mRNA_H-elongata_contig205699.5873.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A8F0JZN2_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZN2_9PHAE) HSP 1 Score: 427 bits (1099), Expect = 1.550e-149 Identity = 220/232 (94.83%), Postives = 228/232 (98.28%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
MRYFPF+LEQLRIL+ I+NEKSLKQAA+KLYISQPAISLQIQKLE+KLD PLFEREQKQVCFTSTGELILDYAARILVLCEEANKS+LYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRY+YANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPK HKLGRLNSISKHD+YDLKFITLKTHSLSRKVMDRILNENKIESSRLRIE EL
Sbjct: 1 MRYFPFSLEQLRILQAIKNEKSLKQAAEKLYISQPAISLQIQKLESKLDSPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSLLYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYSYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKFHKLGRLNSISKHDLYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIELEL 232
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A8F0F772_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F772_9PHAE) HSP 1 Score: 291 bits (744), Expect = 1.340e-95 Identity = 140/232 (60.34%), Postives = 182/232 (78.45%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M+YFPF+LEQLRIL+ I+ EKS K AAKKLY+SQPA++LQ+Q LE KLD P+F+R +KQ+CFT TGEL+LDYA RILVLCEEA+ +I+YLKD+ R KLIIGSSNT GTYLLPKIIGLFCRRY+YAN+ LE++ST +W VA G+ID+GIVGG + + +S+QI +V DE+ LI+PK H I K D+Y+L FI L S+ R+ +D++L++N I+S RL+I EL
Sbjct: 1 MQYFPFSLEQLRILKSIKAEKSFKAAAKKLYLSQPAVTLQVQNLEKKLDFPIFDRSKKQICFTRTGELVLDYATRILVLCEEADNAIMYLKDVNRNKLIIGSSNTIGTYLLPKIIGLFCRRYSYANINLEVNSTYPIAWGVATGEIDLGIVGGRVTNQFSKSIQIIPFVEDELVLIMPKFHPFNTFKLIRKEDIYELNFIALNKQSIVRENIDKVLDQNNIDSKRLKISFEL 232
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A0R6LUS1_UNDPI (Probable RuBisCO transcriptional regulator n=29 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUS1_UNDPI) HSP 1 Score: 266 bits (680), Expect = 7.390e-86 Identity = 138/233 (59.23%), Postives = 179/233 (76.82%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGY-IPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M+YFPF+LEQLRI++ I+NE ++KQAAK+LY+SQPA+SLQIQKLE ++D P+ +R +KQ+ FT TGELILDYA RIL LCEEA+K+I+YLK +KR L IGS+ GTY+LPKII LFCRRY+Y +VKLEI STN SW++ NG++DIGIV IPKEL+ SL Y +EI LILPK HK + SI+ +Y+L FITLK + RK+MD +L + IES +L+I+ EL
Sbjct: 1 MKYFPFSLEQLRIIQAIKNEATIKQAAKRLYLSQPALSLQIQKLEYEIDSPILDRRKKQIYFTFTGELILDYADRILRLCEEADKAIVYLKKLKRISLTIGSNEIVGTYILPKIIDLFCRRYSYIHVKLEIDSTNCISWNIVNGKVDIGIVEEEEIPKELYSSLYSTPYFQEEIVLILPKSHKFKDVYSITSEKLYNLDFITLKPDFIGRKLMDNVLKKFNIESDKLKIKLEL 233
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A8F0F6V8_AKKLU (Probable RuBisCO transcriptional regulator n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6V8_AKKLU) HSP 1 Score: 262 bits (670), Expect = 2.410e-84 Identity = 132/233 (56.65%), Postives = 178/233 (76.39%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVG-GYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M+YFPFNLEQLRI++ I+ E ++KQAA KLY+SQPA+SLQIQKLE ++D P+ +R +KQ+ T TGEL+LDYA RIL LCEEA+K+I+YLK +KR L IG++ T GTY+LPKII LFC+RY Y +KLEI TN SW++ NG+ID+GIV IPKEL+ SL K Y +EI LILPK H+L + +I++ ++Y+L FI LK + + RK+MD IL + I+S +L+I+ EL
Sbjct: 1 MKYFPFNLEQLRIIQAIKTEATIKQAATKLYLSQPALSLQIQKLEYEIDSPILDRNKKQIYLTLTGELLLDYADRILSLCEEADKAIIYLKKLKRISLTIGTNETVGTYILPKIINLFCKRYPYTRIKLEIHCTNCISWNIVNGKIDLGIVEEDEIPKELYNSLSSKPYFQEEIVLILPKYHELKNVRNITRENLYNLNFIALKPYFIGRKLMDDILKKFNIDSEKLKIKLEL 233
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A8F0F7X1_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F7X1_9PHAE) HSP 1 Score: 261 bits (666), Expect = 9.730e-84 Identity = 131/233 (56.22%), Postives = 177/233 (75.97%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVG-GYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M+YFPF+LEQLRI++ ++NE ++KQAAKKLY+SQPA+SLQIQKLE ++D P+ +R +KQ+ T TGEL+LDYA RIL LCEEA+K+I+YLK +KR L IG++ T GTY+LPKII LFC RY Y +KLEI+ N SW++ NG+ID+GIV IPKEL+ SL + Y +E+ LILPK H+L + +IS+ +Y+L FITLK H + RK+MD L + I S +L+I+ EL
Sbjct: 1 MKYFPFSLEQLRIVQAVKNEATIKQAAKKLYLSQPALSLQIQKLEYEIDSPILDRNKKQIYLTLTGELLLDYADRILNLCEEADKAIIYLKKLKRVSLTIGTNETVGTYILPKIINLFCTRYPYTRIKLEINCANCISWNIVNGKIDLGIVEEDEIPKELYNSLSCRPYFQEEMVLILPKYHELKDVRNISREKLYNLNFITLKPHYVGRKLMDDTLQKFNINSDKLKIKLEL 233
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A7U3S1F0_9STRA (Probable RuBisCO transcriptional regulator n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3S1F0_9STRA) HSP 1 Score: 256 bits (654), Expect = 5.450e-82 Identity = 129/232 (55.60%), Postives = 177/232 (76.29%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M+ FPFNL+QLRIL++I +E S K+AAK LY+SQPAISLQI+K+E+KL LPLFER+++Q+ T G+L++ Y RIL LC+E+ +++ L +KR LIIG+S +TGTYLLPK+IGLF RY NVKL+++S++R SW VANGQIDI I+GG+IP EL +L++ YV DE+ LI PK H I K D+YDL FITL+T S+ RK+M+ +LN++ I++SRL+I EL
Sbjct: 1 MQNFPFNLDQLRILKIIVSEGSFKRAAKTLYVSQPAISLQIRKVESKLGLPLFERDKRQIRLTKAGKLLVQYGNRILNLCDESFRAVEDLHQLKRGTLIIGASKSTGTYLLPKLIGLFRHRYPKINVKLKVNSSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKEDLYDLNFITLETDSMLRKLMEDLLNQHGIDNSRLKIGMEL 232
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A8F0F9M1_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M1_9PHAE) HSP 1 Score: 246 bits (628), Expect = 5.140e-78 Identity = 127/233 (54.51%), Postives = 179/233 (76.82%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIV-GGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M+Y PF+LEQLR ++ I+NE ++KQAAKKLY+SQPA+SLQI+KLE+ + P+ +R+++++ FT TGELILDYA +IL LCEEA+K+ILY K++KR L IGS+ T G Y+LPKII LFC+RY+YA++KLEIS TN +W + NG+IDIGIV +PKEL+ SL + +EI LILPK +KL +I+K ++Y+L FITLK H RK+MD +L +I++ +L+I+ +L
Sbjct: 1 MKYLPFSLEQLRTIQTIKNEGTVKQAAKKLYLSQPALSLQIKKLESGIKSPILDRKKRKIYFTRTGELILDYADKILNLCEEADKAILYFKNLKRISLNIGSNYTIGKYILPKIINLFCKRYSYAHIKLEISDTNTIAWDIINGKIDIGIVIEEELPKELYSSLYGTPFFLEEIVLILPKSYKLKGSRNITKTNLYNLNFITLKPHLRRRKLMDDLLERYQIDTKQLKIKLQL 233
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: W0RYG2_PORPP (Probable RuBisCO transcriptional regulator n=2 Tax=Porphyridium TaxID=2791 RepID=W0RYG2_PORPP) HSP 1 Score: 243 bits (620), Expect = 8.320e-77 Identity = 121/232 (52.16%), Postives = 167/232 (71.98%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
M PF ++QLRIL+ I E S K+AA LYISQPA+SLQ+Q LE +L++PLF+R K+ C T G+L+L RIL +CEE +++ L++++ LI+G+S TTGTYL+P++IGLF ++Y V+L++ ST R +WSVANGQID+ ++GG IP EL Q LQI Y DE+ LILPK H + +I K D+Y L+FITL THS RKV+D+ILN++ I+SSRL +E EL
Sbjct: 1 MTDLPFTIDQLRILKAIATEGSFKRAADSLYISQPAVSLQVQNLEKQLNIPLFDRGGKKACLTEAGDLLLRNGTRILAMCEETCRALEDLQNLQGGSLIVGASQTTGTYLMPRLIGLFRQQYPQVIVQLQVHSTRRIAWSVANGQIDLAVIGGEIPSELKQILQITSYAEDELALILPKSHPFSKYQNIKKEDLYRLRFITLDTHSTIRKVIDKILNQHGIDSSRLTVEMEL 232
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A4D6WWI9_9FLOR (Probable RuBisCO transcriptional regulator n=1 Tax=Pleonosporium borreri TaxID=2575635 RepID=A0A4D6WWI9_9FLOR) HSP 1 Score: 243 bits (619), Expect = 1.180e-76 Identity = 121/232 (52.16%), Postives = 164/232 (70.69%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
MR PF L+QLRIL+ I E S K+AA LY+SQPAISLQIQ LE +L+LPLFER K+ T G L+L Y RIL LCEE +++ +++++ LIIG+S TTGTYL+P+++GLF +RY NV+L++ ST SWSVANGQID+ ++GG +P+EL LQ+ Y DE+ LILP H ++N I K D+Y L+FI L S RKV+D++LN++ I+SSR +IE EL
Sbjct: 1 MRDVPFTLDQLRILKAIIKEGSFKRAANSLYVSQPAISLQIQNLEKQLNLPLFERNNKKATLTEAGNLLLQYGNRILALCEETCRALEDIQNLQGGSLIIGASQTTGTYLMPRLLGLFRQRYPQVNVQLQVHSTRLISWSVANGQIDLAVIGGEVPQELKDILQVTSYAEDELALILPVSHNFSKINDIQKEDLYHLRFIALDKQSTIRKVIDKVLNQHDIDSSRFKIEMEL 232
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Match: A0A1Z1MRA0_9FLOR (Probable RuBisCO transcriptional regulator n=2 Tax=Laurencieae TaxID=2008388 RepID=A0A1Z1MRA0_9FLOR) HSP 1 Score: 242 bits (617), Expect = 2.290e-76 Identity = 123/232 (53.02%), Postives = 164/232 (70.69%), Query Frame = 1
Query: 1 MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLPLFEREQKQVCFTSTGELILDYAARILVLCEEANKSILYLKDIKRTKLIIGSSNTTGTYLLPKIIGLFCRRYAYANVKLEISSTNRTSWSVANGQIDIGIVGGYIPKELHQSLQIKKYVNDEIGLILPKLHKLGRLNSISKHDVYDLKFITLKTHSLSRKVMDRILNENKIESSRLRIEPEL 696
MR PF L+QLRIL+ I E S K+AA LY+SQPAISLQIQ LE +L++P+FER K+ T G L+L Y RIL LCEE +++ +++++ LIIG+S TTGTYL+P++IGLF +RY NV+L++ ST SWSVANGQ+D+ I+GG +P EL LQI Y DE+ LILP H ++N+I K D+Y L+FI L T S RKV+D+ILN++ I+SSR IE EL
Sbjct: 1 MRDLPFTLDQLRILKAIIKEGSFKKAADSLYVSQPAISLQIQNLERQLNIPIFERSSKKATLTEAGNLLLRYGGRILALCEETCRALEDIQNLQGGSLIIGASQTTGTYLMPRLIGLFRQRYPQVNVQLQVHSTRLISWSVANGQVDLAIIGGEVPNELKDILQITSYAEDELALILPISHAFSKVNNIQKEDLYRLRFIALDTQSTIRKVIDKILNQHGIDSSRFTIEMEL 232 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205699.5873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig205699.5873.1 >prot_H-elongata_contig205699.5873.1 ID=prot_H-elongata_contig205699.5873.1|Name=mRNA_H-elongata_contig205699.5873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=232bp MRYFPFNLEQLRILRVIENEKSLKQAAKKLYISQPAISLQIQKLEAKLDLback to top mRNA from alignment at H-elongata_contig205699:3..698- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig205699.5873.1 ID=mRNA_H-elongata_contig205699.5873.1|Name=mRNA_H-elongata_contig205699.5873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=696bp|location=Sequence derived from alignment at H-elongata_contig205699:3..698- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig205699:3..698- >mRNA_H-elongata_contig205699.5873.1 ID=mRNA_H-elongata_contig205699.5873.1|Name=mRNA_H-elongata_contig205699.5873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1392bp|location=Sequence derived from alignment at H-elongata_contig205699:3..698- (Himanthalia elongata Himel1 dioecious)back to top |