mRNA_H-elongata_contig205982.5884.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI) HSP 1 Score: 110 bits (276), Expect = 1.540e-26 Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVR 225
+ALPIFLGNLVP WLAVILSVSLVLFFGEI PSA+FTG+ QLAIA+ M+W VY LM +L P+AWP++WML R
Sbjct: 279 EALPIFLGNLVPSWLAVILSVSLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDR 350
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE) HSP 1 Score: 109 bits (273), Expect = 4.480e-26 Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVR 225
+ALPIFLGNLVP WLAVILSV+LVLFFGEI PSA+FTG+ QLAIA+ M+W VY LM +L P+AWP++WML R
Sbjct: 276 EALPIFLGNLVPSWLAVILSVTLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDR 347
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S3XXY8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY8_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 2.790e-21 Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVRLARVGKE 246
+ALPIFL LVP+W+AV+LSVSL+L FGEILPSAIFTG QL++ +N W V LM + PLAWPL W+L R+ VG E
Sbjct: 70 EALPIFLDELVPEWVAVLLSVSLLLIFGEILPSAIFTGPRQLSVVSNCIWLVRVLMGVFLPLAWPLGWVLDRV--VGHE 146
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S0NQB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQB0_9EUKA) HSP 1 Score: 89.0 bits (219), Expect = 2.310e-20 Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVRL 228
+ALP+FL LVP W A+++SV+ VLF GEI+P+AIFTG A+L IAA ++ V+ MF LSPLAWPL+WML RL
Sbjct: 60 EALPLFLDELVPSWAAILISVTAVLFLGEIMPAAIFTGPAKLRIAAALSSLVWGCMFFLSPLAWPLAWMLDRL 132
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S0IV86_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IV86_9EUKA) HSP 1 Score: 81.6 bits (200), Expect = 4.620e-18 Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVRL 228
+ALPIFL LVP +AV+++V+ VLF GEI+P+A+FTG +L IAA++A FV+ M +LSPLAWPL+W+L RL
Sbjct: 11 EALPIFLDALVPPLIAVLIAVTAVLFVGEIIPAAVFTGPNKLQIAASLAPFVWGAMALLSPLAWPLAWLLDRL 83
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A812S5I8_9DINO (CBSDUF5 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812S5I8_9DINO) HSP 1 Score: 86.3 bits (212), Expect = 7.830e-18 Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLS 210
+ALP+FL +VP WLAV+LSVSLVL FGEI+PSA+FTG QL++AA + V A MF+LSP+AWP++
Sbjct: 148 EALPLFLDQIVPSWLAVVLSVSLVLMFGEIIPSAVFTGSEQLSMAARFSGLVSAFMFLLSPVAWPIA 214
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A812XK85_SYMPI (CBSDUF5 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XK85_SYMPI) HSP 1 Score: 85.1 bits (209), Expect = 2.040e-17 Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLS 210
+ALP+FL +VP WLAV+LSVSLVL FGEI+PSA+FTG QL++AA + V A+MF+L+P+AWP++
Sbjct: 491 EALPLFLDQVVPSWLAVLLSVSLVLMFGEIIPSAVFTGSEQLSMAARFSGLVSAIMFLLTPVAWPIA 557
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A4D9CY62_9STRA (Uncharacterized protein ycf23 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY62_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.780e-17 Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVR 225
+ LP+FL LVP ++AV+LSV++VL FGEILPSA+F+G QL IAA MA FV+ LM +LSP+++PLSW+L R
Sbjct: 261 ETLPLFLDRLVPSYVAVLLSVTMVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDR 332
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S0FFB4_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FFB4_9DINO) HSP 1 Score: 84.0 bits (206), Expect = 5.020e-17 Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query: 10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWML 219
+ALP+FL LVP WLA +LSVS+VL FGEI+PSA+FTG QL +AA M+ V A+ F+L PLAWPLS ML
Sbjct: 214 EALPLFLDKLVPAWLACLLSVSVVLIFGEIIPSAVFTGPKQLLLAARMSPLVRAVKFVLLPLAWPLSLML 283
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A835ZJ67_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ67_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 5.140e-17 Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1
Query: 7 AQALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLS 210
A ALPIFL NL+P + AVI+SV+LVLFFGEILP+A FTG QL IA+++ W V+ALM + SP+AWP++
Sbjct: 285 ACALPIFLDNLLPAYQAVIMSVTLVLFFGEILPTAFFTGPDQLRIASSLTWVVWALMAVFSPVAWPIA 352 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig205982.5884.1 >prot_H-elongata_contig205982.5884.1 ID=prot_H-elongata_contig205982.5884.1|Name=mRNA_H-elongata_contig205982.5884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp GTAQALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANback to top mRNA from alignment at H-elongata_contig205982:375..629- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig205982.5884.1 ID=mRNA_H-elongata_contig205982.5884.1|Name=mRNA_H-elongata_contig205982.5884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig205982:375..629- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig205982:375..629- >mRNA_H-elongata_contig205982.5884.1 ID=mRNA_H-elongata_contig205982.5884.1|Name=mRNA_H-elongata_contig205982.5884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig205982:375..629- (Himanthalia elongata Himel1 dioecious)back to top |