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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-00_010820.1 |
| Exons | 3 |
| Model size | 523 |
| Cds size | 522 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930152.626674-CDS-H-elongata_contig20592:1889..1929 | 1622930152.626674-CDS-H-elongata_contig20592:1889..1929 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig20592 1890..1929 - |
| 1691679301.275876-CDS-H-elongata_contig20592:1889..1929 | 1691679301.275876-CDS-H-elongata_contig20592:1889..1929 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig20592 1890..1929 - |
| 1622930152.6389127-CDS-H-elongata_contig20592:2910..3151 | 1622930152.6389127-CDS-H-elongata_contig20592:2910..3151 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig20592 2911..3151 - |
| 1691679301.283457-CDS-H-elongata_contig20592:2910..3151 | 1691679301.283457-CDS-H-elongata_contig20592:2910..3151 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig20592 2911..3151 - |
| 1622930152.6507597-CDS-H-elongata_contig20592:3360..3601 | 1622930152.6507597-CDS-H-elongata_contig20592:3360..3601 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig20592 3361..3601 - |
| 1691679301.291716-CDS-H-elongata_contig20592:3360..3601 | 1691679301.291716-CDS-H-elongata_contig20592:3360..3601 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig20592 3361..3601 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20592.5880.1 >prot_H-elongata_contig20592.5880.1 ID=prot_H-elongata_contig20592.5880.1|Name=mRNA_H-elongata_contig20592.5880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
RKSRGPYSRSASPGIQLRCQRGTVSESEYLIEARVTAEKYFLLRYKARWH
EIAMFHRLMETDANRRPATETLDRVHRAIRDTACENLPPGCLSREQFIAT
ISRALKSCNIPTLHRLYSTFDPDGTDIVRYVDILACLFATHKPETQAFLE
GLQQTFIGNLGAISRELHRELTKD back to topmRNA from alignment at H-elongata_contig20592:1889..3601- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig20592.5880.1 ID=mRNA_H-elongata_contig20592.5880.1|Name=mRNA_H-elongata_contig20592.5880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at H-elongata_contig20592:1889..3601- (Himanthalia elongata Himel1 dioecious)
AGAAAGAGTCGAGGACCATACTCCCGATCAGCTTCTCCGGGAATTCAACT
ACGCTGCCAACGGGGCACCGTGAGTGAATCTGAGTATTTAATAGAAGCTA
GGGTAACGGCCGAGAAATATTTCTTGCTCCGGTACAAGGCCCGGTGGCAT
GAGATTGCCATGTTTCATCGCTTAATGGAGACGGACGCCAATCGACGGCC
AGCGACGGAGACTTTAGATCGTGTCCATCGAGCAATCAGAGGTACGAGTA
TTATGTAGGTGGGTTCAAGCTAGCCATAGTTTACGTTTATTACGTAGATC
TCCAAGGCGGGTTTGTATGGTCGCTATACCAAATACTTACGCCATGCCCC
AAGCCAACTAAATATAATCAGACATCGGTGCCACCGATCTCGCCAATGTG
GAGCAGTACCCTACTCCCTTCCCGACCTCATAATTCCTGCCCCCTACCAG
ACACGGCATGCGAAAACCTTCCGCCAGGGTGTCTTTCTCGAGAGCAGTTC
ATCGCCACGATTTCAAGAGCGTTGAAGTCCTGCAATATACCGACCCTCCA
CCGACTGTACAGCACCTTCGATCCAGACGGTACGGATATAGTACGATACG
TGGATATCCTGGCGTGTCTTTTTGCCACGCATAAGCCAGAGACGCAAGCG
TTTTTGGAAGGACTGCAGCAAACCTTCATCGGCAATCTAGGGTGAGGATA
AGAGCGAAAACCTTTTCGAGCAAATAGTTCTAACCTCTAGTACATTTTTT
GCCTCTCCTTCGCGAGGCAAACACCGCGGTCGCCCTACGCCGGTCATTCT
CGCAGAGACATTTATTAGCGTTCAGATGGTGCAAACTTATCGAGCGCGTA
TAGTGAGCGTAGGCGTGCACGTATACAGTTCCTGTGACGGTTTCATACGT
GTCCTCACACTTCCGTGCCGCTATGTACCTCATACACTTCGTTAAACGCA
AGTTGGGGTGCTTAATCCTTTTACATATCGTACATGCCAACTGTACCAAT
ACCGGGTGTGGAAAGAGAGGTGCACAATAACTGGTCCATGGGGTTACGTG
AATAGGCTGCACCCGTTACTCAGGCAACCTTGAAGACTATTGGCTCAGTG
CCGGCGGATCCTCGGTGGTAAACGCCATCGGTACGCAATTGCGTGACCTG
ATGAACTCGGGATTGTTCCGATGGCGGTTGACGGTAGAGATGGACGCCAT
CGCGGAAAACGAGAGGATCTCGGAAGTACGGACCATATTCAGCCTGGTTT
GAGAGATAGAGCAGACTGACACGGGATGGGACTGCCGAACCCGTCTCGCG
AGACCAAATTCTTAAGCTCGAACGGGGACAGATTTTTTTTTTTTCCTGTT
CAGCTGACCATAAGCAGGAAACAACCAAATACTTGATGACCAAATACGCA
AAGAATGTTTTCACAGGACATTATTCCCCTCTATATGAGAGCTGTCCTCC
GCAGCCAAGCGACTCGACAATGGATAGGATAGGAGTCTGTTCAAGAAACC
TCACCAAGAATTCTAGAAAGAAGTGCTTTCACGCGCGAGGAACTGATTGG
AGTACCGTCTATTAACACAGGGAGGGGAAATCTTCGGTTTGCCCTCGCGA
GGACTTTTTACCAGCATTCCAGAATGTACAAGTATATTTCTTATAAATCG
CCTCTACGGTGCTTCACTACAGGGCAATCAGCCGGGAGTTGCACAGGGAG
CTGACGAAGGACA back to topCoding sequence (CDS) from alignment at H-elongata_contig20592:1889..3601- >mRNA_H-elongata_contig20592.5880.1 ID=mRNA_H-elongata_contig20592.5880.1|Name=mRNA_H-elongata_contig20592.5880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig20592:1889..3601- (Himanthalia elongata Himel1 dioecious)
AGAAAGAGTCGAGGACCATACTCCCGATCAGCTTCTCCGGGAATTCAACT
ACGCTGCCAACGGGGCACCGTGAGTGAATCTGAGTATTTAATAGAAGCTA
GGGTAACGGCCGAGAAATATTTCTTGCTCCGGTACAAGGCCCGGTGGCAT
GAGATTGCCATGTTTCATCGCTTAATGGAGACGGACGCCAATCGACGGCC
AGCGACGGAGACTTTAGATCGTGTCCATCGAGCAATCAGAGAGAAAGAGT
CGAGGACCATACTCCCGATCAGCTTCTCCGGGAATTCAACTACGCTGCCA
ACGGGGCACCGTGAGTGAATCTGAGTATTTAATAGAAGCTAGGGTAACGG
CCGAGAAATATTTCTTGCTCCGGTACAAGGCCCGGTGGCATGAGATTGCC
ATGTTTCATCGCTTAATGGAGACGGACGCCAATCGACGGCCAGCGACGGA
GACTTTAGATCGTGTCCATCGAGCAATCAGAGACACGGCATGCGAAAACC
TTCCGCCAGGGTGTCTTTCTCGAGAGCAGTTCATCGCCACGATTTCAAGA
GCGTTGAAGTCCTGCAATATACCGACCCTCCACCGACTGTACAGCACCTT
CGATCCAGACGGTACGGATATAGTACGATACGTGGATATCCTGGCGTGTC
TTTTTGCCACGCATAAGCCAGAGACGCAAGCGTTTTTGGAAGGACTGCAG
CAAACCTTCATCGGCAATCTAGGACACGGCATGCGAAAACCTTCCGCCAG
GGTGTCTTTCTCGAGAGCAGTTCATCGCCACGATTTCAAGAGCGTTGAAG
TCCTGCAATATACCGACCCTCCACCGACTGTACAGCACCTTCGATCCAGA
CGGTACGGATATAGTACGATACGTGGATATCCTGGCGTGTCTTTTTGCCA
CGCATAAGCCAGAGACGCAAGCGTTTTTGGAAGGACTGCAGCAAACCTTC
ATCGGCAATCTAGGGGCAATCAGCCGGGAGTTGCACAGGGAGCTGACGAA
GGACGGCAATCAGCCGGGAGTTGCACAGGGAGCTGACGAAGGAC back to top
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