGTTGAAGATCGGTGGCTGAGA
AGAAGACTTTACATATTTTTCTTATTTTAGGATGTAACTAGAGGAAAAAA
ATAGTTTGCAACGACAGTACGGATCGTCGCATCGTCGCTCGCCTTCCACT
CACCTTCAAGGCAGAAGGACCACATCTGTCGACCCTGCCGCGGGGTCATC
CCCTGCCCCCCACTTCGCGACTTCGTGTAAGCGTTTGTCAACGCGGTGGA
AACCCCCCAAGGGACAGAGCTCGGATGCCGCGCTTGGTTGGACCTGGACG
CTGGAAATTGTCCCAAATGAGTGTTCCCTCCTTACATCCGAAACCCCCAT
ATATCGCAGGCGAACGATGAAGCGCGGGAAATGGACAGCTATCAGTCGGC
GAAGGAAACGTACCTGAAAAAGAAGAACAGCTTTTTGAAGGTACCCGGAT
GGGCGCAGGGGTGGTTCGAGTGGCCGGACCGGGAACACTTCAACCAGTGC
GCCTACCGCCACGGCTTCATGGCTTTGTTCGGGGGAGCCTTCCCCTCTGC
TGGGGTGAGCTTGCAGGCGTTGGGGGGTGCGAGCTGCTTCGCGCTAACGA
TGAACAGGTGGGCAAAAGTCAAGCAGTTTCCTTGAGATAAATATAAATAA
TATTTGTTGGGTAGAGAAATGAAGGCTCCGGGTCATTGCGGACGCATACG
GAATGATTGTGAAATCGTGGTCCCGTCGGAGGTATTCGAGGTCGGTCTGA
GTGAGCGCGAGACTTTTCTTTGGGTACAGCGAGATCAGAGAGTTTACAGT
ACGCAGAAGCAGCGGGGAAACGAATCGATCCAACGTCTTGATCCCCCCAG
ATCTATGCCTAGTTGCGCTGGCCCAACGGTAGGCACACGAAGCAGCAAAT
TGTTTATGCAGACACGACTGAAATCAAGACGCTCGATCACCCAACCACCC
TTTGTCGAAGGACATGCGATCATATTGTGTGAGCCTCCCGCATTCCTCGG
CCGAAGCCGCCCGCGTCCCTTCCGTGACACGGTCTTCTCCATCGTTAAAT
GTCTTCGGGCGCCCGGTGGTAATTTCTTGTTGCTGCCCCCTTCCACCACT
CAGGAACTCCCCTCCACTCCAGCGAGATGAAAACGGTCAGGTGGCCGAGA
TCAGGCTGCCGGCAAAGAAGACGATCGCGCTTTCCTTCATCACGGTTGTA
CTGTGCGTCGTGGCCGGGAACTTCATCGGGGGCTTCGCAGCAAATATTTT
CGGAGAGTACTATTTGCTGCGGGAGTCGTACATCGTGAGTGTTTTTTTTT
GCCGCTGCTTTCAAAATTCCACCAGCACGTGGAGCGAGTCCCAGCTTCGG
TCGTAGAGAGGAGACGCGGTTGCCCCGTGCAGGATCTTGCCTGGCCCAGA
CAGTGTACCCCATCCATTGGTTCGTTTTGAGTTGCATTTGTTGTTTTCGC
GCTCAACCGCCGGATAGAGCAAATATATATATATATATATATATATATAT
ATCGGGTATATATCATAGTTTACTACTATTATAATATTGTACTATTGTAG
TGTTTTTATTTATACCAGTGATGTCGGTTCCGGCGATTCCGGAATTAGCC
GGAACGATATCTAGCCGGCCGTATTTTTTCTCCCCCACGGAACTCAAGGG
GGCTCCGTACAATTTTATACCACCCCTGCCTGAGGGGCCCGCATTCAAAG
AACAGCAGCACAGCACCAGCAGCAAGCACACAACCACAGCAACACACACA
GTCCCAGCGTCCCAGCGGCAGCAGCTTTGTTGGGCTGTCTTGAGGGTACA
GCAGCAGTAGTAGCCTACAGTTGTTTTTGTTGTTGTTGGTCATACATTTA
GCAGAAGATCAACCGGACTTGGTTGTCTTCTGCTCGTGGTCAGCTGAACA
GGAAAATAATTTTCCCCTGTCCCGTAAAAAAACGTAAAATAGAGCATTCT
GATTCTACGGCCCCCCGGGTATTACGGGGGCCCCCGTGTTGCCGGAATTC
CAATTGCCAAAAGTAGGTAATTCCACGGACGGAATCGCGTCAAATCGCCG
GAACCGACATGACTCATTAATACTACTATAGTGTGATACTACTATAGTAT
GCTACTACTATTATTACTATTGTGTGTTACTACTATTATTACTATAGTAT
GCTACTACTATTATTACTATAGTTTGCTACTACTATGAACTCATTCCAAC
CCTCCGAACATCCACACCTTCTTGTACTATTATACTACTAATACTATTGC
TACTATTACTACTACTACTATAGTGTACTACTATTATTACTATAGTGTAC
TACTTTTATAGTGTAGTACTTATATTAATATTAATAAGACAGCCGACAGA
ACAACTTTGGGGTGATGAGTTCGTATATTGCGCTTTGTGGACAGAGCGGC
TGGTGATGTTCCTCGACTCGAAACCTCTCTCTCGGTGTGTCTAATTCCCT
CGTCCCTCCCTCGTGGCAGGCTGTGGCGATCCAGCTCAGTTTTTTGGCCG
CCGGATCTACAATCACCACCTGGAGGGACCCCAAAGACGGCCCCGAGATC
GCCCAGCGGCGAGGGAAGATGGGCAGAAGAGACTGAATCGTCTCGACGAC
AATGCGCCAGCGATCGGCGCTCGTCACTTGACGGCAAAACCTTACGACAC
GCAGAGTTTTGGATTTCACCCCGGGGACGGTTTATCTTTTTCTGAGACGG
TGGTTAACGACGATAGCCGATAGCGTCGATCATGCATGCGCTCGGTAGGG
ACGCGAAAGAAACGGTCGGTGGGGGTAGGGCTACGGAATAAGGATGCAGC
ACCGCGGAGTTGCTTCAAGATCTCGTGAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig20603:190..3270+

>mRNA_H-elongata_contig20603.5887.1 ID=mRNA_H-elongata_contig20603.5887.1|Name=mRNA_H-elongata_contig20603.5887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig20603:190..3270+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTTGCGGCTCAAGCAGGCGGTCAAGGGAAACCTAAAGATGGCCTT
GCGGCTCAAGCAGGCGGTCAAGGGAAACCTAAAGGCGAACGATGAAGCGC
GGGAAATGGACAGCTATCAGTCGGCGAAGGAAACGTACCTGAAAAAGAAG
AACAGCTTTTTGAAGGTACCCGGATGGGCGCAGGGGTGGTTCGAGTGGCC
GGACCGGGAACACTTCAACCAGTGCGCCTACCGCCACGGCTTCATGGCTT
TGTTCGGGGGAGCCTTCCCCTCTGCTGGGGTGAGCTTGCAGGCGTTGGGG
GGTGCGAGCTGCTTCGCGCTAACGATGAACAGGCGAACGATGAAGCGCGG
GAAATGGACAGCTATCAGTCGGCGAAGGAAACGTACCTGAAAAAGAAGAA
CAGCTTTTTGAAGGTACCCGGATGGGCGCAGGGGTGGTTCGAGTGGCCGG
ACCGGGAACACTTCAACCAGTGCGCCTACCGCCACGGCTTCATGGCTTTG
TTCGGGGGAGCCTTCCCCTCTGCTGGGGTGAGCTTGCAGGCGTTGGGGGG
TGCGAGCTGCTTCGCGCTAACGATGAACAGGAACTCCCCTCCACTCCAGC
GAGATGAAAACGGTCAGGTGGCCGAGATCAGGCTGCCGGCAAAGAAGACG
ATCGCGCTTTCCTTCATCACGGTTGTACTGTGCGTCGTGGCCGGGAACTT
CATCGGGGGCTTCGCAGCAAATATTTTCGGAGAGTACTATTTGCTGCGGG
AGTCGTACATCGAACTCCCCTCCACTCCAGCGAGATGAAAACGGTCAGGT
GGCCGAGATCAGGCTGCCGGCAAAGAAGACGATCGCGCTTTCCTTCATCA
CGGTTGTACTGTGCGTCGTGGCCGGGAACTTCATCGGGGGCTTCGCAGCA
AATATTTTCGGAGAGTACTATTTGCTGCGGGAGTCGTACATCGCTGTGGC
GATCCAGCTCAGTTTTTTGGCCGCCGGATCTACAATCACCACCTGGAGGG
ACCCCAAAGACGGCCCCGAGATCGCCCAGCGGCGAGGGAAGATGGGCAGA
AGAGACTGAGCTGTGGCGATCCAGCTCAGTTTTTTGGCCGCCGGATCTAC
AATCACCACCTGGAGGGACCCCAAAGACGGCCCCGAGATCGCCCAGCGGC
GAGGGAAGATGGGCAGAAGAGACTGA
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