mRNA_H-elongata_contig20567.5870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20567.5870.1
Unique NamemRNA_H-elongata_contig20567.5870.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20567.5870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20567contigH-elongata_contig20567:100..624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size525
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20567.5870.1prot_H-elongata_contig20567.5870.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20567 170..487 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.7700922-UTR-H-elongata_contig20567:99..1691622930151.7700922-UTR-H-elongata_contig20567:99..169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20567 100..169 +
1691679300.8973691-UTR-H-elongata_contig20567:99..1691691679300.8973691-UTR-H-elongata_contig20567:99..169Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20567 100..169 +
1622930151.7947257-UTR-H-elongata_contig20567:487..6241622930151.7947257-UTR-H-elongata_contig20567:487..624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20567 488..624 +
1691679300.9126284-UTR-H-elongata_contig20567:487..6241691679300.9126284-UTR-H-elongata_contig20567:487..624Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20567 488..624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.7828355-CDS-H-elongata_contig20567:169..4871622930151.7828355-CDS-H-elongata_contig20567:169..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20567 170..487 +
1691679300.9048645-CDS-H-elongata_contig20567:169..4871691679300.9048645-CDS-H-elongata_contig20567:169..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20567 170..487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20567.5870.1

>prot_H-elongata_contig20567.5870.1 ID=prot_H-elongata_contig20567.5870.1|Name=mRNA_H-elongata_contig20567.5870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MFVPLHGLAGACHLPGRFPDPTRSYVLNNSNVLFINNKRKSTRTVHQACR
NKSSPTNKLFVQCSYSMYSDAAACTTDRRNTSQSCINHRTLSQLHINYIS
GQQKR*
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mRNA from alignment at H-elongata_contig20567:100..624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20567.5870.1 ID=mRNA_H-elongata_contig20567.5870.1|Name=mRNA_H-elongata_contig20567.5870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=525bp|location=Sequence derived from alignment at H-elongata_contig20567:100..624+ (Himanthalia elongata Himel1 dioecious)
GGAGAGAGACGAGATGAGACGACACGCTTCGTATCTCGCTCATTAAAAGT
ACCCGCGTTCTGGTCGACCGATGTTTGTACCACTACATGGGCTGGCGGGC
GCGTGTCATCTGCCGGGGCGGTTCCCGGACCCGACTCGGAGCTACGTACT
AAATAATAGTAATGTCCTATTTATTAATAATAAGAGAAAGAGTACCCGGA
CCGTGCATCAGGCGTGCAGGAACAAAAGTAGCCCAACGAACAAATTATTT
GTTCAATGTAGTTACAGCATGTACAGCGACGCAGCTGCATGTACAACCGA
CAGACGCAACACGAGCCAGTCGTGTATCAACCATAGAACCCTGAGCCAAT
TACATATCAATTACATATCTGGCCAACAAAAACGGTAAACATCCTCAGTC
CTCTCCATTCGCCATGGGTACTATAATACTATAATACTACTGAGTGACTG
CACCACACGGACCGGTCGCCCTCTCGGTGCTCTTCTGTTGCGGTTTTCTT
CCTTCATCGAGGATGCCCTCTTACA
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Coding sequence (CDS) from alignment at H-elongata_contig20567:100..624+

>mRNA_H-elongata_contig20567.5870.1 ID=mRNA_H-elongata_contig20567.5870.1|Name=mRNA_H-elongata_contig20567.5870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig20567:100..624+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGTACCACTACATGGGCTGGCGGGCGCGTGTCATCTGCCGGGGCG
GTTCCCGGACCCGACTCGGAGCTACGTACTAAATAATAGTAATGTCCTAT
TTATTAATAATAAGAGAAAGAGTACCCGGACCGTGCATCAGGCGTGCAGG
AACAAAAGTAGCCCAACGAACAAATTATTTGTTCAATGTAGTTACAGCAT
GTACAGCGACGCAGCTGCATGTACAACCGACAGACGCAACACGAGCCAGT
CGTGTATCAACCATAGAACCCTGAGCCAATTACATATCAATTACATATCT
GGCCAACAAAAACGGTAAATGTTTGTACCACTACATGGGCTGGCGGGCGC
GTGTCATCTGCCGGGGCGGTTCCCGGACCCGACTCGGAGCTACGTACTAA
ATAATAGTAATGTCCTATTTATTAATAATAAGAGAAAGAGTACCCGGACC
GTGCATCAGGCGTGCAGGAACAAAAGTAGCCCAACGAACAAATTATTTGT
TCAATGTAGTTACAGCATGTACAGCGACGCAGCTGCATGTACAACCGACA
GACGCAACACGAGCCAGTCGTGTATCAACCATAGAACCCTGAGCCAATTA
CATATCAATTACATATCTGGCCAACAAAAACGGTAA
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