mRNA_H-elongata_contig205885.5879.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205885.5879.1
Unique NamemRNA_H-elongata_contig205885.5879.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205885.5879.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.780e-25
Identity = 69/114 (60.53%), Postives = 80/114 (70.18%), Query Frame = 1 
Query:    1 KVRTLVLATMLDSSAPRAACASASRVVAIMA-AGGEWPACWGGLIPSLLDRLALAATA---------SSGAERGGEQGRATSGG-VXXXXXXAESAIARAESCVKCLQYMTEEV 309
            +VRTL L TM+D SAPRAA ASASRVVA+MA AGGEWP+ WGGLIPSL+ +LA+AA A         S+ A RGG  GR  +G         AE A+ARAESC KCLQY+TEEV
Sbjct:  105 QVRTLALTTMIDVSAPRAARASASRVVALMATAGGEWPSGWGGLIPSLIGQLAIAAAAVENARAEAGSAEAPRGGVGGRGRAGERAEAAAVAAEHAVARAESCAKCLQYLTEEV 218
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BLAST of mRNA_H-elongata_contig205885.5879.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.930e-21
Identity = 66/105 (62.86%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:   28 MLDSSAPRAACASASRVVAIMA-AGGEWPACWGGLIPSLLDRLALAATASSGAERGGEQGRATSGGVXXXXXX----------AESAIARAESCVKCLQYMTEEV 309
            M+D SAPRAA ASASRVVA+MA AGGEWP+ WGGLIPSL+ +LA+AA A   A        A  GGVXXXXXX          AE A+ARAESC KCLQY+TEEV
Sbjct:    1 MIDVSAPRAARASASRVVALMATAGGEWPSGWGGLIPSLIGQLAMAAAAVENARAEAGSAEAPRGGVXXXXXXXXXXXXXXXXAEHAVARAESCAKCLQYLTEEV 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205885.5879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8B3_ECTSI1.780e-2560.53Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5L6E1_9PHAE6.930e-2162.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205885contigH-elongata_contig205885:628..936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog2880.D7G8B3
Preferred nameIPO9
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K20224
KEGG TC1.I.1
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5657@1,KOG2274@2759
EC2.7.1.48
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.5723662-CDS-H-elongata_contig205885:627..9091622930152.5723662-CDS-H-elongata_contig205885:627..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205885 628..909 -
1691679301.2367215-CDS-H-elongata_contig205885:627..9091691679301.2367215-CDS-H-elongata_contig205885:627..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205885 628..909 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.5839462-UTR-H-elongata_contig205885:909..9361622930152.5839462-UTR-H-elongata_contig205885:909..936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig205885 910..936 -
1691679301.2524729-UTR-H-elongata_contig205885:909..9361691679301.2524729-UTR-H-elongata_contig205885:909..936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig205885 910..936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205885.5879.1prot_H-elongata_contig205885.5879.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205885 628..909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205885.5879.1

>prot_H-elongata_contig205885.5879.1 ID=prot_H-elongata_contig205885.5879.1|Name=mRNA_H-elongata_contig205885.5879.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLDSSAPRAACASASRVVAIMAAGGEWPACWGGLIPSLLDRLALAATASS
GAERGGEQGRATSGGVGGAGGGAESAIARAESCVKCLQYMTEEV
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mRNA from alignment at H-elongata_contig205885:628..936-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205885.5879.1 ID=mRNA_H-elongata_contig205885.5879.1|Name=mRNA_H-elongata_contig205885.5879.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig205885:628..936- (Himanthalia elongata Himel1 dioecious)
AAGGTGCGAACGCTGGTCCTCGCCACGATGTTGGACTCCTCGGCCCCTCG
AGCGGCTTGCGCGTCCGCCTCGCGAGTCGTGGCCATCATGGCAGCGGGGG
GCGAGTGGCCGGCCTGCTGGGGAGGCCTGATTCCCTCGCTCCTGGACAGG
CTGGCTCTGGCGGCGACGGCGTCCTCCGGTGCGGAAAGGGGAGGCGAACA
AGGCAGAGCAACGAGTGGAGGCGTTGGTGGAGCGGGAGGAGGGGCGGAGA
GCGCCATCGCCCGTGCGGAATCGTGCGTGAAGTGCCTGCAGTATATGACG
GAAGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig205885:628..936-

>mRNA_H-elongata_contig205885.5879.1 ID=mRNA_H-elongata_contig205885.5879.1|Name=mRNA_H-elongata_contig205885.5879.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig205885:628..936- (Himanthalia elongata Himel1 dioecious)
ATGTTGGACTCCTCGGCCCCTCGAGCGGCTTGCGCGTCCGCCTCGCGAGT
CGTGGCCATCATGGCAGCGGGGGGCGAGTGGCCGGCCTGCTGGGGAGGCC
TGATTCCCTCGCTCCTGGACAGGCTGGCTCTGGCGGCGACGGCGTCCTCC
GGTGCGGAAAGGGGAGGCGAACAAGGCAGAGCAACGAGTGGAGGCGTTGG
TGGAGCGGGAGGAGGGGCGGAGAGCGCCATCGCCCGTGCGGAATCGTGCG
TGAAGTGCCTGCAGTATATGACGGAAGAGGTGATGTTGGACTCCTCGGCC
CCTCGAGCGGCTTGCGCGTCCGCCTCGCGAGTCGTGGCCATCATGGCAGC
GGGGGGCGAGTGGCCGGCCTGCTGGGGAGGCCTGATTCCCTCGCTCCTGG
ACAGGCTGGCTCTGGCGGCGACGGCGTCCTCCGGTGCGGAAAGGGGAGGC
GAACAAGGCAGAGCAACGAGTGGAGGCGTTGGTGGAGCGGGAGGAGGGGC
GGAGAGCGCCATCGCCCGTGCGGAATCGTGCGTGAAGTGCCTGCAGTATA
TGACGGAAGAGGTG
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