mRNA_H-elongata_contig20547.5859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20547.5859.1
Unique NamemRNA_H-elongata_contig20547.5859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20547.5859.1 vs. uniprot
Match: D7G2I3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I3_ECTSI)

HSP 1 Score: 265 bits (677), Expect = 2.980e-86
Identity = 139/210 (66.19%), Postives = 168/210 (80.00%), Query Frame = 1 
Query:  100 SDHSRSSKNIVYRFTHGFMMEMLKRKMLYSQQDFLRARIQKLKDSLETQRRHEDLKNQTIDTGQKYKSGMLQVMKHKVTKVQAATNARKTTRRRRDTMASRALTRVSQPVQQKWGERVDWKKRKCLLMGESLYLFKEQRDKEPSEVVFLQDATAEPELGEVFKESGFRVETSLWKKGDEVVDCTEGSKRRTFTFLAECKDDKEIWLFQIR 729
            S H     N+VY FTHGFMMEML+ KML SQ + L+  IQKLKD LETQ+RHE  KNQTID  QK K+G L VMK+KVT  QAATNAR++TRRR++++ SRA+ RV +PVQQKW E +DWKKR CLL GESL LF + +D EPS++V+L+ ATAEPELG+ FK+S FRVET+ WKKGDEVVD   G++RRTFTFLAE KDDKE+WL+QIR
Sbjct:   32 SRHLWGIPNVVYTFTHGFMMEMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEQFKNQTIDKSQKQKAGTLSVMKYKVTMSQAATNARESTRRRKNSVTSRAMQRVKRPVQQKWTEALDWKKRSCLLTGESLSLFSDPKDTEPSQIVYLKGATAEPELGQAFKDSAFRVETNKWKKGDEVVD---GTERRTFTFLAESKDDKELWLYQIR 238
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BLAST of mRNA_H-elongata_contig20547.5859.1 vs. uniprot
Match: A0A6H5JJ45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ45_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 1.080e-79
Identity = 147/270 (54.44%), Postives = 182/270 (67.41%), Query Frame = 1 
Query:   16 FLVEVQGEQAQDVIETEGCGRSKL--------------------------------NQTESDHSRSSKNIVYRFTHGFMMEMLKRKMLYSQQDFLRARIQKLKDSLETQRRHEDLKNQTIDTGQKYKSGMLQVMKHKVTKVQAATNARKTTRRRRDTMASRALTRVSQPVQQKWGERVDWKKRKCLLMGESLYLFKEQRDKEPSEVVFLQDATAEPELGEVFKESGFRVETSLWKKGDEVVDCTEGSKRRTFTFLAECKDDKEIWLFQIR 729
            FLVEVQG  A  VI+ EG  R  +                                 +  S H     N+VY FTHGFM EML+ KML SQ + L+  IQKLKD LETQ+RHE+ KN+TID   K+K G L VMKHKVT  QAATNAR++TRRR++++ SRA+ +V +PVQQKW E VDWKKR C+L GESL LF + +D EPS++V+L  ATAEPELG+ FKES FRVET+ WKKGD++VD   G++RRTFTFLAE KDD+E+WL+QIR
Sbjct:  274 FLVEVQGAPASVVIKEEGWARPSIAAARGMSLDRSSGRVGDGKSGKGGXXXSSVVVGKDSSRHLWGIPNVVYTFTHGFMREMLQLKMLKSQTNLLKTSIQKLKDRLETQKRHEEFKNETIDKSHKHKEGTLSVMKHKVTMSQAATNARESTRRRKNSVTSRAMRKVKRPVQQKWTEAVDWKKRSCILTGESLSLFSDPKDTEPSQIVYLTGATAEPELGQAFKESAFRVETNKWKKGDDLVD---GTERRTFTFLAESKDDRELWLYQIR 540
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20547.5859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2I3_ECTSI2.980e-8666.19PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JJ45_9PHAE1.080e-7954.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20547contigH-elongata_contig20547:263..4306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-12_001630.1
Exons6
Model size729
Cds size729
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20547.5859.1prot_H-elongata_contig20547.5859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20547 263..4306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930150.8722632-CDS-H-elongata_contig20547:262..3991622930150.8722632-CDS-H-elongata_contig20547:262..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 263..399 +
1691679300.5027156-CDS-H-elongata_contig20547:262..3991691679300.5027156-CDS-H-elongata_contig20547:262..399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 263..399 +
1622930150.8860662-CDS-H-elongata_contig20547:932..10621622930150.8860662-CDS-H-elongata_contig20547:932..1062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 933..1062 +
1691679300.517675-CDS-H-elongata_contig20547:932..10621691679300.517675-CDS-H-elongata_contig20547:932..1062Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 933..1062 +
1622930150.9012914-CDS-H-elongata_contig20547:1771..18491622930150.9012914-CDS-H-elongata_contig20547:1771..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 1772..1849 +
1691679300.528048-CDS-H-elongata_contig20547:1771..18491691679300.528048-CDS-H-elongata_contig20547:1771..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 1772..1849 +
1622930150.917194-CDS-H-elongata_contig20547:3025..31271622930150.917194-CDS-H-elongata_contig20547:3025..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 3026..3127 +
1691679300.5373063-CDS-H-elongata_contig20547:3025..31271691679300.5373063-CDS-H-elongata_contig20547:3025..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 3026..3127 +
1622930150.93496-CDS-H-elongata_contig20547:3506..36381622930150.93496-CDS-H-elongata_contig20547:3506..3638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 3507..3638 +
1691679300.5469916-CDS-H-elongata_contig20547:3506..36381691679300.5469916-CDS-H-elongata_contig20547:3506..3638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 3507..3638 +
1622930150.952631-CDS-H-elongata_contig20547:4156..43061622930150.952631-CDS-H-elongata_contig20547:4156..4306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 4157..4306 +
1691679300.5565865-CDS-H-elongata_contig20547:4156..43061691679300.5565865-CDS-H-elongata_contig20547:4156..4306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20547 4157..4306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20547.5859.1

>prot_H-elongata_contig20547.5859.1 ID=prot_H-elongata_contig20547.5859.1|Name=mRNA_H-elongata_contig20547.5859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MLSSRFLVEVQGEQAQDVIETEGCGRSKLNQTESDHSRSSKNIVYRFTHG
FMMEMLKRKMLYSQQDFLRARIQKLKDSLETQRRHEDLKNQTIDTGQKYK
SGMLQVMKHKVTKVQAATNARKTTRRRRDTMASRALTRVSQPVQQKWGER
VDWKKRKCLLMGESLYLFKEQRDKEPSEVVFLQDATAEPELGEVFKESGF
RVETSLWKKGDEVVDCTEGSKRRTFTFLAECKDDKEIWLFQIR
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mRNA from alignment at H-elongata_contig20547:263..4306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20547.5859.1 ID=mRNA_H-elongata_contig20547.5859.1|Name=mRNA_H-elongata_contig20547.5859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4044bp|location=Sequence derived from alignment at H-elongata_contig20547:263..4306+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTCGAGCAGGTTTCTGGTGGAGGTTCAGGGAGAACAGGCACAGGA
CGTGATCGAAACCGAGGGCTGCGGGAGGTCGAAGTTAAACCAGACTGAGT
CCGATCACTCGCGCTCCTCGAAGAACATTGTCTATCGGTGAGACAGCAGC
AGTAGCTGCAGCAACAGTGAGGATTGGACTCGAGGATGCCACTCTGGCTT
TTTATTTTTTAAAACCTTGAACTCTTTCCAACCCTCCAAAGGGAGTCTCG
TTTTGTAGTGTGTGTATATATATGTGTGTGTATATATTTGTTAAATTGCA
CATAATAACCGCGAAGGCAATCCGCCCCTGTTATATAGCAGTGTAGTATG
GATCAATAGTTGCCAATCCTTCCATTCCTATTATAGGTAATGAGTTTTCC
CCTTTATGCCCGTTCGCCCCTGAGAAATAAATAAAATATTTACATGCAAT
GTGGTGTATTAATAGTAACCGGAGACGCAGCTGTACCGCTCTGTGTTTTC
GGAGAGGCTTTTTTTTTCTTTTCTTTTTTTTCTCGAAGCTGTGTCACGCT
TTTGGGTTGTTTTGTCGGAGCCTCTCCAGTTCGTTTGGTGCCCGAGCCGG
AATGGCTATGGCTGTGGCTGTTTGTGCTGATGGTAGTTGTTCTGGTTGTG
CGTGCATTCTGCTGCTGAAGATTCACGCACGGCTTTATGATGGAGATGTT
AAAGCGGAAGATGCTCTACAGCCAACAGGACTTCCTTCGTGCGCGCATCC
AGAAGCTGAAGGACAGCCTAGAGACACAGCGGAGGCACGAGGATCTCAAG
GTTGGTCACGACGGGGCGCCAAAAAAGTTCGCTCCGGGCTGGCTCTTGTC
TGTAAAACTATTTTTTTAAAGGGCGTGGGGGAGCTCTCATGTAGTGTGTC
TTCTGAGGTGAGAGGCCTTGGTCGAAACGCGTAACAATGGACTGTTGAGA
AGCTCTGGAGCGTCCATCGAGTTATGAGAGGTACTCTTCAAAGATCATTC
ATGAGCAAACCATAGTCTTGAGTGTATCATACATTATATATACCGTTGGG
TATGTAGGTCGCGCGTAGGCTAAAGTCTCTTTGAGGTATTTGGAGTTTAG
TCGCGGCCCGCTGAATACGCAAATATTTGACTACCCGGTGGCGTCCAGTT
AACCTAACCGGGTTTGGCTTGGCATACGTGGTTTGGCGCAGGAAACGCAA
GGATGATGACCAAAAACTGGTTTTATCCTTGCCATGCGCAGCCTCGCCCG
TGGAAGCCCGGTATATCGCCCCGTTCCAACATTTTTGGATGCGTGGTGTT
TGTCTATTAGTACTGTATACGACATGCGTTTAACATAAGTACACCCCCTC
CCCCCTATCCCCTATCCCTCCTCACTTTCCCCCTCGAGAGCCCCTACCCT
ACCCACTGGGACCTTAGATTGAAAGCACCTTGAACCCGATCATCACGTGC
CCCCCAATCATCACAACTCGACGGCCCCGCTTCCCTCTCGCCGCGGCCCT
CGCGCACAGAACCAAACCATCGACACGGGTCAGAAATACAAGTCTGGTAT
GCTGCAGGTGATGAAGCACAAGGTCACAAAGGTCCAGGTGAGATTGGCCT
GACTCCACTCGATCAGCTCTCCGAGCGTCTAGCCACATGCCGTTACATTT
ACAGGGTACCTTTCGTGTTACGCGCGTGGTTTTCATGCCGCTGGTTGATG
CTTCCGATAGTGTTACCGTACCCTTTACTATTAATTTACTAATATTCATT
TTGACTGTTGTCGGCTATCCCATTTTTTGTTTTGTTTTTGTTTTTGTTTT
TTTATCGCCCGGTTGTGATTCGGTAGTGGTCAGAGTTCCTCGCGGTACGG
TATTGTACGATTGCCTCTTACCACTCGCTCCATTTGGCGTTACTCTACAG
TATCGCCGCCGTAGATTTTGACATCAATTTCTTTACATCTGATCTCGTCG
TAACGTTACGGTTACGCACCCGTTACGGTTCCATGTGGTATTATCGTGCC
GTTGTGATTCGATGGTGGTTACCACTCGTTTTATTTGACGTTACTCTTCC
GTTACGGTTCGGTAAACCGTTACTCTTCTGTTGCCGTCAAAAAGGGCAAT
CTGATAATATGATTATCTGGCCTAAACAAAGGTTGGAATTATGATTTTGT
GTTAACTTGCCTCGCTGATACATCAACGACGAATCGGTTGATCGGTGGGT
AGCCACGGCCTGGACCCCCTTTCCCCCCCTACTCTCTATTGTTTGAATGG
ATTCGATCTCCCTTAACTACTCGTGCTTACAGCGGCGGTACGTCCACTTC
CCCTCAATTATATATCTACATACACCACATGTCCACGCTCCTTCCGAGCC
TTTGCGGCCGTGCATACGATCTACGGTTACCATGCTTTTTATCGAGATTT
TCCGTGGTTCTTACCTTGGTTGGTTGTTAGCCCCCCTGCCCTGCTCCGTT
TAACTCTGTGTGTCCTATCAATCCATAACATTTCTGGTTTGGCGTAGCAG
CAAACACGAGTGTGATGGCTAAAAGCCGGTATCATCTCTTGTGAAACGCA
CCCTGGCCAGTGAACACCCGGCATATCGCTCTGTGCCGATATTGTTAGGA
TGCGCGTTTTTTATATGTCCGTTAGATTACGGTATGCTTTTACCATTAAG
TTTCCCCCCCTACCCCCTACGTCGAAAATAAAATACTATTACTACTTTAG
TACATCCGTGGCATTATTAATATTGCGCTATACTGGTGTATAATTTCGAT
CGATTTTTGGAAGGCGGCGACAAACGCGCGCAAAACGACGCGGCGGAGAA
GGGACACAATGGCCTCCAGGGCCTTGACGAGGGTCAGTCAGCCCGTGCAG
CAGAAGTGGGGAGAGGTAAGGATAACTCCATCTTGACATGGAAAACCTTC
AGTGGCTTGTATCTCAAGGGGTTGAACGCTGCAAGGTTTTGCCCTTTTGG
CTCCTGAGTCGATTTTTCCTGACAGTTTTGGAGAAAATTCGTACATAATT
TTAATTTGGTCGGAGTTAAAATTGCGTAAGGGGAGTTTGCTTATTTTTAA
TTTTTGCTTGTGGCGTTTATGGTTTATTACGGCTTTGATATAATTTTATT
GTCTTTTTTGTTATATTTTTCGCTTATTATAATTATTATCATTACTACTA
GTATTATTTTATTTTTTAAAGTAATGTCATACCGCCTTACCTTACCCTGC
TCCTCCTGCGTTCCCTTCCATTTCCTCTCTTTCCTTTGTCAAAGAGGGTC
GACTGGAAAAAACGCAAGTGCCTTCTGATGGGCGAGAGCCTGTATCTGTT
CAAGGAACAGCGAGACAAGGAGCCTAGCGAGGTGGTGTTCTTGCAAGACG
CAACCGCAGAGCCCGAGCTCGGGGAGGTAACTCAGCCTTGGCACACTCAC
ATAATTTAACAAATACACACAAACACACACGCGTGCCTGCGTGTCTGCGT
TTGTATGTTGGTGGTGCGTGGCGTCACGTGACGTCACGTCGCCTCTTACC
AGGGTCTGCCTTAAAAAAGGTGGATTGCGCCTCAGTCCCACATTTTTTGT
CGGGCCGCGTGATAACACTTATGAAGTACATGTCCAATGAACGAATCGGG
TTCCAGGTGCGGTCGTAAGGTGGCCGTGCGGAGGCTGAGATCAATACTTT
ATTCGTGAGCGTGGGGGGGGTGGGGAATACGATCGAAGATCTCGAAGATG
CGTGGTCCAGCGTTAAAAACACCCGTGGATTTCTTGATGTCGGGGCACGT
AAATCCGGGCGCGAGAGCGCGCGAGTCCCCCACCCCCAAGCGTGCGCACC
GAAAAACGCGCGCAATGGCCGAAGATACGTTGTATTTTTGACAACTCCTG
TCTCTTGTTCCCGATCGCCATTATGAACCGATACGGATTCGCAGGTGTTC
AAGGAGTCGGGCTTCCGGGTGGAGACCTCGCTGTGGAAGAAGGGCGACGA
GGTCGTGGACTGCACGGAAGGAAGTAAGCGACGCACGTTTACCTTCCTCG
CCGAGTGCAAGGACGATAAGGAGATCTGGCTCTTCCAGATCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig20547:263..4306+

>mRNA_H-elongata_contig20547.5859.1 ID=mRNA_H-elongata_contig20547.5859.1|Name=mRNA_H-elongata_contig20547.5859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig20547:263..4306+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTCGAGCAGGTTTCTGGTGGAGGTTCAGGGAGAACAGGCACAGGA
CGTGATCGAAACCGAGGGCTGCGGGAGGTCGAAGTTAAACCAGACTGAGT
CCGATCACTCGCGCTCCTCGAAGAACATTGTCTATCGATGTTGTCGAGCA
GGTTTCTGGTGGAGGTTCAGGGAGAACAGGCACAGGACGTGATCGAAACC
GAGGGCTGCGGGAGGTCGAAGTTAAACCAGACTGAGTCCGATCACTCGCG
CTCCTCGAAGAACATTGTCTATCGATTCACGCACGGCTTTATGATGGAGA
TGTTAAAGCGGAAGATGCTCTACAGCCAACAGGACTTCCTTCGTGCGCGC
ATCCAGAAGCTGAAGGACAGCCTAGAGACACAGCGGAGGCACGAGGATCT
CAAGATTCACGCACGGCTTTATGATGGAGATGTTAAAGCGGAAGATGCTC
TACAGCCAACAGGACTTCCTTCGTGCGCGCATCCAGAAGCTGAAGGACAG
CCTAGAGACACAGCGGAGGCACGAGGATCTCAAGAACCAAACCATCGACA
CGGGTCAGAAATACAAGTCTGGTATGCTGCAGGTGATGAAGCACAAGGTC
ACAAAGGTCCAGAACCAAACCATCGACACGGGTCAGAAATACAAGTCTGG
TATGCTGCAGGTGATGAAGCACAAGGTCACAAAGGTCCAGGCGGCGACAA
ACGCGCGCAAAACGACGCGGCGGAGAAGGGACACAATGGCCTCCAGGGCC
TTGACGAGGGTCAGTCAGCCCGTGCAGCAGAAGTGGGGAGAGGCGGCGAC
AAACGCGCGCAAAACGACGCGGCGGAGAAGGGACACAATGGCCTCCAGGG
CCTTGACGAGGGTCAGTCAGCCCGTGCAGCAGAAGTGGGGAGAGAGGGTC
GACTGGAAAAAACGCAAGTGCCTTCTGATGGGCGAGAGCCTGTATCTGTT
CAAGGAACAGCGAGACAAGGAGCCTAGCGAGGTGGTGTTCTTGCAAGACG
CAACCGCAGAGCCCGAGCTCGGGGAGAGGGTCGACTGGAAAAAACGCAAG
TGCCTTCTGATGGGCGAGAGCCTGTATCTGTTCAAGGAACAGCGAGACAA
GGAGCCTAGCGAGGTGGTGTTCTTGCAAGACGCAACCGCAGAGCCCGAGC
TCGGGGAGGTGTTCAAGGAGTCGGGCTTCCGGGTGGAGACCTCGCTGTGG
AAGAAGGGCGACGAGGTCGTGGACTGCACGGAAGGAAGTAAGCGACGCAC
GTTTACCTTCCTCGCCGAGTGCAAGGACGATAAGGAGATCTGGCTCTTCC
AGATCAGGGTGTTCAAGGAGTCGGGCTTCCGGGTGGAGACCTCGCTGTGG
AAGAAGGGCGACGAGGTCGTGGACTGCACGGAAGGAAGTAAGCGACGCAC
GTTTACCTTCCTCGCCGAGTGCAAGGACGATAAGGAGATCTGGCTCTTCC
AGATCAGG
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