mRNA_H-elongata_contig20582.5876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20582.5876.1
Unique NamemRNA_H-elongata_contig20582.5876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: UPI001BB25ABF (probable protein phosphatase 2C 21 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB25ABF)

HSP 1 Score: 214 bits (544), Expect = 2.000e-56
Identity = 112/196 (57.14%), Postives = 144/196 (73.47%), Query Frame = 1 
Query:  658 GFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAVV-DGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVELHTPGAGALTGRAV 1242
            G D G+TAV+ALL G KTL VAN GDSRCV+SR G A+DMS DHKPED++EL RIEKAGG V  DGRV G LNLSRA GD  YK+  +L PEEQMI+A P+++T+ +TD+D+F+V+ACDG+WN+++SQE + FVR RL  S  +     LS +C +L D C A    GDGTG DN+T V+V+ H+  A +L+G  V
Sbjct:  388 GSDSGSTAVVALLRG-KTLTVANIGDSRCVLSRDGKALDMSYDHKPEDDIELRRIEKAGGKVTPDGRVNGGLNLSRAFGDHCYKLTTSLPPEEQMISAFPDIQTVTLTDQDDFMVVACDGIWNAMTSQEVIDFVRSRLENSVETDQTNKLSKICEELFDFCLAPDTSGDGTGCDNMTCVIVQFHSNNADSLSGATV 582
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A7M7NNI5_STRPU (PPM-type phosphatase domain-containing protein n=3 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NNI5_STRPU)

HSP 1 Score: 213 bits (542), Expect = 3.110e-55
Identity = 115/211 (54.50%), Postives = 154/211 (72.99%), Query Frame = 1 
Query:  658 GFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAVV-DGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVELHTPGAGALTGRAVARAGTANSDTKAEES 1287
            G D G+TAV+ALL G KTL VAN GDSRCV+SR GVA+DMS DHKPED+VEL RIEKAGG V  DGRV G LNLSRA GD  YK+  +L PEEQMI+A P+++T  +T++D+F+V+ACDG+WN+++SQ+ + FV  RL  S  S     LS +C +L D C +    GDGTG DN+T V+V+ H+ GA +++G +V+ A   +++ K EE+
Sbjct:  518 GSDSGSTAVVALLRG-KTLTVANIGDSRCVLSRDGVALDMSYDHKPEDDVELRRIEKAGGKVTPDGRVNGGLNLSRAFGDHCYKMTTSLPPEEQMISAFPDIKTATLTEQDDFMVVACDGIWNAMTSQDVIDFVTHRLENSRESDQSNKLSKICEELFDFCLSPDTSGDGTGCDNMTCVIVQFHSNGADSISGASVS-AKRKSAEDKPEET 726
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A7R9K321_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9K321_TIMGE)

HSP 1 Score: 198 bits (503), Expect = 1.030e-54
Identity = 114/184 (61.96%), Postives = 133/184 (72.28%), Query Frame = 1 
Query:  658 GFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAVV-DGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEIT-DEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVEL 1203
            G D G TAV+ALL   + L VANAGDSRCVV RKG A++MS DHKPED+VE+ RI KAGG V  DGRV G LNLSRA+GD  YK  E L  EEQMITA P++RTL I  DEDEF++LACDG+WNSLSSQE V FVR R++        L LS +CA+L D C A    GDGTG DN+TAV+V+ 
Sbjct:   16 GADSGCTAVVALLKD-QELYVANAGDSRCVVCRKGEAIEMSLDHKPEDDVEMERIVKAGGKVTGDGRVNGGLNLSRALGDHAYKQSENLPAEEQMITALPDVRTLMINPDEDEFMILACDGIWNSLSSQEVVDFVRPRIQEGH-----LKLSQICAELFDHCLAPNTLGDGTGCDNMTAVIVQF 193
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A553NGA5_9TELE (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553NGA5_9TELE)

HSP 1 Score: 197 bits (502), Expect = 1.040e-54
Identity = 106/181 (58.56%), Postives = 133/181 (73.48%), Query Frame = 1 
Query:  658 GFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAV-VDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLV 1197
            G D G TAV+AL + GK L+VANAGDSRCVVS KG A+DMS DHKPEDE+EL RI+ AGG + +DGRV G LNLSRAIGD  YK ++AL PEEQMI+A P+++ L + D+ +F+V+ACDG+WN LSSQE V FV ERL+     S P  LS +  +L D C A    GDGTG DN+T +++
Sbjct:    9 GSDSGTTAVVAL-IRGKQLIVANAGDSRCVVSEKGKALDMSYDHKPEDELELNRIKNAGGKITMDGRVNGGLNLSRAIGDHFYKRNKALPPEEQMISALPDVKVLTLNDDHDFMVIACDGIWNVLSSQEVVDFVEERLKNEDGKSKP--LSTIIDELLDHCLAPDTSGDGTGCDNMTCIII 186
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A671PLL9_9TELE (Protein phosphatase 1G-like n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A671PLL9_9TELE)

HSP 1 Score: 203 bits (516), Expect = 1.290e-54
Identity = 119/231 (51.52%), Postives = 155/231 (67.10%), Query Frame = 1 
Query:  637 LDTRRRCGFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAV-VDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVELHTPGAGALTGRAVARAGTANSDTKAEESGDIDLGDDGKRKK 1326
            +D +   G D G TAV+AL + GK L+VANAGDSRCVVS KG AVDMS DHKPEDE+ELTRI+ AGG V +DGRV G LNLSRAIGD  YK ++AL PEEQMI++ P+++ L + ++ EF+V+ACDG+WN +SSQE V FV ERL+  A  + P  LS +  +L D C A    GDGTG DN+T +++    P  G+  G +  +        K EES   + G+D K+ K
Sbjct:  167 MDGKEEPGSDSGTTAVVAL-IRGKQLIVANAGDSRCVVSEKGKAVDMSYDHKPEDELELTRIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKALPPEEQMISSLPDVKVLTLNEDHEFMVVACDGIWNVMSSQEVVDFVNERLKTEAGKNRP--LSAIIEELLDHCLAPDTSGDGTGCDNMTCIIISFS-PHLGSNIGESTKK-------RKPEESAAEENGNDSKKSK 386
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: R7UA35_CAPTE (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UA35_CAPTE)

HSP 1 Score: 196 bits (498), Expect = 8.270e-54
Identity = 107/183 (58.47%), Postives = 133/183 (72.68%), Query Frame = 1 
Query:  658 GFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAV-VDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVEL 1203
            G D G TAV+ALL G K L VANAGDSRCV+SR G A+DMS DHKPED +EL+RI KAGG V +DGRV G LNLSRAIGD  YK + ALT +EQMIT+ P+++ L +   DEF+VLACDG+WN +SSQ+ VS+VRER++          LS +C +L +AC A    GDGTG DN+T ++V L
Sbjct:   36 GADSGCTAVVALLHGLK-LYVANAGDSRCVLSRDGKAIDMSEDHKPEDPIELSRINKAGGCVTMDGRVNGGLNLSRAIGDHCYKQNTALTLQEQMITSLPDIKCLSLEPTDEFMVLACDGIWNVMSSQDVVSYVRERIQAGTQK-----LSAICEELFEACLAPDTSGDGTGCDNMTCIIVAL 212
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A8C2HRK2_CYPCA (Protein phosphatase, Mg2+/Mn2+ dependent, 1G n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2HRK2_CYPCA)

HSP 1 Score: 203 bits (516), Expect = 8.920e-54
Identity = 109/188 (57.98%), Postives = 138/188 (73.40%), Query Frame = 1 
Query:  637 LDTRRRCGFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAV-VDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLV 1197
            +D +   G D G TAV+AL + GK L+VANAGDSRCVVS KG AVDMS DHKPEDE+ELTRI+ AGG V +DGRV G LNLSRAIGD  YK ++AL PEEQMI+A P+++ L + ++ EF+V+ACDG+WN +SSQE V FV ERL+  A  + P  LS +  +L D C A    GDGTG DN+T +++
Sbjct:  250 MDGKEEPGSDSGTTAVVAL-IRGKQLIVANAGDSRCVVSEKGKAVDMSYDHKPEDELELTRIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKALPPEEQMISALPDVKVLTLNEDHEFMVIACDGIWNVMSSQEVVDFVNERLKTEAGKNRP--LSAIIEELLDHCLAPDTSGDGTGCDNMTCIII 434
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A7R9F3S1_9NEOP (Hypothetical protein n=1 Tax=Timema bartmani TaxID=61472 RepID=A0A7R9F3S1_9NEOP)

HSP 1 Score: 197 bits (500), Expect = 2.410e-53
Identity = 120/206 (58.25%), Postives = 140/206 (67.96%), Query Frame = 1 
Query:  595 LDVDEAEA-PAVESPLDTRRRCGFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAVV-DGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEIT-DEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVEL 1203
            L  DE  A P V + L        D G TAV+ALL   + L VANAGDSRCVV RKG A++MS DHKPED+VE+ RI KAGG V  DGRV G LNLSRA+GD  YK  E L  EEQMITA P++RTL I  DEDEF++LACDG+WNSLSSQE V FVR R++        L LS +CA+L D C A    GDGTG DN+TAV+V+ 
Sbjct:   67 LGFDETLATPEVVTVLKRIADSKDDSGCTAVVALLKD-QELYVANAGDSRCVVCRKGEAIEMSLDHKPEDDVEMERIVKAGGKVTGDGRVNGGLNLSRALGDHAYKQSENLPAEEQMITALPDVRTLMINPDEDEFMILACDGIWNSLSSQEVVDFVRPRIQEGH-----LKLSQICAELFDHCLAPNTLGDGTGCDNMTAVIVQF 266
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BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: A0A673L0V3_9TELE (Protein phosphatase 1G-like n=5 Tax=Cyprininae TaxID=2743694 RepID=A0A673L0V3_9TELE)

HSP 1 Score: 202 bits (514), Expect = 3.090e-53
Identity = 109/190 (57.37%), Postives = 138/190 (72.63%), Query Frame = 1 
Query:  637 LDTRRRCGFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAV-VDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVEL 1203
            +D +   G D G TAV+AL + GK L+VANAGDSRCVVS KG AVDMS DHKPEDE+ELTRI+ AGG V +DGRV G LNLSRAIGD  YK ++AL PEEQMI++ P+++ L + ++ EF+V+ACDG+WN +SSQE V FV ERL+  A  + P  LS +  +L D C A    GDGTG DN+T V++  
Sbjct:  273 MDGKEEPGSDSGTTAVVAL-IRGKQLIVANAGDSRCVVSEKGKAVDMSYDHKPEDELELTRIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKALPPEEQMISSLPDVKVLTLNEDHEFMVVACDGIWNVMSSQEVVDFVNERLKTEAGKNRP--LSAIIEELLDHCLAPDTSGDGTGCDNMTCVIISF 459
[Close]
BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Match: UPI001C40D8A1 (protein phosphatase 1G isoform X1 n=2 Tax=Solea senegalensis TaxID=28829 RepID=UPI001C40D8A1)

HSP 1 Score: 204 bits (518), Expect = 3.300e-53
Identity = 111/191 (58.12%), Postives = 137/191 (71.73%), Query Frame = 1 
Query:  637 LDTRRRCGFDCGATAVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEKAGGAV-VDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEITDEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLCDACCAETADGDGTGLDNVTAVLVELH 1206
            +D +   G D G TAV+AL + GK L+VANAGDSRCVVS  G AVDMS DHKPEDEVEL RI+ AGG V +DGRV G LNLSRAIGD  YK ++AL PEEQMI+A P+++ L + +E +F+VLACDG+WN LSSQE V F+ ERL+   S +   PLS +  +L D C A    GDGTG DN+T +L+ L 
Sbjct:  334 MDGKEEPGSDSGTTAVVAL-IRGKQLIVANAGDSRCVVSEHGKAVDMSYDHKPEDEVELARIKNAGGKVTMDGRVNGGLNLSRAIGDHFYKRNKALCPEEQMISAMPDVKVLTLNEEHDFMVLACDGIWNVLSSQEVVDFISERLKPDQSGNAK-PLSSIVEELVDHCLAPDTSGDGTGCDNMTCILITLQ 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20582.5876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BB25ABF2.000e-5657.14probable protein phosphatase 2C 21 n=1 Tax=Lytechi... [more]
A0A7M7NNI5_STRPU3.110e-5554.50PPM-type phosphatase domain-containing protein n=3... [more]
A0A7R9K321_TIMGE1.030e-5461.96Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
A0A553NGA5_9TELE1.040e-5458.56PPM-type phosphatase domain-containing protein (Fr... [more]
A0A671PLL9_9TELE1.290e-5451.52Protein phosphatase 1G-like n=7 Tax=Cyprininae Tax... [more]
R7UA35_CAPTE8.270e-5458.47PPM-type phosphatase domain-containing protein (Fr... [more]
A0A8C2HRK2_CYPCA8.920e-5457.98Protein phosphatase, Mg2+/Mn2+ dependent, 1G n=2 T... [more]
A0A7R9F3S1_9NEOP2.410e-5358.25Hypothetical protein n=1 Tax=Timema bartmani TaxID... [more]
A0A673L0V3_9TELE3.090e-5357.37Protein phosphatase 1G-like n=5 Tax=Cyprininae Tax... [more]
UPI001C40D8A13.300e-5358.12protein phosphatase 1G isoform X1 n=2 Tax=Solea se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20582contigH-elongata_contig20582:688..6886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score216.1
Seed ortholog evalue3.4e-53
Seed eggNOG ortholog7668.SPU_014625-tr
Preferred namePPM1G
KEGG koko:K17499
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0007049,GO:0007050,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022402,GO:0031974,GO:0031981,GO:0035970,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045786,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.Protein phosphatase, Mg2 Mn2 dependent, 1G
EggNOG OGs38CQG@33154,3B9BA@33208,3CY5N@33213,COG0631@1,KOG0699@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons7
Model size2390
Cds size1347
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.1690884-UTR-H-elongata_contig20582:687..7571622930152.1690884-UTR-H-elongata_contig20582:687..757Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20582 688..757 +
1691679301.0587413-UTR-H-elongata_contig20582:687..7571691679301.0587413-UTR-H-elongata_contig20582:687..757Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20582 688..757 +
1622930152.1915343-UTR-H-elongata_contig20582:1840..18481622930152.1915343-UTR-H-elongata_contig20582:1840..1848Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20582 1841..1848 +
1691679301.070029-UTR-H-elongata_contig20582:1840..18481691679301.070029-UTR-H-elongata_contig20582:1840..1848Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20582 1841..1848 +
1622930152.3100867-UTR-H-elongata_contig20582:5921..68861622930152.3100867-UTR-H-elongata_contig20582:5921..6886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20582 5922..6886 +
1691679301.1353683-UTR-H-elongata_contig20582:5921..68861691679301.1353683-UTR-H-elongata_contig20582:5921..6886Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20582 5922..6886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.2075508-CDS-H-elongata_contig20582:1848..19191622930152.2075508-CDS-H-elongata_contig20582:1848..1919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 1849..1919 +
1691679301.078961-CDS-H-elongata_contig20582:1848..19191691679301.078961-CDS-H-elongata_contig20582:1848..1919Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 1849..1919 +
1622930152.223389-CDS-H-elongata_contig20582:2928..34011622930152.223389-CDS-H-elongata_contig20582:2928..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 2929..3401 +
1691679301.0881114-CDS-H-elongata_contig20582:2928..34011691679301.0881114-CDS-H-elongata_contig20582:2928..3401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 2929..3401 +
1622930152.2412994-CDS-H-elongata_contig20582:3847..39651622930152.2412994-CDS-H-elongata_contig20582:3847..3965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 3848..3965 +
1691679301.0974023-CDS-H-elongata_contig20582:3847..39651691679301.0974023-CDS-H-elongata_contig20582:3847..3965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 3848..3965 +
1622930152.2706656-CDS-H-elongata_contig20582:4476..45971622930152.2706656-CDS-H-elongata_contig20582:4476..4597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 4477..4597 +
1691679301.10648-CDS-H-elongata_contig20582:4476..45971691679301.10648-CDS-H-elongata_contig20582:4476..4597Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 4477..4597 +
1622930152.2847867-CDS-H-elongata_contig20582:4945..51251622930152.2847867-CDS-H-elongata_contig20582:4945..5125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 4946..5125 +
1691679301.1153512-CDS-H-elongata_contig20582:4945..51251691679301.1153512-CDS-H-elongata_contig20582:4945..5125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 4946..5125 +
1622930152.295213-CDS-H-elongata_contig20582:5537..59211622930152.295213-CDS-H-elongata_contig20582:5537..5921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 5538..5921 +
1691679301.12785-CDS-H-elongata_contig20582:5537..59211691679301.12785-CDS-H-elongata_contig20582:5537..5921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20582 5538..5921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20582.5876.1prot_H-elongata_contig20582.5876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20582 1849..5921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20582.5876.1

>prot_H-elongata_contig20582.5876.1 ID=prot_H-elongata_contig20582.5876.1|Name=mRNA_H-elongata_contig20582.5876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=449bp
MGLLSKVNKGTQLQIMEHMKKAMSEKFCSQSVELGDSGSGAGEDDDDSDD
DDDSEGSVDSEEDKEEGTGIKEASASSKDKVGDGSLSSDGPTPDAESLPA
GGGLEVAKEKSESAEAPNGGMDETEAVQALPAPAPSVSAVASNGPAGGGG
VVARKRGAAGVGIEEWCNARLKLDVDEAEAPAVESPLDTRRRCGFDCGAT
AVMALLVGGKTLVVANAGDSRCVVSRKGVAVDMSTDHKPEDEVELTRIEK
AGGAVVDGRVQGNLNLSRAIGDLMYKVDEALTPEEQMITADPELRTLEIT
DEDEFIVLACDGVWNSLSSQETVSFVRERLRGSASSSPPLPLSGVCADLC
DACCAETADGDGTGLDNVTAVLVELHTPGAGALTGRAVARAGTANSDTKA
EESGDIDLGDDGKRKKGGGACGPKERSGKLMRPAVVAASAASGEKDGV*
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mRNA from alignment at H-elongata_contig20582:688..6886+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20582.5876.1 ID=mRNA_H-elongata_contig20582.5876.1|Name=mRNA_H-elongata_contig20582.5876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6199bp|location=Sequence derived from alignment at H-elongata_contig20582:688..6886+ (Himanthalia elongata Himel1 dioecious)
CAGGTCGAGCTCCTGAAATTAAGGGGAGAGACCTCCAAGGGTGAGGCGTA
CAGCGACAGCGAGGATGAAGGTGAGGCATGCTACCTGCACGCACGTCCAT
CTAGCGCATACCTTGGGGTTGTATTGAACTCGATTCGTACCTGTAGAGCC
TGGTCCTGTGGTCCAGGCCCCCGCTCGTGATCGGCAGCGAAGCGTCTACT
TGTATATGGAAGAAAACATCCCTAGTGGATGTTCGGAGGGTTGGAATAAG
TTCATAGGTTTTAAAATATAAATATGACTAGAGTCTAAAGCGTCCAATGC
TTCAGCGAAGAAATTAAAATGTAGATGCGACGGCAGCAGGATCGTGCGTT
TAGATACCCCGGGGGAACACGATTATCAACCACAAGTTAACACTTTTGGA
ACTGGATTTTTAAGTTTTATTATACATTTAGTATGTAAAAAACAGATTGA
GTTCCGTAAGGGTTAAATGTAGTAATGTGTACGTTCGAACCTGACGAAAG
TTGGTCGGTCCCCTGGACTGCACCTCTCACGGTGCGAAGAAGGCGTGGTT
GTTGTTTTTGTTGGTCTCACTTTTAGCAGAAGGATCAACCGGTTCTGGTT
GCCTTCTGCTCATGGTCAGCTGAACAGGGAAAAATAATTCTCCTCTGTCC
CTGTTTGCGCAGCGGAATTTGATCTCGCGTCAGCCCGTTCTCTCAACCCA
GGCTGAATCTGGTGCTTACTTTTCGCAGGGTTGGAATGAGTTCATATTTT
TTAAAAAAAAGAAAAATGCCTAGGCCTCCTGCTTATGTTTTGATAAGAAA
AACGCCATTTGCTCGAGGTTTTCCAGGGGTCTACTGCGGTGGAACGCTTC
CCGACTGGATCCTAGCTATACTGTATGCTGCATGCACCTTCGACACCACA
TCTACATAATATTTTTGATCTTGTTTCTTTGTTTTGGCGGTAAAATCCGA
TTAAAAATTTCCCATGAATGCCAATTCGATTAAAATATTCGCATATATTT
TGAACCATTTGCACCACTCCCCCCCTCGGGTCATGAAGCACTAAAATATG
CTACGGTACTTGGTATAAAAGAGTGTTGTCACGTGTCCGTTTCGTTTCGT
TTTTTTTCTTATTTTTTTCTACAATACTTTTTTTTGTGTGGGTCATCATC
AAGCTGGCGATATGGGCCTGCTCTCAAAGGTCAACAAAGGAACCCAATTG
CAGATCATGGAGCACATGAAAAAGGCGATGAGGTGAGGAAGACATCCTTC
CTTCCTTCTCCCTGTGTTCCCTTTTAGCGCTGCCTCCGTGTTGCGTTTGG
CTAAAAGTCACGCCCGTGCGACATCTTATGTAAAGAGCCAGAATAAGTAC
TTTTTTAGCAGTCTGTTGCGGTTAGCTTAGCACAACCACAAAATGTTCGA
CGAAAAATATTGCCTACTGTTAGCAGGGATTTTCAGGGGTTCCGATTGGG
AGTTGCAACTCAAGAGGCGTAATAGGTTAGAAGCGGCCAAGGCGATGAGT
ACGGTTGGTGATGGTGTGTGGCATCCGTCCCTCCCTTGCTTTTTATTTTT
ATTTTTTCGATATAACAGTAGAATGGTGGGAGTAGTAGCAACAACCCTTC
GAGCCAGGTTCGTAGAAAGCCCGTGTATTGTATGATGGGATATGTTGCTG
CCTAGGTGGTTGCTGTACGAAAACCGAAACAGCGGGGGGGGGGGGGGGGG
GGGGGATTCATTAAGCATCNNNNNNNNNNGCGGTACGAGTGGGGTGCTCT
GGGTAAAGCGCCGCGCCGGGGGGGGGGGGGGGGAGGGCAGGGGGCATTCA
TTAAGCATCCCCTGGACTCTGGCGATTCCCAGTATCACCAGCGGTAAACC
CTTACTGAGCTCGTAGCGTATAGCCGTGACCCCGTGACCCGTGTTTTGAT
GATGAAGCGGGCAGGGGACGACTCTTGTGACCCGTGCCTGGAGTACTGTA
CGGTACAGTACATTATAGTATAGCATAGTATAGTCGCGCCCGCTGAAAGT
GCAACATTTGGTTACCCGCAGTGTCCAGTTAAGCCCATGGCACGTTCGGT
TTCTCGTAGCAAACGCAAGAATAAGGATTATAATTTGGTGTCAATTGTTT
TTTAATACGAAGCCAGACGAGCAAAGCGCGGTTAATTGCCCCATGCGTTT
ATTGGGATGCGTAGTTTCGTTACGTTAAGATACTGTACAGGCATTTTAAC
ACAAGCACACCATACTCCCGACCTGCCGGCGAATTCTTCAGTGAAAAATT
CTGCAGTCAGAGCGTTGAGCTGGGCGATTCGGGCTCGGGTGCAGGTGAGG
ACGACGATGATTCAGACGACGATGACGACTCCGAGGGCAGTGTTGATTCT
GAGGAGGACAAGGAGGAGGGAACGGGCATCAAAGAAGCTTCGGCGTCGTC
GAAAGATAAGGTGGGCGACGGAAGCCTCAGCTCGGACGGACCGACGCCAG
ATGCGGAGAGTTTACCGGCGGGTGGCGGTTTGGAGGTGGCGAAGGAGAAA
AGTGAAAGTGCCGAGGCGCCGAACGGAGGCATGGATGAAACGGAAGCGGT
GCAAGCTCTCCCAGCACCGGCTCCCTCGGTTTCAGCTGTTGCATCCAATG
GTCCTGCCGGGGGTGGAGGAGTGGTGGCACGGAAGAGGGGTGCCGCGGGT
GTGGGGATCGAGGAGTGGTGCAACGCAAGGCTGAAGCTGGACGTCGATGA
AGCGGAAGCACCAGGTCAGTAGCTTTGAGTTTTTGGAAAAAGGAAGTCTG
GGGTAATGTAACGTGGGTTTTGGGGCGGCATGGGCACAACAAAGCGATCT
TACGCATGCCGTGCTAAGAACATTACCGACCCCAAAGAAAAAAAAATGTG
TTCAGAGGTGCGGGGAATGTGGTACGCTATCCATGATTTAGTTTTTGAAA
ACGTCTGGGGCAGATCCCAGCACCGCAAAGTCCTACCTCTTCTGCTTTTC
ACATGTTTTCCCATCGATACTTTGGGCGTATTTGGACGTGTGAGTGAGGT
AGCTAAGAGTGGGGCAGCTCTTCCCTCAAACAAGACGGCTGTGAATAACC
CCGTCCGACTCTAGTGGGTTTCAAGTTTTTGACGCTTTCATCGTTTAAAT
ATAACATCCCCTCACCGTTTGTTGTATCGAATCTACCGGTATCTGCCGAC
GCACACTCAGCCGTGGAGTCACCGTTGGACACACGACGGCGATGCGGTTT
TGACTGTGGCGCCACAGCCGTCATGGCACTGCTCGTCGGTGGCAAGACGC
TGGTCGTGGCCAACGCGGGGGATTCCAGGTGAAGAGAGTAATTTTCTCGA
CTTGCTTCTTTTCCAGGAGCTGTCCCGGCGCAGTTTTGAGGGCTTGCAAA
GGCCGGATAAAGACACCTCTATTGATTTTGCCTGCCCGACTCCCGTTTGG
CTGAGGCACACCTTTTTGGGTGTCAAATCGTGTCGAATCAAACTTACATG
TTTCGCGTCTGATCCCGGTTCAGTGCCGCTGGTGGTGACGTCATCAGCAG
AGCAAAGATGGAGAAGTACCCTGTGTCCCCCTACCACTTTATACTTTACA
CGAGGCAAAACATGTAAAAAACAAATATATATATATATTGGGCGCGTGTG
CAATGCAATAAGACGGATATTGGTGCTCGCTTTCTATTCGCCGTATCGTT
TATCTTAGGTGGTACCCGAGTGGGCTGGAGTATCGATATCCGTTTCTCTT
TTCTGGCGTTGATGCCGAGCTTGGACACATGCCTTTGCTTACCATAACTC
CCGCCAGTAAAATATTATGCTTGCTGTGGATCGGACTAGGTGCGTGGTAA
GTCGCAAGGGAGTCGCGGTGGACATGTCGACGGACCACAAGCCGGAAGAT
GAGGTGGAATTGACGAGGATTGAGAAGGCGGGAGGTGCCGTGGTAGACGG
CAGGGTTCAGGTAAAGGAGGAAGCGTTGGGAAGGGGGGAGCGAGGGTAAG
CCAGCGTCGAAACCTTATTTTTCTGCAGTCTACGCAGTCCCTAGACGCGC
ACATGTTTCGCGCCGTAAAAAGGTTGGATCTCGCCGCACGATGTCTTCGA
AAGCGCCTCGATATCCACAGTACCAGGGGGGCTCGTTTGCGCATGCGTGT
CGATATTTGGAGTGTACAACGGTAGACCACACCTTGTATGTCTCATGAAC
TATGATCAGTAAAGTTTAGATTGGGATATAGTCATTGTAACGGGCTAGCA
CTACTCGTACCGCCTAGCAAACACTTCACTCTTAAGATAGACGTCTCTCG
ATTGCCAGGGCAACCTGAACCTCTCAAGGGCAATAGGCGACCTCATGTAC
AAGGTCGACGAGGCACTAACCCCTGAGGAGCAGATGATTACGGCTGACCC
CGAGCTGCGGACCTTGGAGATCACCGACGAGGATGAGTTCATCGTGCTCG
CCTGCGATGGGGTGTGGAACTCCCTTAGCAGTCAGGAGGTAGGTTTTTGT
GCACTAGGATTCGGCAGGCGCGCGGGTTTGCAGAGTTTTAAGCCTTAATA
TTTTCAATCACCTTGGGGAAAAAAGTGGGTTTATTTTCATCGTGGAAGGG
TAAAAAGAGTGCCGTGGGCATGACTATCTCGAGAGGCGGAAATTGCAGGG
TTTGATGGTAAACTACAGAAGATAATCCACAAAACTGTTTAATATCCCCT
TGTCCGCGGGATAACGTTGGGGGGACGGGTGGCTAATAAATCGGGCACGT
GGTGTTTTGCCCTTTTACTTCACAATATTTATTATAATATTGTATCCTTT
GTATTAAACCCCGAACGATGTAAAACCTTCTCGACCGATCCCCTTGAAGA
AAACCCTTTTGCTTTGACCCTTTGCGACGTATAACCCCCTCGCGCAAAAG
ACGGTCAGTTTCGTTCGCGAAAGATTGCGGGGCTCTGCGTCAAGCTCTCC
CCCGCTTCCTCTGAGCGGCGTGTGTGCGGACCTGTGCGATGCCTGTTGCG
CCGAAACCGCGGATGGAGACGGCACTGGTCTCGACAACGTGACGGCCGTT
TTGGTGGAACTCCACACCCCAGGCGCGGGGGCTCTCACCGGGAGGGCGGT
GGCAAGAGCCGGAACAGCCAATTCGGACACAAAAGCAGAAGAGTCGGGCG
ACATAGACCTTGGGGACGATGGAAAGAGGAAGAAGGGAGGCGGTGCATGC
GGTCCGAAGGAGCGGTCCGGGAAACTCATGAGACCTGCAGTCGTGGCGGC
ATCGGCGGCATCTGGGGAGAAAGACGGTGTTTGAGGATGGATCACGACAC
AATGCTTCTCTATGTTTTATTTTTCTGACGCTGCTGTCCTTACTGTCCAC
GTACGCGCTCGTCTTGAAAGATACGATACGGCAGCGGCGAAAGTGGTAGT
GGCAGTTTTAGTTTTTTTTGTTTTTTTTAATCCAAAATGTAACCCGTGTT
TTCTGGCGCAAACTCACCGCCAAGGAATCTGATTAGTTGGCGTTATGTTG
ATGACCCTTGGTGAATTAAGTGAGATTAGATGTGCCCGGGAAGGGACGGA
GGAACCAAAAAAATCCCAAAATATGTTGCCCGGGGTTTGGATGAGAAGTT
ACGTTAGTGTAACCCGCCCGCTTGAACAGCATAGAGGGTATGTCCTTGGT
TGGAATGACACTCAAATGATGTGCGGTCGGATAGCGAGCGCACGGTGACA
ACCACTCACCCGCATTCGGTATTTTTCCTTATAAATTTAACACATACATG
TCGCCCCGATTCTTCGGCGGGCGTCACACCCTACCGCAGCCAGCCGCGAT
CAGAGCGAACGCGCGATATAATGACGTGGCGCCCTTTTGCCACCGATGCA
GCGGTCCGCAGACAACTTCGGCACCAAAATTACATCTAAAGAACAAATAA
CCAGCGCAGAGGGTCGGGTGGGGGAAATGCCATGCATAGCTAGCTATACA
ACCATCGGGGAAACATTCCAAATATTTACTTCCGTTTCTGAACTTAAATG
AGTCCGCGCTCCTTTTTAGTATCGCTGGCGAGGGGTCCTTCCCTCCCCTC
CCCTGATAGTCGCGGCCTCCTTGCCAAAATTTATGTAGGATGCGATTTTT
ATCGATACGCCGTCAGCCTGACGTTTTTTTTAAAATGAGATGGATGGCTG
AACGACCACAGTCATTGGCTGAACGACACATCTGTCGCCCCGGTGGTGTA
AGGGTCAAGCCGTCTTCCTTGATCCCCGGAAGTAGTGAGTTCGAATCCT
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Coding sequence (CDS) from alignment at H-elongata_contig20582:688..6886+

>mRNA_H-elongata_contig20582.5876.1 ID=mRNA_H-elongata_contig20582.5876.1|Name=mRNA_H-elongata_contig20582.5876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2694bp|location=Sequence derived from alignment at H-elongata_contig20582:688..6886+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCTGCTCTCAAAGGTCAACAAAGGAACCCAATTGCAGATCATGGA
GCACATGAAAAAGGCGATGAGATGGGCCTGCTCTCAAAGGTCAACAAAGG
AACCCAATTGCAGATCATGGAGCACATGAAAAAGGCGATGAGTGAAAAAT
TCTGCAGTCAGAGCGTTGAGCTGGGCGATTCGGGCTCGGGTGCAGGTGAG
GACGACGATGATTCAGACGACGATGACGACTCCGAGGGCAGTGTTGATTC
TGAGGAGGACAAGGAGGAGGGAACGGGCATCAAAGAAGCTTCGGCGTCGT
CGAAAGATAAGGTGGGCGACGGAAGCCTCAGCTCGGACGGACCGACGCCA
GATGCGGAGAGTTTACCGGCGGGTGGCGGTTTGGAGGTGGCGAAGGAGAA
AAGTGAAAGTGCCGAGGCGCCGAACGGAGGCATGGATGAAACGGAAGCGG
TGCAAGCTCTCCCAGCACCGGCTCCCTCGGTTTCAGCTGTTGCATCCAAT
GGTCCTGCCGGGGGTGGAGGAGTGGTGGCACGGAAGAGGGGTGCCGCGGG
TGTGGGGATCGAGGAGTGGTGCAACGCAAGGCTGAAGCTGGACGTCGATG
AAGCGGAAGCACCAGTGAAAAATTCTGCAGTCAGAGCGTTGAGCTGGGCG
ATTCGGGCTCGGGTGCAGGTGAGGACGACGATGATTCAGACGACGATGAC
GACTCCGAGGGCAGTGTTGATTCTGAGGAGGACAAGGAGGAGGGAACGGG
CATCAAAGAAGCTTCGGCGTCGTCGAAAGATAAGGTGGGCGACGGAAGCC
TCAGCTCGGACGGACCGACGCCAGATGCGGAGAGTTTACCGGCGGGTGGC
GGTTTGGAGGTGGCGAAGGAGAAAAGTGAAAGTGCCGAGGCGCCGAACGG
AGGCATGGATGAAACGGAAGCGGTGCAAGCTCTCCCAGCACCGGCTCCCT
CGGTTTCAGCTGTTGCATCCAATGGTCCTGCCGGGGGTGGAGGAGTGGTG
GCACGGAAGAGGGGTGCCGCGGGTGTGGGGATCGAGGAGTGGTGCAACGC
AAGGCTGAAGCTGGACGTCGATGAAGCGGAAGCACCAGCCGTGGAGTCAC
CGTTGGACACACGACGGCGATGCGGTTTTGACTGTGGCGCCACAGCCGTC
ATGGCACTGCTCGTCGGTGGCAAGACGCTGGTCGTGGCCAACGCGGGGGA
TTCCAGCCGTGGAGTCACCGTTGGACACACGACGGCGATGCGGTTTTGAC
TGTGGCGCCACAGCCGTCATGGCACTGCTCGTCGGTGGCAAGACGCTGGT
CGTGGCCAACGCGGGGGATTCCAGGTGCGTGGTAAGTCGCAAGGGAGTCG
CGGTGGACATGTCGACGGACCACAAGCCGGAAGATGAGGTGGAATTGACG
AGGATTGAGAAGGCGGGAGGTGCCGTGGTAGACGGCAGGGTTCAGGTGCG
TGGTAAGTCGCAAGGGAGTCGCGGTGGACATGTCGACGGACCACAAGCCG
GAAGATGAGGTGGAATTGACGAGGATTGAGAAGGCGGGAGGTGCCGTGGT
AGACGGCAGGGTTCAGGGCAACCTGAACCTCTCAAGGGCAATAGGCGACC
TCATGTACAAGGTCGACGAGGCACTAACCCCTGAGGAGCAGATGATTACG
GCTGACCCCGAGCTGCGGACCTTGGAGATCACCGACGAGGATGAGTTCAT
CGTGCTCGCCTGCGATGGGGTGTGGAACTCCCTTAGCAGTCAGGAGGGCA
ACCTGAACCTCTCAAGGGCAATAGGCGACCTCATGTACAAGGTCGACGAG
GCACTAACCCCTGAGGAGCAGATGATTACGGCTGACCCCGAGCTGCGGAC
CTTGGAGATCACCGACGAGGATGAGTTCATCGTGCTCGCCTGCGATGGGG
TGTGGAACTCCCTTAGCAGTCAGGAGACGGTCAGTTTCGTTCGCGAAAGA
TTGCGGGGCTCTGCGTCAAGCTCTCCCCCGCTTCCTCTGAGCGGCGTGTG
TGCGGACCTGTGCGATGCCTGTTGCGCCGAAACCGCGGATGGAGACGGCA
CTGGTCTCGACAACGTGACGGCCGTTTTGGTGGAACTCCACACCCCAGGC
GCGGGGGCTCTCACCGGGAGGGCGGTGGCAAGAGCCGGAACAGCCAATTC
GGACACAAAAGCAGAAGAGTCGGGCGACATAGACCTTGGGGACGATGGAA
AGAGGAAGAAGGGAGGCGGTGCATGCGGTCCGAAGGAGCGGTCCGGGAAA
CTCATGAGACCTGCAGTCGTGGCGGCATCGGCGGCATCTGGGGAGAAAGA
CGGTGTTTGAACGGTCAGTTTCGTTCGCGAAAGATTGCGGGGCTCTGCGT
CAAGCTCTCCCCCGCTTCCTCTGAGCGGCGTGTGTGCGGACCTGTGCGAT
GCCTGTTGCGCCGAAACCGCGGATGGAGACGGCACTGGTCTCGACAACGT
GACGGCCGTTTTGGTGGAACTCCACACCCCAGGCGCGGGGGCTCTCACCG
GGAGGGCGGTGGCAAGAGCCGGAACAGCCAATTCGGACACAAAAGCAGAA
GAGTCGGGCGACATAGACCTTGGGGACGATGGAAAGAGGAAGAAGGGAGG
CGGTGCATGCGGTCCGAAGGAGCGGTCCGGGAAACTCATGAGACCTGCAG
TCGTGGCGGCATCGGCGGCATCTGGGGAGAAAGACGGTGTTTGA
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