mRNA_H-elongata_contig205973.5883.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205973.5883.1
Unique NamemRNA_H-elongata_contig205973.5883.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: D7FRV7_ECTSI (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRV7_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.020e-20
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 ASQLLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            A +LLA+MEFR TDH+SE+QLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK
Sbjct:  331 AEELLANMEFRPTDHASERQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 383
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A6H5JL08_9PHAE (Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL08_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.090e-20
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 ASQLLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            A +LLA+MEFR TDH+SEKQLKLDVIAVYNHRLDEREKRK+FVIE+NLLDYKK
Sbjct:  347 AEELLANMEFRPTDHASEKQLKLDVIAVYNHRLDEREKRKKFVIENNLLDYKK 399
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A067C7N6_SAPPC (Transcriptional adapter n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C7N6_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-13
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VIA+YN +LDERE+RK+FVIEH LLDYKK
Sbjct:  175 ILADMEFHDDDHPTERELKLKVIAIYNAKLDERERRKKFVIEHGLLDYKK 224
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A3R6XSD6_9STRA (Transcriptional adapter n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XSD6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.390e-13
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VIA+YN +LDERE+RK+FV+EH LLDYKK
Sbjct:  172 ILADMEFADDDHPTERELKLKVIAIYNAKLDERERRKKFVVEHQLLDYKK 221
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A024UKU7_9STRA (Transcriptional adapter n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UKU7_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.520e-13
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VIA+YN +LDERE+RK+FVIEH LLDYKK
Sbjct:  177 ILADMEFSEDDHPTERELKLKVIAIYNAKLDERERRKKFVIEHQLLDYKK 226
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: W4G8S8_9STRA (Transcriptional adapter n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G8S8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.080e-13
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VIA+YN +LDERE+RK+FV+EH LLDYKK
Sbjct:  182 ILADMEFADDDHPTERELKLKVIAIYNAKLDERERRKKFVVEHQLLDYKK 231
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BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A6G0XE69_9STRA (Transcriptional adapter n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE69_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.800e-13
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VI++YN +LDERE+RK+FVIEH LLDYKK
Sbjct:  169 ILADMEFHEDDHPTERELKLKVISIYNAKLDERERRKKFVIEHQLLDYKK 218
[Close]
BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A1W0A0X6_9STRA (Transcriptional adapter n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0X6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.820e-13
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VI++YN +LDERE+RK+FVIEH LLDYKK
Sbjct:  177 ILADMEFHDDDHPTERELKLKVISIYNAKLDERERRKKFVIEHGLLDYKK 226
[Close]
BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A485LTC7_9STRA (Transcriptional adapter n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LTC7_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.840e-13
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VI++YN +LDERE+RK+FVIEH LLDYKK
Sbjct:  175 ILADMEFNDDDHPTERELKLKVISIYNAKLDERERRKKFVIEHQLLDYKK 224
[Close]
BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Match: A0A1V9Z5Y1_9STRA (Transcriptional adapter n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Y1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.280e-13
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:   10 LLADMEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK 159
            +LADMEF   DH +E++LKL VI +YN +LDERE+RK+FVIEH LLDYKK
Sbjct:  175 ILADMEFHEDDHPTERELKLKVIEIYNAKLDERERRKKFVIEHGLLDYKK 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205973.5883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRV7_ECTSI1.020e-2088.68Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL08_9PHAE9.090e-2086.79Transcriptional adapter n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067C7N6_SAPPC1.100e-1370.00Transcriptional adapter n=2 Tax=Saprolegnia TaxID=... [more]
A0A3R6XSD6_9STRA1.390e-1368.00Transcriptional adapter n=3 Tax=Aphanomyces astaci... [more]
A0A024UKU7_9STRA1.520e-1370.00Transcriptional adapter n=2 Tax=Aphanomyces invada... [more]
W4G8S8_9STRA2.080e-1368.00Transcriptional adapter n=3 Tax=Aphanomyces astaci... [more]
A0A6G0XE69_9STRA2.800e-1368.00Transcriptional adapter n=1 Tax=Aphanomyces euteic... [more]
A0A1W0A0X6_9STRA2.820e-1368.00Transcriptional adapter n=1 Tax=Thraustotheca clav... [more]
A0A485LTC7_9STRA2.840e-1368.00Transcriptional adapter n=1 Tax=Aphanomyces stella... [more]
A0A1V9Z5Y1_9STRA5.280e-1368.00Transcriptional adapter n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205973contigH-elongata_contig205973:246..404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog2880.D7FRV7
Preferred nameTADA2A
KEGG rclassRC00505,RC00738,RC02795
KEGG koko:K00457,ko:K03012,ko:K10391,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443,R01372,R02521
KEGG Pathwayko00130,ko00230,ko00240,ko00350,ko00360,ko01100,ko03020,ko05016,ko05169,map00130,map00230,map00240,map00350,map00360,map01100,map03020,map05016,map05169
KEGG ModuleM00044,M00180
GOsGO:0000018,GO:0000123,GO:0000124,GO:0000125,GO:0000183,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000981,GO:0001786,GO:0001932,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005671,GO:0005694,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006325,GO:0006338,GO:0006342,GO:0006348,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0006974,GO:0006996,GO:0007049,GO:0007155,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009266,GO:0009299,GO:0009405,GO:0009409,GO:0009628,GO:0009631,GO:0009719,GO:0009725,GO:0009733,GO:0009735,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010520,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010810,GO:0010811,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0022610,GO:0030155,GO:0030447,GO:0031056,GO:0031058,GO:0031063,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031505,GO:0031589,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032502,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035065,GO:0035066,GO:0035327,GO:0035690,GO:0036211,GO:0040007,GO:0040020,GO:0040029,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042710,GO:0042789,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043565,GO:0043708,GO:0043709,GO:0043900,GO:0043902,GO:0043966,GO:0043967,GO:0044010,GO:0044111,GO:0044114,GO:0044115,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044764,GO:0045229,GO:0045785,GO:0045814,GO:0045892,GO:0045934,GO:0045935,GO:0046483,GO:0046695,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051445,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0060631,GO:0065007,GO:0065008,GO:0070013,GO:0070461,GO:0070887,GO:0071214,GO:0071470,GO:0071554,GO:0071555,GO:0071704,GO:0071840,GO:0071852,GO:0072341,GO:0072686,GO:0080090,GO:0090043,GO:0090304,GO:0090311,GO:0090605,GO:0090609,GO:0097159,GO:0097659,GO:0104004,GO:0140110,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901983,GO:1901985,GO:1902275,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1905368,GO:1990234,GO:1990414,GO:2000112,GO:2000113,GO:2000241,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.positive regulation of histone acetylation
EggNOG OGsCOG5114@1,KOG0457@2759
EC1.13.11.27
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400,ko04147,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.835568-CDS-H-elongata_contig205973:245..3831622930152.835568-CDS-H-elongata_contig205973:245..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205973 246..383 -
1691679301.3535244-CDS-H-elongata_contig205973:245..3831691679301.3535244-CDS-H-elongata_contig205973:245..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205973 246..383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.8579571-UTR-H-elongata_contig205973:383..4041622930152.8579571-UTR-H-elongata_contig205973:383..404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig205973 384..404 -
1691679301.3643353-UTR-H-elongata_contig205973:383..4041691679301.3643353-UTR-H-elongata_contig205973:383..404Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig205973 384..404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205973.5883.1prot_H-elongata_contig205973.5883.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205973 246..383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205973.5883.1

>prot_H-elongata_contig205973.5883.1 ID=prot_H-elongata_contig205973.5883.1|Name=mRNA_H-elongata_contig205973.5883.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MEFRSTDHSSEKQLKLDVIAVYNHRLDEREKRKRFVIEHNLLDYKK
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mRNA from alignment at H-elongata_contig205973:246..404-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205973.5883.1 ID=mRNA_H-elongata_contig205973.5883.1|Name=mRNA_H-elongata_contig205973.5883.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig205973:246..404- (Himanthalia elongata Himel1 dioecious)
GCCTCACAGCTATTAGCGGACATGGAGTTCCGTTCGACGGACCACTCGAG
CGAAAAGCAGTTGAAGCTGGACGTGATCGCGGTGTACAACCACCGCCTCG
ACGAGAGGGAGAAGCGCAAGCGGTTCGTGATTGAACACAACCTGTTGGAC
TACAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig205973:246..404-

>mRNA_H-elongata_contig205973.5883.1 ID=mRNA_H-elongata_contig205973.5883.1|Name=mRNA_H-elongata_contig205973.5883.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig205973:246..404- (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCCGTTCGACGGACCACTCGAGCGAAAAGCAGTTGAAGCTGGA
CGTGATCGCGGTGTACAACCACCGCCTCGACGAGAGGGAGAAGCGCAAGC
GGTTCGTGATTGAACACAACCTGTTGGACTACAAGAAGATGGAGTTCCGT
TCGACGGACCACTCGAGCGAAAAGCAGTTGAAGCTGGACGTGATCGCGGT
GTACAACCACCGCCTCGACGAGAGGGAGAAGCGCAAGCGGTTCGTGATTG
AACACAACCTGTTGGACTACAAGAAG
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