mRNA_H-elongata_contig20568.5871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig20568.5871.1
Unique Name	mRNA_H-elongata_contig20568.5871.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig20568.5871.1 vs. uniprot
Match: D7G7T3_ECTSI (GDSL-lilke lipase/acylhydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T3_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.210e-88
Identity = 138/193 (71.50%), Postives = 163/193 (84.46%), Query Frame = 1

Query:    1 VLSIGGNDARIRFLHSRDPDVITELMVTDGLVANLRRLIEIIKADITPNIIIVYVYMPQFKMFPLLSLLPPASILQRLLVNFSKFFIEIANDHCLPVVDLSRTFDPNDRSHYGSTPIEPSNLSGQFIADLI--VKAKFRFGEETSGRVFSGTASEIKVKDLAPGAG--FSYTREFQAFLDSKKP-KNSSACVI 564
            VLSIGGNDARIRFL SR+PDV+TELM+TDG VANLRR++E I+A+ITPNII+VYVYMP+FK FPLLS+LPPA ILQRLLVNFSKFFIE+A +  LP++DLSRTFDPN++ HYGSTPIEPSN+SGQFIADL+  V A+FRFGEE  G++FSGT  E+ V DLAP A   FSY RE QAF D K   K +++CVI
Sbjct:  106 VLSIGGNDARIRFLQSRNPDVVTELMITDGFVANLRRVVETIRAEITPNIILVYVYMPEFKTFPLLSMLPPARILQRLLVNFSKFFIELAVEFHLPIIDLSRTFDPNNKKHYGSTPIEPSNVSGQFIADLVAQVLARFRFGEEAGGKIFSGTGGELVVHDLAPDAAARFSYGRELQAFFDRKAAEKPATSCVI 298

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BLAST of mRNA_H-elongata_contig20568.5871.1 vs. uniprot
Match: X6N473_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N473_RETFI)

HSP 1 Score: 68.9 bits (167), Expect = 2.040e-10
Identity = 43/132 (32.58%), Postives = 75/132 (56.82%), Query Frame = 1

Query:    1 VLSIGGNDARIRFLHSRDPDVITELMVTD-GLVANLRRLIEIIKADITPNIIIVYVYMPQFKMFPLLSLLPPASILQRLLVNFSKFFIEIANDHCLPVVDLSRTFDPNDRSHYGSTPIEPSNLSGQFIADLI 393
            +LSIG ND R    +++ PD++ E++        N+ +++++I  D+  N+I+V  Y P    F  +       +L  +     +  + +A+ + LP++DLSRT +P +R+HY  TP +PSN S + IADLI
Sbjct:   72 ILSIGANDVRKNLKYTK-PDLVIEMLQKKVQFEENMEQIVKMIVNDLRFNLILVLAYEPHEDCFKEMLHFGREELLDVMEWTAVRM-LGLASRNGLPLMDLSRTLNPFERTHYSKTPFKPSNQSAEMIADLI 201

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig20568.5871.1 vs. uniprot

BLAST of mRNA_H-elongata_contig20568.5871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G7T3_ECTSI	1.210e-88	71.50	GDSL-lilke lipase/acylhydrolase family protein n=2...	[more]
X6N473_RETFI	2.040e-10	32.58	Uncharacterized protein n=1 Tax=Reticulomyxa filos...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig20568	contig	H-elongata_contig20568:264..2044 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	271.9
Seed ortholog evalue	2.2e-70
Seed eggNOG ortholog	2880.D7G7T3
EggNOG OGs	2CBI1@1,2SQ5S@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	other localisation
Exons	4
Model size	570
Cds size	570
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig20568.5871.1	prot_H-elongata_contig20568.5871.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig20568 264..2044 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930151.8303957-CDS-H-elongata_contig20568:263..427	1622930151.8303957-CDS-H-elongata_contig20568:263..427	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 264..427 +
1691679300.926132-CDS-H-elongata_contig20568:263..427	1691679300.926132-CDS-H-elongata_contig20568:263..427	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 264..427 +
1622930151.845618-CDS-H-elongata_contig20568:753..853	1622930151.845618-CDS-H-elongata_contig20568:753..853	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 754..853 +
1691679300.9345415-CDS-H-elongata_contig20568:753..853	1691679300.9345415-CDS-H-elongata_contig20568:753..853	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 754..853 +
1622930151.8613622-CDS-H-elongata_contig20568:1211..1350	1622930151.8613622-CDS-H-elongata_contig20568:1211..1350	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 1212..1350 +
1691679300.9422948-CDS-H-elongata_contig20568:1211..1350	1691679300.9422948-CDS-H-elongata_contig20568:1211..1350	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 1212..1350 +
1622930151.8720288-CDS-H-elongata_contig20568:1877..2044	1622930151.8720288-CDS-H-elongata_contig20568:1877..2044	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 1878..2044 +
1691679300.9498498-CDS-H-elongata_contig20568:1877..2044	1691679300.9498498-CDS-H-elongata_contig20568:1877..2044	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20568 1878..2044 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig20568:264..2044+
coding sequence from alignment at H-elongata_contig20568:264..2044+

protein sequence of mRNA_H-elongata_contig20568.5871.1

>prot_H-elongata_contig20568.5871.1 ID=prot_H-elongata_contig20568.5871.1|Name=mRNA_H-elongata_contig20568.5871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp
VLSIGGNDARIRFLHSRDPDVITELMVTDGLVANLRRLIEIIKADITPNI
IIVYVYMPQFKMFPLLSLLPPASILQRLLVNFSKFFIEIANDHCLPVVDL
SRTFDPNDRSHYGSTPIEPSNLSGQFIADLIVKAKFRFGEETSGRVFSGT
ASEIKVKDLAPGAGFSYTREFQAFLDSKKPKNSSACVIC*

mRNA from alignment at H-elongata_contig20568:264..2044+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig20568.5871.1 ID=mRNA_H-elongata_contig20568.5871.1|Name=mRNA_H-elongata_contig20568.5871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1781bp|location=Sequence derived from alignment at H-elongata_contig20568:264..2044+ (Himanthalia elongata Himel1 dioecious)
GTCCTAAGTATCGGAGGCAACGACGCCCGAATCCGGTTCCTACATTCCCG
TGACCCGGATGTCATAACGGAACTCATGGTGACAGATGGTCTCGTTGCTA
ACCTCCGACGTCTGATCGAGATAATCAAAGCGGATATTACTCCCAATATC
ATCATAGTCTACGTGTGAGTCCGCCGCCGCCCAATATCATCATAGTCTCG
AAGAGCCAAGCAAGGTAATGAAGTGGTCCTTGCATACAGGTTGATGATTC
GAAGATTCCGGAGACTTTTCGTTTATCATGAAACGGACCTATTTGCTTAT
AGAGTCGCCGTAGACGTGCAGAAGAGGTCACGTTGTATTAATAGCACGCT
TGCCACGGAAAACCCCCAAACTACAAGCTATCGCGGAAGCCTCTAAGTAA
ATCAATATCATGGACGAAATTGTTGCCTTGTCTACGTACAGGTTGTGCGC
TGATCGATTTTGTCTCTTCCTTTCCTCTTCGTCCCGGAAGGTACATGCCT
CAGTTCAAGATGTTCCCCTTGCTAAGCCTGCTCCCACCGGCGAGCATCCT
ACAGCGGCTCCTGGTAAACTTTTCCAAGTTTTTCATTGAGGTACAGTTAC
CGTTCACGGTGTCAACGCCGTGCTCGGGCCGTCTTCGTGCCTCTACTTTT
ACTATTATAGTATAGTGGAGGACGGACAAACTTTAACTTGAAGTTTTATG
TATTTCTCGTGTTCGCCAATAGACTGGGTAGCTTCTGCATTTCCCGCATT
TTGGCTATGAATGCACTTGAACACAGGGCGCGTTGCGCCCCCCCCCCCCC
TCCCAACTTAGCTTGACAATACCCAGGAGTTGTGTGGCACCACAGCGACA
ACCCCAGGGATTCTGACGGATTCTGACGCTGAGTGCGTTACCCTCTTCTC
CCGCCAAACTCCCGGCACCACGACGTGCGTTTTTTTCCTGCCCGCCAGAT
CGCCAATGATCACTGTCTTCCTGTAGTCGACCTGTCGAGGACCTTCGACC
CCAACGACAGGAGTCACTACGGCTCGACACCGATCGAACCGTCGAACTTA
TCCGGACAATTCATCGCGGACCTCATCGTCAAAGCAAGTTCGCCGCGCTG
CGTTATCGAATACCGCGGTCACAGGTTTAGCGAATTTTTCCGGATCCATT
CTGCACGACGAGCAAATGCCACATCGTATTGTGTTCGCGTATAGTGCAGC
GCAACAGCACCCAGTCGGGGTCACGTAGGATTTCTGTACCTTTTGCGGTG
CTTGCGTTATTATTTTTTATATCGAGAATGATTCAGCCCTTCCTTTCCCT
CGTCGACCGTAACGTCGAATGTGTACCCACCAAATAATTGTTCTCCACTT
GTTGAGCACCATCACGTGAAAAAAATCCCCAGTTCGTGTGACTGCGCCGA
GGTTCGAACTCACGTCCCAACATCAGAAGATTTGAACCACCGGTATAAGA
TGTCTCTATAAAGATTGTTTATTGTGATTCCAAGGGTGAACGCCTCCATC
CGGACGATGGAACGCCTTGCTGCTACAATGCATCTCGGTATGCTGTACCT
TCCTGACAGTACACTCGGGTAACAAAATACACCGCTGCTGACTTTGTATG
ACAGGTACTGGAAGAGTTCCGTTTCGGCGAAGAGACCTCAGGGAGAGTTT
TCTCTGGGACGGCGAGCGAAATCAAGGTCAAAGACCTCGCCCCCGGTGCA
GGTTTCTCGTACACTCGGGAGTTCCAAGCATTCCTCGACAGCAAGAAGCC
CAAGAATTCATCCGCGTGCGTGATTTGCTAA

Coding sequence (CDS) from alignment at H-elongata_contig20568:264..2044+

>mRNA_H-elongata_contig20568.5871.1 ID=mRNA_H-elongata_contig20568.5871.1|Name=mRNA_H-elongata_contig20568.5871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig20568:264..2044+ (Himanthalia elongata Himel1 dioecious)
GTCCTAAGTATCGGAGGCAACGACGCCCGAATCCGGTTCCTACATTCCCG
TGACCCGGATGTCATAACGGAACTCATGGTGACAGATGGTCTCGTTGCTA
ACCTCCGACGTCTGATCGAGATAATCAAAGCGGATATTACTCCCAATATC
ATCATAGTCTACGTGTCCTAAGTATCGGAGGCAACGACGCCCGAATCCGG
TTCCTACATTCCCGTGACCCGGATGTCATAACGGAACTCATGGTGACAGA
TGGTCTCGTTGCTAACCTCCGACGTCTGATCGAGATAATCAAAGCGGATA
TTACTCCCAATATCATCATAGTCTACGTGTACATGCCTCAGTTCAAGATG
TTCCCCTTGCTAAGCCTGCTCCCACCGGCGAGCATCCTACAGCGGCTCCT
GGTAAACTTTTCCAAGTTTTTCATTGAGGTACATGCCTCAGTTCAAGATG
TTCCCCTTGCTAAGCCTGCTCCCACCGGCGAGCATCCTACAGCGGCTCCT
GGTAAACTTTTCCAAGTTTTTCATTGAGATCGCCAATGATCACTGTCTTC
CTGTAGTCGACCTGTCGAGGACCTTCGACCCCAACGACAGGAGTCACTAC
GGCTCGACACCGATCGAACCGTCGAACTTATCCGGACAATTCATCGCGGA
CCTCATCGTCAAAGCAAATCGCCAATGATCACTGTCTTCCTGTAGTCGAC
CTGTCGAGGACCTTCGACCCCAACGACAGGAGTCACTACGGCTCGACACC
GATCGAACCGTCGAACTTATCCGGACAATTCATCGCGGACCTCATCGTCA
AAGCAAAGTTCCGTTTCGGCGAAGAGACCTCAGGGAGAGTTTTCTCTGGG
ACGGCGAGCGAAATCAAGGTCAAAGACCTCGCCCCCGGTGCAGGTTTCTC
GTACACTCGGGAGTTCCAAGCATTCCTCGACAGCAAGAAGCCCAAGAATT
CATCCGCGTGCGTGATTTGCTAAAGTTCCGTTTCGGCGAAGAGACCTCAG
GGAGAGTTTTCTCTGGGACGGCGAGCGAAATCAAGGTCAAAGACCTCGCC
CCCGGTGCAGGTTTCTCGTACACTCGGGAGTTCCAAGCATTCCTCGACAG
CAAGAAGCCCAAGAATTCATCCGCGTGCGTGATTTGCTAA