mRNA_H-elongata_contig205005.5844.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.580e-27 Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLE 186
D+VRDD STYHVADYDP TG+LV++GTYQG+ D STWSRGQAWAIYG+ M+YRYLKE RFL+
Sbjct: 136 DLVRDDYSTYHVADYDPSTGELVDKGTYQGWQDDSTWSRGQAWAIYGFTMVYRYLKEQRFLD 197
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: D8LHN8_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN8_ECTSI) HSP 1 Score: 109 bits (272), Expect = 4.930e-27 Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSKACLK 207
DIVR+DNST HVA YD DTG+ +E GTYQGY++SSTW+RGQAWAIYGY M+YR+L E RFL+RS LK
Sbjct: 223 DIVREDNSTNHVAAYDIDTGEFIETGTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLK 291
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 110 bits (274), Expect = 1.600e-26 Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSKACL 204
D+VR+D STYHVADYDP TGDL ++GTYQG+ D STWSRGQAWA+YG+ M++RYLK+ RFL+RS L
Sbjct: 136 DLVREDYSTYHVADYDPSTGDLEDKGTYQGWQDDSTWSRGQAWAVYGFAMVHRYLKDERFLDRSILTL 203
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE) HSP 1 Score: 109 bits (272), Expect = 3.280e-26 Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSKACLK 207
DIVR+DNST HVA YD DTG+L+E GTYQGY++SSTW+RGQAWAIYGY M+YR+L E RFL+RS L+
Sbjct: 260 DIVREDNSTNHVAAYDIDTGELIETGTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLE 328
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 104 bits (259), Expect = 1.740e-24 Identity = 43/62 (69.35%), Postives = 57/62 (91.94%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLE 186
D+VRDD ST+HVADY+ TG+LV++GTYQG+ D STWSRGQAWAIYG++M++RYL++PRFL+
Sbjct: 194 DLVRDDYSTFHVADYNKSTGELVDKGTYQGWQDDSTWSRGQAWAIYGFIMVHRYLQKPRFLD 255
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A1L9AYY9_9DELT (Glucuronyl hydrolase n=2 Tax=Cystobacter ferrugineus TaxID=83449 RepID=A0A1L9AYY9_9DELT) HSP 1 Score: 100 bits (249), Expect = 3.800e-23 Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
DIVR D STYHV DYDPDTG + +GT+QGYSD+STW+RG AW IYG+ M+YRY ++PR LE ++
Sbjct: 214 DIVRPDGSTYHVVDYDPDTGAQLFRGTFQGYSDTSTWARGHAWVIYGFTMVYRYTRDPRMLEAAQ 278
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A1H7MJP1_STIAU (Unsaturated chondroitin disaccharide hydrolase n=3 Tax=Stigmatella TaxID=40 RepID=A0A1H7MJP1_STIAU) HSP 1 Score: 99.0 bits (245), Expect = 1.460e-22 Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
D+VR D ST+HVADYD +TG L QGTYQGYS++STW+RGQAWA+YGY ++YRY ++PR LE ++
Sbjct: 214 DLVRADGSTFHVADYDRNTGALRFQGTYQGYSNTSTWTRGQAWAVYGYTLLYRYTRDPRMLEAAQ 278
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: S9P5G6_9DELT (Alpha-1,2-mannosidase n=4 Tax=Cystobacter fuscus TaxID=43 RepID=S9P5G6_9DELT) HSP 1 Score: 97.8 bits (242), Expect = 3.720e-22 Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
D+VR D STYHV DYDPDTG +GTYQGYSD+STW+RG AW++YG+ ++YRY ++PR LE ++
Sbjct: 214 DLVRPDGSTYHVVDYDPDTGARRFRGTYQGYSDTSTWARGHAWSLYGFTLLYRYTRDPRMLETAQ 278
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: Q096Y7_STIAD (Unsaturated glucuronyl hydrolase n=3 Tax=Stigmatella aurantiaca TaxID=41 RepID=Q096Y7_STIAD) HSP 1 Score: 96.7 bits (239), Expect = 9.490e-22 Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query: 1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
D+VR D ST+HVADY +TG L QGTYQGYS++STW+RGQAWA+YGY ++YRY ++PR LE ++
Sbjct: 214 DLVRPDGSTFHVADYARNTGALRFQGTYQGYSNASTWTRGQAWAVYGYTLVYRYTRDPRMLEAAQ 278
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A1R4KRA6_9SPHI (Glucuronyl hydrolase n=1 Tax=Sphingobacterium sp. JB170 TaxID=1434842 RepID=A0A1R4KRA6_9SPHI) HSP 1 Score: 95.5 bits (236), Expect = 1.160e-21 Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1
Query: 10 RDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
RDD S+YHV DYDP +GD++++ T+QGYSD S W+RGQAWA+YGYVM YRY K R+L++++
Sbjct: 217 RDDYSSYHVVDYDPQSGDIIKKTTHQGYSDDSAWARGQAWALYGYVMCYRYTKHSRYLQQAE 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig205005.5844.1 >prot_H-elongata_contig205005.5844.1 ID=prot_H-elongata_contig205005.5844.1|Name=mRNA_H-elongata_contig205005.5844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMback to top mRNA from alignment at H-elongata_contig205005:273..1072- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig205005.5844.1 ID=mRNA_H-elongata_contig205005.5844.1|Name=mRNA_H-elongata_contig205005.5844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=800bp|location=Sequence derived from alignment at H-elongata_contig205005:273..1072- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig205005:273..1072- >mRNA_H-elongata_contig205005.5844.1 ID=mRNA_H-elongata_contig205005.5844.1|Name=mRNA_H-elongata_contig205005.5844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig205005:273..1072- (Himanthalia elongata Himel1 dioecious)back to top |