mRNA_H-elongata_contig205510.5861.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205510.5861.1
Unique NamemRNA_H-elongata_contig205510.5861.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: D8LCY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY1_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.030e-52
Identity = 122/219 (55.71%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    7 DHTPYSAGERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCR----------GSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPG-YPPGVA-----------------------------------------------AFQVAATALTHEAYVRGSTDNIGVCVVDLR 489
            DHTPYSA ERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSH                                G N       AFLVLASDGLWDVVSSQEAVDMV EVI G+SP  +PP  A                                                FQVAATALTHEAYVRGSTDNIGVCVVDLR
Sbjct:  951 DHTPYSASERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKN------TAFLVLASDGLWDVVSSQEAVDMVKEVILGSSPSPFPPSHAPQGASAVVDAAAGVGXXXXXXXXXXXXXXXXXXXGVPRGYGSYVPGQTFQVAATALTHEAYVRGSTDNIGVCVVDLR 1163          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A6H5JL19_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL19_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 3.710e-50
Identity = 120/234 (51.28%), Postives = 122/234 (52.14%), Query Frame = 1
Query:    7 DHTPYSAGERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNG-------------------VDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASP------------------------------------------------GYPPGVAA------FQVAATALTHEAYVRGSTDNIGVCVVDLR 489
            DHTPYSA ERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSR GVLSSEPDV FVSH                                         G N       AFLVLASDGLWDVVSSQEAVDMV EVI G+SP                                                G P G  +      FQVAATALTHEAYVRGSTDNIGVCVVDLR
Sbjct:  348 DHTPYSASERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSRHGVLSSEPDVFFVSHGNDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKN------TAFLVLASDGLWDVVSSQEAVDMVKEVILGSSPSTFHPSHAPXXXXXXXXXXXAAVVDAAVVGEGARPGQDGQPRRWDGGRGVPRGYGSYVSGQTFQVAATALTHEAYVRGSTDNIGVCVVDLR 575          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A836CIC2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIC2_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.230e-26
Identity = 79/175 (45.14%), Postives = 98/175 (56.00%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVE--HRGVLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPG--YPPGVAAF---------QVAATALTHEAYVRGSTDNIGVCVVDLR 489
            +DHTP  A E ARV A GG++E    G  RV G LAVTR +G+  ++   +LSS PDV     +  D A                           FL++ASDGLWDVVSS++AV MV +V+ GA PG   P  +A+F         QVAAT LTH AYV+GSTDNIGVCVV L+
Sbjct:  895 LDHTPRDATEAARVTAAGGAIEIDTSGAPRVEGGLAVTRRIGSGAVNGRALLSSRPDVRTYRFD--DPAF-----------------------DFRFLIVASDGLWDVVSSEDAVAMVEDVVGGAQPGGERPVHLASFGEYGVAQAWQVAATVLTHMAYVQGSTDNIGVCVVSLQ 1044          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A7S0CEJ4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CEJ4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 8.580e-24
Identity = 67/166 (40.36%), Postives = 95/166 (57.23%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVEHRG-VLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIR----GASPGYPPGVAAFQVAATALTHEAYVRGSTDNIGVCVVDL 486
            VDH      E+  +E NGG +E  G + RVNG +AV+R++G+  L+   +LS +P +V ++ + ++               S R S         F+VLASDGLWDV+++QE +DMV  V+R     +   +  G  AFQ AA  LT EAY+RGS+DNIGVCVV L
Sbjct:   48 VDHVASDKNEKKIIEQNGGYIERNGGIERVNGVMAVSRSIGDIPLA--SILSRQPHIVAMTRDEINARCEYVEKTSFAYNTSVRDSK-----MPCFIVLASDGLWDVMNNQEVIDMVQLVLRRHDDDSGISWEDG-GAFQEAAQMLTEEAYIRGSSDNIGVCVVAL 205          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: B8C898_THAPS (PPM-type phosphatase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C898_THAPS)

HSP 1 Score: 103 bits (257), Expect = 8.890e-24
Identity = 73/160 (45.62%), Postives = 88/160 (55.00%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVEHRG-VLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPGYPPGVAAFQVAATALTHEAYVRGSTDNIGVCVV 480
            VDH   S  E+  V A GG +   G + RVN  LAVTR+LG+ RL+    LS  P V  ++   V      GR                      F+VLASDGLWDV+S+QEAVDMV EV++    G     AAFQ AA  LT EA+VRGSTDNIGVCV+
Sbjct:  155 VDHVASSKEEQKLVHARGGFLSKSGGIERVNDSLAVTRSLGDVRLAP--YLSRTPYVYAMTKEEVREKCGDGR---------------------CFIVLASDGLWDVMSNQEAVDMVMEVLKTNESG-----AAFQEAAEMLTQEAFVRGSTDNIGVCVI 286          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A7S4KBH8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KBH8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.170e-23
Identity = 74/165 (44.85%), Postives = 94/165 (56.97%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVEHRGVL-RVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGG--CSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPGYPPGV---AAFQVAATALTHEAYVRGSTDNIGVCVV 480
            VDH   ++ E+  VE  GG V   G + RVNG LAV+R+LG+  L+   VLS  P VV +S   +              +A C+ S+  G       F+VLASDGLWDV+S+QE VD+V + +R   P +        AFQ AA  LT EAYVRGSTDNIGVCVV
Sbjct: 1067 VDHVASNSSEKILVEERGGFVSSAGGIDRVNGTLAVSRSLGDATLAP--VLSRVPHVVAMSTEDI--------------KAQCKKSDQTGEVDELPCFIVLASDGLWDVMSNQEVVDLVVQAVRKFDPSHSISWDKGGAFQEAAQLLTQEAYVRGSTDNIGVCVV 1215          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A7S1D066_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D066_CYCTE)

HSP 1 Score: 101 bits (251), Expect = 3.060e-23
Identity = 71/160 (44.38%), Postives = 90/160 (56.25%), Query Frame = 1
Query:    7 DHTPYSAGERARVEANGGSVEHRG-VLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGV-DRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPGYPPGVAAFQVAATALTHEAYVRGSTDNIGVCVV 480
            DH   +  E+A VE  GG V+  G + RV G+LA+TR+LG+  L+    LS EP VV ++ + + D A  A               +        F+VLASDGLWDV+++QE VDMV E I         G  AFQ AA  LT EAY+RGSTDNIGVCVV
Sbjct:  105 DHVASNPDEQAMVEERGGYVQKEGGIFRVAGKLAITRSLGDSHLAP--YLSREPHVVVMTKDELLDDAVCA---------------SSASSPLPCFVVLASDGLWDVMTNQEVVDMVAEEIEMTEGWEEQG--AFQKAAERLTQEAYIRGSTDNIGVCVV 245          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A7S2AVR4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AVR4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.710e-23
Identity = 76/177 (42.94%), Postives = 99/177 (55.93%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVEHRG-VLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMV------NEVI--RGASPGYPPG----VAAFQVAATALTHEAYVRGSTDNIGVCVVDLRPR 495
            VDHT  +A E  R+   GG +E  G V RV G++AVTR++GNR L R   LS+ P  V ++ +  +           GT+   R           FLVLA+DGLWDV+SS+EAV  V      +E I   G S  Y       +  +Q AATALTHEA VRGS+DNIGVCV++L+ R
Sbjct:   37 VDHTAMNALEAKRIIDLGGFIETSGEVHRVMGKVAVTRSIGNRPLKR--YLSASPHTVILNLSHTEAM---------GTQVEFR-----------FLVLATDGLWDVMSSEEAVAFVLNRLKHSEAIGKEGDSDSYSDSEGVRMGFWQQAATALTHEALVRGSSDNIGVCVINLQSR 191          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: A0A7S2L258_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L258_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.200e-22
Identity = 72/168 (42.86%), Postives = 92/168 (54.76%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVEHRG-VLRVNGELAVTRTLGNRRLSRDGVLSSEPDV-VFVSHNGVDRAHAAGR--DGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPGYPPGVA-----AFQVAATALTHEAYVRGSTDNIGVCVV 480
            VDHTP    ER RVE  GG ++  G   RV G LA+TR++G+  ++    L   P V VF      ++    GR    D      C            F+VLASDGLWDVVS+++AV++V  V+R        G++     AFQ AA  LTHEAY+RGSTDNIGVCVV
Sbjct:    6 VDHTPADNFERERVEKAGGFIKSEGGTSRVGGLLAITRSIGDAHIAE--FLVRTPHVTVFTRQELRNQCKPEGRIVGDDSADDIPC------------FVVLASDGLWDVVSNEDAVNLVVHVLR--QHDSENGISWEKGGAFQEAAQRLTHEAYIRGSTDNIGVCVV 157          
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Match: K0SQI8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQI8_THAOC)

HSP 1 Score: 101 bits (251), Expect = 4.850e-22
Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 1
Query:    4 VDHTPYSAGERARVEANGGSVEHRG-VLRVNGELAVTRTLGNRRLSRDGVLSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLASDGLWDVVSSQEAVDMVNEVIRGASPGYPPGVAAFQVAATALTHEAYVRGSTDNIGVCVVDL 486
            VDH   +  E+A VE+ GGS+   G + RV G+LAVTR+LG+ +L+    LS +P V   +                   A C     G   ++ F++LASDGLWDV+S+QEA+D+  +V+          VA+FQ AA  LT EAY+RGS+DNIGVCVV +
Sbjct:  320 VDHIASAPNEQALVESKGGSISKSGGIERVQGKLAVTRSLGDVKLAP--FLSQDPHVFVATKADF--------------FALC-----GTYKRSCFIILASDGLWDVMSNQEAIDLAWQVVETEKGS----VASFQEAAEVLTQEAYIRGSSDNIGVCVVSI 456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205510.5861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY1_ECTSI1.030e-5255.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL19_9PHAE3.710e-5051.28PPM-type phosphatase domain-containing protein n=1... [more]
A0A836CIC2_9STRA3.230e-2645.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0CEJ4_9STRA8.580e-2440.36Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8C898_THAPS8.890e-2445.63PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S4KBH8_9STRA2.170e-2344.85Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1D066_CYCTE3.060e-2344.38Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2AVR4_9STRA6.710e-2342.94Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2L258_9STRA1.200e-2242.86Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0SQI8_THAOC4.850e-2241.36Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205510contigH-elongata_contig205510:82..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.5e-46
Seed eggNOG ortholog2880.D8LCY1
KEGG koko:K17501
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size498
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.107203-CDS-H-elongata_contig205510:81..1801622930151.107203-CDS-H-elongata_contig205510:81..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205510 82..180 -
1691679300.6072924-CDS-H-elongata_contig205510:81..1801691679300.6072924-CDS-H-elongata_contig205510:81..180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205510 82..180 -
1622930151.1188629-CDS-H-elongata_contig205510:285..6841622930151.1188629-CDS-H-elongata_contig205510:285..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205510 286..684 -
1691679300.6168296-CDS-H-elongata_contig205510:285..6841691679300.6168296-CDS-H-elongata_contig205510:285..684Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205510 286..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205510.5861.1prot_H-elongata_contig205510.5861.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205510 82..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205510.5861.1

>prot_H-elongata_contig205510.5861.1 ID=prot_H-elongata_contig205510.5861.1|Name=mRNA_H-elongata_contig205510.5861.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
MVDHTPYSAGERARVEANGGSVEHRGVLRVNGELAVTRTLGNRRLSRDGV
LSSEPDVVFVSHNGVDRAHAAGRDGDRGTRASCRGSNGGGCSKAAFLVLA
SDGLWDVVSSQEAVDMVNEVIRGASPGYPPGVAAFQVAATALTHEAYVRG
STDNIGVCVVDLRPR*
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mRNA from alignment at H-elongata_contig205510:82..684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205510.5861.1 ID=mRNA_H-elongata_contig205510.5861.1|Name=mRNA_H-elongata_contig205510.5861.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig205510:82..684- (Himanthalia elongata Himel1 dioecious)
ATGGTAGACCATACCCCGTACAGCGCGGGCGAACGCGCGCGCGTGGAGGC CAATGGCGGCTCGGTCGAGCACCGAGGCGTTCTTCGCGTCAACGGGGAAC TGGCGGTCACGCGGACGCTGGGTAACCGCCGGCTCAGCCGCGACGGGGTA CTGTCCTCCGAACCTGACGTCGTCTTCGTCTCTCACAACGGGGTAGACAG GGCTCACGCGGCGGGGAGAGACGGCGACCGTGGAACTAGAGCATCCTGTC GAGGCAGCAATGGCGGCGGTTGTAGCAAGGCGGCTTTTTTGGTCCTAGCC TCTGATGGCCTGTGGGACGTGGTCTCCAGTCAGGAGGCAGTTGACATGGT AAATGAGGTCATTCGCGGCGCATCCCCCGGGTATCCCCCTGGGGTCGCCG TGCCGCCGTCCACCGGCGTAGGAGAGATAAATATGGGGGAAATGAGCGAT GTGAGATCGCGGGGCGCGGTGGCGAGAGCTTACGGTTTGTACGGGCCTGG CCAGGCGTTTCAGGTAGCGGCTACCGCTCTCACTCACGAGGCGTATGTTC GCGGAAGCACGGACAACATAGGTGTATGTGTGGTTGATCTGCGGCCTCGC TAG
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Coding sequence (CDS) from alignment at H-elongata_contig205510:82..684-

>mRNA_H-elongata_contig205510.5861.1 ID=mRNA_H-elongata_contig205510.5861.1|Name=mRNA_H-elongata_contig205510.5861.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig205510:82..684- (Himanthalia elongata Himel1 dioecious)
ATGGTAGACCATACCCCGTACAGCGCGGGCGAACGCGCGCGCGTGGAGGC
CAATGGCGGCTCGGTCGAGCACCGAGGCGTTCTTCGCGTCAACGGGGAAC
TGGCGGTCACGCGGACGCTGGGTAACCGCCGGCTCAGCCGCGACGGGGTA
CTGTCCTCCGAACCTGACGTCGTCTTCGTCTCTCACAACGGGGTAGACAG
GGCTCACGCGGCGGGGAGAGACGGCGACCGTGGAACTAGAGCATCCTGTC
GAGGCAGCAATGGCGGCGGTTGTAGCAAGGCGGCTTTTTTGGTCCTAGCC
TCTGATGGCCTGTGGGACGTGGTCTCCAGTCAGGAGGCAGTTGACATGGT
AAATGAGGTCATTCGCGGCGCATCCCCCGGGTATCCCCCTGGGGTCGCCA
TGGTAGACCATACCCCGTACAGCGCGGGCGAACGCGCGCGCGTGGAGGCC
AATGGCGGCTCGGTCGAGCACCGAGGCGTTCTTCGCGTCAACGGGGAACT
GGCGGTCACGCGGACGCTGGGTAACCGCCGGCTCAGCCGCGACGGGGTAC
TGTCCTCCGAACCTGACGTCGTCTTCGTCTCTCACAACGGGGTAGACAGG
GCTCACGCGGCGGGGAGAGACGGCGACCGTGGAACTAGAGCATCCTGTCG
AGGCAGCAATGGCGGCGGTTGTAGCAAGGCGGCTTTTTTGGTCCTAGCCT
CTGATGGCCTGTGGGACGTGGTCTCCAGTCAGGAGGCAGTTGACATGGTA
AATGAGGTCATTCGCGGCGCATCCCCCGGGTATCCCCCTGGGGTCGCCGC
GTTTCAGGTAGCGGCTACCGCTCTCACTCACGAGGCGTATGTTCGCGGAA
GCACGGACAACATAGGTGTATGTGTGGTTGATCTGCGGCCTCGCTAGGCG
TTTCAGGTAGCGGCTACCGCTCTCACTCACGAGGCGTATGTTCGCGGAAG
CACGGACAACATAGGTGTATGTGTGGTTGATCTGCGGCCTCGCTAG
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