mRNA_H-elongata_contig20568.5872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20568.5872.1
Unique NamemRNA_H-elongata_contig20568.5872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: D7G7T5_ECTSI (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T5_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.490e-55
Identity = 88/94 (93.62%), Postives = 89/94 (94.68%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQELAGKMDP--QVAPMAM 276
            RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDP LE+EAKKAYQQELA KMDP   VAPMAM
Sbjct:   19 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPVLEQEAKKAYQQELADKMDPGTNVAPMAM 112          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A7S2BBH9_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BBH9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.280e-42
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQEL 237
            RHVILPK+LAK LPK+R+L+EQEWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GK+DP LEREAK AYQ  L
Sbjct:   37 RHVILPKELAKNLPKARLLSEQEWRGIGVQQSRGWAHYAIHRPEPHILLFRRPLGTDPVTGKIDPALEREAKDAYQNNL 115          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A6S9ANL1_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ANL1_9STRA)

HSP 1 Score: 140 bits (352), Expect = 2.500e-41
Identity = 63/79 (79.75%), Postives = 73/79 (92.41%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQEL 237
            RHVILPKDLAK LPK+R+L+E EWRG+GVQQSRGWMHYAIHRPEPHILLF+RPLGTDP SG+VDPELEREA++ Y+ + 
Sbjct:   21 RHVILPKDLAKTLPKNRLLSESEWRGIGVQQSRGWMHYAIHRPEPHILLFRRPLGTDPQSGQVDPELEREAREEYKNQF 99          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A7S3MEH0_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MEH0_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.550e-41
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQELA 240
            RHVILPKD A+ LPK+R LTE EWR +GVQQSRGW HYA H+PEPHILLF+RPLGTDPVSG+VDPELEREA++ YQQELA
Sbjct:   20 RHVILPKDSARNLPKNRTLTELEWRNIGVQQSRGWEHYACHKPEPHILLFRRPLGTDPVSGEVDPELEREAREKYQQELA 99          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A7S2BWV6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWV6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 4.320e-41
Identity = 65/80 (81.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQELA 240
            RHVILPK+LAK LPK+R+L EQEWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKVD ELER+AK AY   LA
Sbjct:   38 RHVILPKELAKNLPKARLLGEQEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVDVELERDAKDAYNASLA 117          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: W7T145_9STRA (Cyclin-dependent kinases regulatory subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T145_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.140e-40
Identity = 61/81 (75.31%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQELAG 243
            RHVILPK++A+ LPK R+LTE EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDPV+GKV+ ELEREAK+ Y + + G
Sbjct:   19 RHVILPKEIARSLPKQRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPVTGKVNAELEREAKEKYAESMNG 99          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A7S2VEK7_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VEK7_9STRA)

HSP 1 Score: 136 bits (343), Expect = 9.550e-40
Identity = 62/79 (78.48%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQEL 237
            RHVILPK+LAK LPKSR+LTE EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDP SG+VDPELER A+  Y+ + 
Sbjct:   37 RHVILPKELAKTLPKSRLLTESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPELERAARDEYKNQF 115          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A1E7F3Q6_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3Q6_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.830e-39
Identity = 60/75 (80.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAY 225
            RHVILPK+LAK LPKSR+L+E EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDP SG+VDPE+ER+A++ Y
Sbjct:   22 RHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWGHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKAREEY 96          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A7S0UH58_9STRA (Cyclin-dependent kinases regulatory subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0UH58_9STRA)

HSP 1 Score: 135 bits (339), Expect = 5.590e-39
Identity = 61/82 (74.39%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQELAGK 246
            RHVILPK+LAK LPKSR+L+E EWRG+GVQQSRGW HYAIHRPEPHILLF+RPLGTDP SG+VDPE+ER+A+  Y+ +   K
Sbjct:   51 RHVILPKELAKTLPKSRLLSESEWRGIGVQQSRGWQHYAIHRPEPHILLFRRPLGTDPQSGRVDPEMERKARDEYRSQYQRK 132          
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Match: A0A6H5L2I6_9PHAE (Cyclin-dependent kinases regulatory subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2I6_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 6.460e-39
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 1
Query:    1 RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLFKRPLGTDPVSGKVDPELEREAKKAYQQELA 240
            RHVILPK+ AK LP+SR+LTE EWR LGVQQSRGW HYA+H PEPHILLF+RPLGT+PV+G+VDPELEREAK+ Y +EL+
Sbjct:   18 RHVILPKETAKILPQSRLLTEDEWRHLGVQQSRGWQHYAVHTPEPHILLFRRPLGTNPVTGRVDPELEREAKEKYAEELS 97          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20568.5872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7T5_ECTSI1.490e-5593.62Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S2BBH9_9STRA2.280e-4282.28Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A6S9ANL1_9STRA2.500e-4179.75Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S3MEH0_9STRA3.550e-4180.00Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S2BWV6_9STRA4.320e-4181.25Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
W7T145_9STRA4.140e-4075.31Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]
A0A7S2VEK7_9STRA9.550e-4078.48Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A1E7F3Q6_9STRA4.830e-3980.00Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A7S0UH58_9STRA5.590e-3974.39Cyclin-dependent kinases regulatory subunit n=1 Ta... [more]
A0A6H5L2I6_9PHAE6.460e-3976.25Cyclin-dependent kinases regulatory subunit n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20568contigH-elongata_contig20568:3780..4710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue4.3e-43
Seed eggNOG ortholog2880.D7G7T5
KEGG koko:K02219
KEGG Pathwayko04111,ko05200,ko05222,map04111,map05200,map05222
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activator activity
EggNOG OGsKOG3484@1,KOG3484@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCyclin-dependent kinase, regulatory subunit
Ec32 orthologEc-06_000360.1
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.9072816-CDS-H-elongata_contig20568:3779..39331622930151.9072816-CDS-H-elongata_contig20568:3779..3933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20568 3780..3933 -
1691679300.9584277-CDS-H-elongata_contig20568:3779..39331691679300.9584277-CDS-H-elongata_contig20568:3779..3933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20568 3780..3933 -
1622930151.923794-CDS-H-elongata_contig20568:4585..47101622930151.923794-CDS-H-elongata_contig20568:4585..4710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20568 4586..4710 -
1691679300.9687352-CDS-H-elongata_contig20568:4585..47101691679300.9687352-CDS-H-elongata_contig20568:4585..4710Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20568 4586..4710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20568.5872.1prot_H-elongata_contig20568.5872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20568 3780..4710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20568.5872.1

>prot_H-elongata_contig20568.5872.1 ID=prot_H-elongata_contig20568.5872.1|Name=mRNA_H-elongata_contig20568.5872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
RHVILPKDLAKGLPKSRVLTEQEWRGLGVQQSRGWMHYAIHRPEPHILLF
KRPLGTDPVSGKVDPELEREAKKAYQQELAGKMDPQVAPMAM*
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mRNA from alignment at H-elongata_contig20568:3780..4710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20568.5872.1 ID=mRNA_H-elongata_contig20568.5872.1|Name=mRNA_H-elongata_contig20568.5872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=931bp|location=Sequence derived from alignment at H-elongata_contig20568:3780..4710- (Himanthalia elongata Himel1 dioecious)
AGACACGTTATCCTGCCCAAGGATCTTGCTAAGGGTCTGCCGAAGAGTCG CGTCCTGACCGAGCAAGAATGGCGAGGGCTTGGAGTTCAGCAGAGCCGCG GGTGGATGCACTACGCGATTCATAGGTGAAGTAATATGTTGGAAAGTTTA GAAAGCGGTTCCACCGTACCTGCTACGTTGAGTCACTTTGGCAAATCTAC CCCAGGCTTCTGACGTCCCCACGTGCGCACACTGTTGCCGAAGGTTTCTG ATCCGTACTTGCCGAATAGGATCTTGAGGTGGTAAAGTCAATACGTAACC AGCAGGGAAGTTTTTCTCTGGGCTCCGAGCTCCCTGGCCGGCCTTCGCGA TATACCATCGTCCCAAATGTAGGACATCGTAGGTGTACCATGCAGGGATA TCGCCCGGACGCGCTAGTCTTTCGGTCGTCTTTCATGCCGCTACATGCGG GATGTGCTGATTTTAGGGCACGTGAATGAGCCTCCTCTAGGCTTCCTTTG AACAAAATTCTAGTGCATGAGTGCGCTGTCCGAGTGAGACATTTGACACA CAGTTGGCCACCTGACGACTCCCGAGGTTAGTGGTACGTATGATACGCAG CAACGCGGTTGACATTCTGATAATGATTCCACGCGTTACACTCAAGTATT TCGTCGTTCGTCGACGAGCTACGCTCTTTTCAGCCATGCGCTTTGAAGAG ACTGCCGCATGTGTTTCTACTTGGGGAGACGTCATCCACCAATCTATCGA CCATTCCACGTTTCTTTTCGTATACAGGCCAGAACCACACATCCTACTCT TCAAGCGGCCCTTGGGAACCGACCCCGTCTCTGGCAAAGTGGACCCTGAG CTCGAGCGCGAAGCCAAAAAAGCCTACCAGCAGGAGCTTGCTGGGAAAAT GGATCCTCAGGTTGCTCCAATGGCCATGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20568:3780..4710-

>mRNA_H-elongata_contig20568.5872.1 ID=mRNA_H-elongata_contig20568.5872.1|Name=mRNA_H-elongata_contig20568.5872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig20568:3780..4710- (Himanthalia elongata Himel1 dioecious)
AGACACGTTATCCTGCCCAAGGATCTTGCTAAGGGTCTGCCGAAGAGTCG
CGTCCTGACCGAGCAAGAATGGCGAGGGCTTGGAGTTCAGCAGAGCCGCG
GGTGGATGCACTACGCGATTCATAGAGACACGTTATCCTGCCCAAGGATC
TTGCTAAGGGTCTGCCGAAGAGTCGCGTCCTGACCGAGCAAGAATGGCGA
GGGCTTGGAGTTCAGCAGAGCCGCGGGTGGATGCACTACGCGATTCATAG
GCCAGAACCACACATCCTACTCTTCAAGCGGCCCTTGGGAACCGACCCCG
TCTCTGGCAAAGTGGACCCTGAGCTCGAGCGCGAAGCCAAAAAAGCCTAC
CAGCAGGAGCTTGCTGGGAAAATGGATCCTCAGGTTGCTCCAATGGCCAT
GTGAGCCAGAACCACACATCCTACTCTTCAAGCGGCCCTTGGGAACCGAC
CCCGTCTCTGGCAAAGTGGACCCTGAGCTCGAGCGCGAAGCCAAAAAAGC
CTACCAGCAGGAGCTTGCTGGGAAAATGGATCCTCAGGTTGCTCCAATGG
CCATGTGA
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