mRNA_H-elongata_contig205982.5884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205982.5884.1
Unique NamemRNA_H-elongata_contig205982.5884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: D7FXS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS4_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.540e-26
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVR 225
            +ALPIFLGNLVP WLAVILSVSLVLFFGEI PSA+FTG+ QLAIA+ M+W VY LM +L P+AWP++WML R
Sbjct:  279 EALPIFLGNLVPSWLAVILSVSLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDR 350          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A6H5KPI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPI7_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 4.480e-26
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVR 225
            +ALPIFLGNLVP WLAVILSV+LVLFFGEI PSA+FTG+ QLAIA+ M+W VY LM +L P+AWP++WML R
Sbjct:  276 EALPIFLGNLVPSWLAVILSVTLVLFFGEIFPSAVFTGKNQLAIASGMSWLVYTLMMVLGPVAWPIAWMLDR 347          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S3XXY8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY8_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 2.790e-21
Identity = 49/79 (62.03%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVRLARVGKE 246
            +ALPIFL  LVP+W+AV+LSVSL+L FGEILPSAIFTG  QL++ +N  W V  LM +  PLAWPL W+L R+  VG E
Sbjct:   70 EALPIFLDELVPEWVAVLLSVSLLLIFGEILPSAIFTGPRQLSVVSNCIWLVRVLMGVFLPLAWPLGWVLDRV--VGHE 146          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S0NQB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NQB0_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 2.310e-20
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVRL 228
            +ALP+FL  LVP W A+++SV+ VLF GEI+P+AIFTG A+L IAA ++  V+  MF LSPLAWPL+WML RL
Sbjct:   60 EALPLFLDELVPSWAAILISVTAVLFLGEIMPAAIFTGPAKLRIAAALSSLVWGCMFFLSPLAWPLAWMLDRL 132          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S0IV86_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IV86_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 4.620e-18
Identity = 43/73 (58.90%), Postives = 59/73 (80.82%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVRL 228
            +ALPIFL  LVP  +AV+++V+ VLF GEI+P+A+FTG  +L IAA++A FV+  M +LSPLAWPL+W+L RL
Sbjct:   11 EALPIFLDALVPPLIAVLIAVTAVLFVGEIIPAAVFTGPNKLQIAASLAPFVWGAMALLSPLAWPLAWLLDRL 83          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A812S5I8_9DINO (CBSDUF5 protein n=5 Tax=Symbiodinium TaxID=2949 RepID=A0A812S5I8_9DINO)

HSP 1 Score: 86.3 bits (212), Expect = 7.830e-18
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLS 210
            +ALP+FL  +VP WLAV+LSVSLVL FGEI+PSA+FTG  QL++AA  +  V A MF+LSP+AWP++
Sbjct:  148 EALPLFLDQIVPSWLAVVLSVSLVLMFGEIIPSAVFTGSEQLSMAARFSGLVSAFMFLLSPVAWPIA 214          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A812XK85_SYMPI (CBSDUF5 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XK85_SYMPI)

HSP 1 Score: 85.1 bits (209), Expect = 2.040e-17
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLS 210
            +ALP+FL  +VP WLAV+LSVSLVL FGEI+PSA+FTG  QL++AA  +  V A+MF+L+P+AWP++
Sbjct:  491 EALPLFLDQVVPSWLAVLLSVSLVLMFGEIIPSAVFTGSEQLSMAARFSGLVSAIMFLLTPVAWPIA 557          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A4D9CY62_9STRA (Uncharacterized protein ycf23 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY62_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.780e-17
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWMLVR 225
            + LP+FL  LVP ++AV+LSV++VL FGEILPSA+F+G  QL IAA MA FV+ LM +LSP+++PLSW+L R
Sbjct:  261 ETLPLFLDRLVPSYVAVLLSVTMVLIFGEILPSALFSGPNQLKIAARMASFVWFLMLVLSPISYPLSWLLDR 332          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A7S0FFB4_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FFB4_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 5.020e-17
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:   10 QALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLSWML 219
            +ALP+FL  LVP WLA +LSVS+VL FGEI+PSA+FTG  QL +AA M+  V A+ F+L PLAWPLS ML
Sbjct:  214 EALPLFLDKLVPAWLACLLSVSVVLIFGEIIPSAVFTGPKQLLLAARMSPLVRAVKFVLLPLAWPLSLML 283          
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Match: A0A835ZJ67_9STRA (CNNM transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ67_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.140e-17
Identity = 43/68 (63.24%), Postives = 56/68 (82.35%), Query Frame = 1
Query:    7 AQALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAANMAWFVYALMFILSPLAWPLS 210
            A ALPIFL NL+P + AVI+SV+LVLFFGEILP+A FTG  QL IA+++ W V+ALM + SP+AWP++
Sbjct:  285 ACALPIFLDNLLPAYQAVIMSVTLVLFFGEILPTAFFTGPDQLRIASSLTWVVWALMAVFSPVAWPIA 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205982.5884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS4_ECTSI1.540e-2675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPI7_9PHAE4.480e-2673.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XXY8_HETAK2.790e-2162.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0NQB0_9EUKA2.310e-2061.64Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S0IV86_9EUKA4.620e-1858.90Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A812S5I8_9DINO7.830e-1862.69CBSDUF5 protein n=5 Tax=Symbiodinium TaxID=2949 Re... [more]
A0A812XK85_SYMPI2.040e-1761.19CBSDUF5 protein n=1 Tax=Symbiodinium pilosum TaxID... [more]
A0A4D9CY62_9STRA2.780e-1761.11Uncharacterized protein ycf23 n=1 Tax=Nannochlorop... [more]
A0A7S0FFB4_9DINO5.020e-1764.29Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A835ZJ67_9STRA5.140e-1763.24CNNM transmembrane domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205982contigH-elongata_contig205982:375..629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog2880.D7FXS4
KEGG koko:K16302
KEGG TC9.A.40.3
EggNOG free text desc.magnesium ion homeostasis
EggNOG OGsCOG1253@1,KOG2118@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.8994334-CDS-H-elongata_contig205982:374..6291622930152.8994334-CDS-H-elongata_contig205982:374..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205982 375..629 -
1691679301.3762531-CDS-H-elongata_contig205982:374..6291691679301.3762531-CDS-H-elongata_contig205982:374..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205982 375..629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205982.5884.1prot_H-elongata_contig205982.5884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205982 375..629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205982.5884.1

>prot_H-elongata_contig205982.5884.1 ID=prot_H-elongata_contig205982.5884.1|Name=mRNA_H-elongata_contig205982.5884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=85bp
GTAQALPIFLGNLVPDWLAVILSVSLVLFFGEILPSAIFTGRAQLAIAAN
MAWFVYALMFILSPLAWPLSWMLVRLARVGKELGR
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mRNA from alignment at H-elongata_contig205982:375..629-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205982.5884.1 ID=mRNA_H-elongata_contig205982.5884.1|Name=mRNA_H-elongata_contig205982.5884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=255bp|location=Sequence derived from alignment at H-elongata_contig205982:375..629- (Himanthalia elongata Himel1 dioecious)
GGAACGGCGCAGGCCCTTCCGATATTTCTCGGAAACCTTGTCCCGGACTG GCTGGCCGTGATCCTTTCCGTGTCACTGGTGCTATTCTTCGGTGAGATCC TTCCCTCGGCCATCTTCACCGGGAGGGCGCAGCTCGCCATAGCAGCCAAC ATGGCGTGGTTCGTGTACGCGCTCATGTTTATCCTGTCCCCGTTGGCTTG GCCGCTGTCGTGGATGCTGGTGAGGCTTGCTAGAGTTGGTAAAGAGCTAG GCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig205982:375..629-

>mRNA_H-elongata_contig205982.5884.1 ID=mRNA_H-elongata_contig205982.5884.1|Name=mRNA_H-elongata_contig205982.5884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at H-elongata_contig205982:375..629- (Himanthalia elongata Himel1 dioecious)
GGAACGGCGCAGGCCCTTCCGATATTTCTCGGAAACCTTGTCCCGGACTG
GCTGGCCGTGATCCTTTCCGTGTCACTGGTGCTATTCTTCGGTGAGATCC
TTCCCTCGGCCATCTTCACCGGGAGGGCGCAGCTCGCCATAGCAGCCAAC
ATGGCGTGGTTCGTGTACGCGCTCATGTTTATCCTGTCCCCGTTGGCTTG
GCCGCTGTCGTGGATGCTGGTGAGGCTTGCTAGAGTTGGTAAAGAGCTAG
GCCGCGGAACGGCGCAGGCCCTTCCGATATTTCTCGGAAACCTTGTCCCG
GACTGGCTGGCCGTGATCCTTTCCGTGTCACTGGTGCTATTCTTCGGTGA
GATCCTTCCCTCGGCCATCTTCACCGGGAGGGCGCAGCTCGCCATAGCAG
CCAACATGGCGTGGTTCGTGTACGCGCTCATGTTTATCCTGTCCCCGTTG
GCTTGGCCGCTGTCGTGGATGCTGGTGAGGCTTGCTAGAGTTGGTAAAGA
GCTAGGCCGC
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