mRNA_H-elongata_contig205021.5847.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205021.5847.1
Unique NamemRNA_H-elongata_contig205021.5847.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A8E5F7C1_9PHAE (Ribosomal protein L36 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5F7C1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.920e-13
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVRSSVKKI EKC+IIRRHGRV VIC++ KHKQRQG
Sbjct:    1 MKVRSSVKKICEKCKIIRRHGRVYVICINFKHKQRQG 37
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A8F0JXU2_9PHAE (Ribosomal protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXU2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.990e-13
Identity = 28/37 (75.68%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVR S+KK+ +KCR+IRRHGRVQ+IC++LKHKQRQG
Sbjct:    1 MKVRPSIKKMCDKCRVIRRHGRVQIICINLKHKQRQG 37
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A1I9LVN1_9PHAE (50S ribosomal protein L36, chloroplastic n=54 Tax=Stramenopiles TaxID=33634 RepID=A0A1I9LVN1_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVR SVKK+ EKCRIIRRHGRVQV+C +LKHKQRQG
Sbjct:    1 MKVRPSVKKMCEKCRIIRRHGRVQVMCSNLKHKQRQG 37
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A8F0F9V3_9PHAE (Ribosomal protein n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V3_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.010e-12
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVR SVKK+ EKCR+IRR GRVQVIC++LKHKQRQG
Sbjct:    1 MKVRPSVKKMCEKCRVIRRRGRVQVICINLKHKQRQG 37
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A8E5XRN8_9PHAE (50S ribosomal protein L36, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRN8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVR S+KKI EKCR+IRRHGRVQ+IC + KHKQRQG
Sbjct:    1 MKVRPSIKKICEKCRVIRRHGRVQIICTNPKHKQRQG 37
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: D1GJR4_FUCVE (50S ribosomal protein L36, chloroplastic n=1 Tax=Fucus vesiculosus TaxID=49266 RepID=D1GJR4_FUCVE)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKV  SVKKI E CRIIRRHGRVQVIC +LKHKQRQG
Sbjct:    1 MKVGPSVKKICENCRIIRRHGRVQVICTNLKHKQRQG 37
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BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A1G4NT66_9FLOR (50S ribosomal protein L36, chloroplastic n=3 Tax=cellular organisms TaxID=131567 RepID=A0A1G4NT66_9FLOR)

HSP 1 Score: 61.2 bits (147), Expect = 8.200e-12
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVR SVKKI EKCR+IRRHG+V VIC++ KHKQRQG
Sbjct:    1 MKVRPSVKKICEKCRVIRRHGKVMVICINPKHKQRQG 37
[Close]
BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A3B9QEQ2_9FIRM (50S ribosomal protein L36 n=1 Tax=Clostridiales bacterium UBA9857 TaxID=2060923 RepID=A0A3B9QEQ2_9FIRM)

HSP 1 Score: 61.2 bits (147), Expect = 8.200e-12
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVRSSVKK+ EKCRIIRRHGRV V+C + KHKQRQG
Sbjct:    1 MKVRSSVKKMCEKCRIIRRHGRVMVVCSNPKHKQRQG 37
[Close]
BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A6G6YCC1_9FLOR (50S ribosomal protein L36, chloroplastic n=1 Tax=Halymenia maculata TaxID=159591 RepID=A0A6G6YCC1_9FLOR)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-11
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVRSSVKKI EKCRIIRRH RV VIC + KHKQRQG
Sbjct:    1 MKVRSSVKKICEKCRIIRRHRRVMVICTNNKHKQRQG 37
[Close]
BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Match: A0A7C4UUR9_9BACT (50S ribosomal protein L36 n=3 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4UUR9_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.660e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG 111
            MKVRSSVKKI EKC+IIRRHG+V+VIC + KHKQRQG
Sbjct:    1 MKVRSSVKKICEKCKIIRRHGQVRVICQNPKHKQRQG 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205021.5847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8E5F7C1_9PHAE4.920e-1383.78Ribosomal protein L36 n=1 Tax=Phaeophyceae sp. Tax... [more]
A0A8F0JXU2_9PHAE6.990e-1375.68Ribosomal protein n=1 Tax=Protohalopteris sp. TaxI... [more]
A0A1I9LVN1_9PHAE1.410e-1283.7850S ribosomal protein L36, chloroplastic n=54 Tax=... [more]
A0A8F0F9V3_9PHAE2.010e-1281.08Ribosomal protein n=1 Tax=Chorda asiatica TaxID=12... [more]
A0A8E5XRN8_9PHAE2.850e-1278.3850S ribosomal protein L36, chloroplastic n=1 Tax=I... [more]
D1GJR4_FUCVE5.770e-1283.7850S ribosomal protein L36, chloroplastic n=1 Tax=F... [more]
A0A1G4NT66_9FLOR8.200e-1278.3850S ribosomal protein L36, chloroplastic n=3 Tax=c... [more]
A0A3B9QEQ2_9FIRM8.200e-1281.0850S ribosomal protein L36 n=1 Tax=Clostridiales ba... [more]
A0A6G6YCC1_9FLOR1.660e-1183.7850S ribosomal protein L36, chloroplastic n=1 Tax=H... [more]
A0A7C4UUR9_9BACT1.660e-1181.0850S ribosomal protein L36 n=3 Tax=Candidatus Hydro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205021contigH-elongata_contig205021:200..313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue6.3e-09
Seed eggNOG ortholog2880.D1J734
Preferred namerpl36
KEGG koko:K02919
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.structural constituent of ribosome
EggNOG OGs2CZUB@1,2SBPU@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.3998768-CDS-H-elongata_contig205021:199..3131622930149.3998768-CDS-H-elongata_contig205021:199..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205021 200..313 -
1691679299.8545885-CDS-H-elongata_contig205021:199..3131691679299.8545885-CDS-H-elongata_contig205021:199..313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205021 200..313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205021.5847.1prot_H-elongata_contig205021.5847.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205021 200..313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205021.5847.1

>prot_H-elongata_contig205021.5847.1 ID=prot_H-elongata_contig205021.5847.1|Name=mRNA_H-elongata_contig205021.5847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MKVRSSVKKIGEKCRIIRRHGRVQVICVSLKHKQRQG*
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mRNA from alignment at H-elongata_contig205021:200..313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205021.5847.1 ID=mRNA_H-elongata_contig205021.5847.1|Name=mRNA_H-elongata_contig205021.5847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig205021:200..313- (Himanthalia elongata Himel1 dioecious)
ATGAAAGTTAGATCATCAGTAAAAAAAATTGGTGAAAAATGTCGTATAAT
TCGTCGTCACGGTAGGGTTCAAGTAATTTGTGTTAGCCTTAAACATAAGC
AACGCCAAGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig205021:200..313-

>mRNA_H-elongata_contig205021.5847.1 ID=mRNA_H-elongata_contig205021.5847.1|Name=mRNA_H-elongata_contig205021.5847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig205021:200..313- (Himanthalia elongata Himel1 dioecious)
ATGAAAGTTAGATCATCAGTAAAAAAAATTGGTGAAAAATGTCGTATAAT
TCGTCGTCACGGTAGGGTTCAAGTAATTTGTGTTAGCCTTAAACATAAGC
AACGCCAAGGATAAATGAAAGTTAGATCATCAGTAAAAAAAATTGGTGAA
AAATGTCGTATAATTCGTCGTCACGGTAGGGTTCAAGTAATTTGTGTTAG
CCTTAAACATAAGCAACGCCAAGGATAA
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