mRNA_H-elongata_contig205005.5844.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205005.5844.1
Unique NamemRNA_H-elongata_contig205005.5844.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 3.580e-27
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLE 186
            D+VRDD STYHVADYDP TG+LV++GTYQG+ D STWSRGQAWAIYG+ M+YRYLKE RFL+
Sbjct:  136 DLVRDDYSTYHVADYDPSTGELVDKGTYQGWQDDSTWSRGQAWAIYGFTMVYRYLKEQRFLD 197          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: D8LHN8_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN8_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 4.930e-27
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSKACLK 207
            DIVR+DNST HVA YD DTG+ +E GTYQGY++SSTW+RGQAWAIYGY M+YR+L E RFL+RS   LK
Sbjct:  223 DIVREDNSTNHVAAYDIDTGEFIETGTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLK 291          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.600e-26
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSKACL 204
            D+VR+D STYHVADYDP TGDL ++GTYQG+ D STWSRGQAWA+YG+ M++RYLK+ RFL+RS   L
Sbjct:  136 DLVREDYSTYHVADYDPSTGDLEDKGTYQGWQDDSTWSRGQAWAVYGFAMVHRYLKDERFLDRSILTL 203          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.280e-26
Identity = 49/69 (71.01%), Postives = 59/69 (85.51%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSKACLK 207
            DIVR+DNST HVA YD DTG+L+E GTYQGY++SSTW+RGQAWAIYGY M+YR+L E RFL+RS   L+
Sbjct:  260 DIVREDNSTNHVAAYDIDTGELIETGTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLE 328          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.740e-24
Identity = 43/62 (69.35%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLE 186
            D+VRDD ST+HVADY+  TG+LV++GTYQG+ D STWSRGQAWAIYG++M++RYL++PRFL+
Sbjct:  194 DLVRDDYSTFHVADYNKSTGELVDKGTYQGWQDDSTWSRGQAWAIYGFIMVHRYLQKPRFLD 255          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A1L9AYY9_9DELT (Glucuronyl hydrolase n=2 Tax=Cystobacter ferrugineus TaxID=83449 RepID=A0A1L9AYY9_9DELT)

HSP 1 Score: 100 bits (249), Expect = 3.800e-23
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
            DIVR D STYHV DYDPDTG  + +GT+QGYSD+STW+RG AW IYG+ M+YRY ++PR LE ++
Sbjct:  214 DIVRPDGSTYHVVDYDPDTGAQLFRGTFQGYSDTSTWARGHAWVIYGFTMVYRYTRDPRMLEAAQ 278          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A1H7MJP1_STIAU (Unsaturated chondroitin disaccharide hydrolase n=3 Tax=Stigmatella TaxID=40 RepID=A0A1H7MJP1_STIAU)

HSP 1 Score: 99.0 bits (245), Expect = 1.460e-22
Identity = 42/65 (64.62%), Postives = 55/65 (84.62%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
            D+VR D ST+HVADYD +TG L  QGTYQGYS++STW+RGQAWA+YGY ++YRY ++PR LE ++
Sbjct:  214 DLVRADGSTFHVADYDRNTGALRFQGTYQGYSNTSTWTRGQAWAVYGYTLLYRYTRDPRMLEAAQ 278          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: S9P5G6_9DELT (Alpha-1,2-mannosidase n=4 Tax=Cystobacter fuscus TaxID=43 RepID=S9P5G6_9DELT)

HSP 1 Score: 97.8 bits (242), Expect = 3.720e-22
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
            D+VR D STYHV DYDPDTG    +GTYQGYSD+STW+RG AW++YG+ ++YRY ++PR LE ++
Sbjct:  214 DLVRPDGSTYHVVDYDPDTGARRFRGTYQGYSDTSTWARGHAWSLYGFTLLYRYTRDPRMLETAQ 278          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: Q096Y7_STIAD (Unsaturated glucuronyl hydrolase n=3 Tax=Stigmatella aurantiaca TaxID=41 RepID=Q096Y7_STIAD)

HSP 1 Score: 96.7 bits (239), Expect = 9.490e-22
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 1
Query:    1 DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
            D+VR D ST+HVADY  +TG L  QGTYQGYS++STW+RGQAWA+YGY ++YRY ++PR LE ++
Sbjct:  214 DLVRPDGSTFHVADYARNTGALRFQGTYQGYSNASTWTRGQAWAVYGYTLVYRYTRDPRMLEAAQ 278          
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Match: A0A1R4KRA6_9SPHI (Glucuronyl hydrolase n=1 Tax=Sphingobacterium sp. JB170 TaxID=1434842 RepID=A0A1R4KRA6_9SPHI)

HSP 1 Score: 95.5 bits (236), Expect = 1.160e-21
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   10 RDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVMIYRYLKEPRFLERSK 195
            RDD S+YHV DYDP +GD++++ T+QGYSD S W+RGQAWA+YGYVM YRY K  R+L++++
Sbjct:  217 RDDYSSYHVVDYDPQSGDIIKKTTHQGYSDDSAWARGQAWALYGYVMCYRYTKHSRYLQQAE 278          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205005.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV0_9PHAE3.580e-2777.42GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LHN8_ECTSI4.930e-2771.01Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FQV4_ECTSI1.600e-2669.12Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5KCI0_9PHAE3.280e-2671.01GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FUJ9_ECTSI1.740e-2469.35Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
A0A1L9AYY9_9DELT3.800e-2364.62Glucuronyl hydrolase n=2 Tax=Cystobacter ferrugine... [more]
A0A1H7MJP1_STIAU1.460e-2264.62Unsaturated chondroitin disaccharide hydrolase n=3... [more]
S9P5G6_9DELT3.720e-2261.54Alpha-1,2-mannosidase n=4 Tax=Cystobacter fuscus T... [more]
Q096Y7_STIAD9.490e-2263.08Unsaturated glucuronyl hydrolase n=3 Tax=Stigmatel... [more]
A0A1R4KRA6_9SPHI1.160e-2161.29Glucuronyl hydrolase n=1 Tax=Sphingobacterium sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205005contigH-elongata_contig205005:273..1072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.1e-22
Seed eggNOG ortholog2880.D7FUK0
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.2407198-CDS-H-elongata_contig205005:272..4061622930149.2407198-CDS-H-elongata_contig205005:272..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205005 273..406 -
1691679299.7879262-CDS-H-elongata_contig205005:272..4061691679299.7879262-CDS-H-elongata_contig205005:272..406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205005 273..406 -
1622930149.2559922-CDS-H-elongata_contig205005:996..10721622930149.2559922-CDS-H-elongata_contig205005:996..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205005 997..1072 -
1691679299.8062189-CDS-H-elongata_contig205005:996..10721691679299.8062189-CDS-H-elongata_contig205005:996..1072Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205005 997..1072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205005.5844.1prot_H-elongata_contig205005.5844.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205005 273..1072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205005.5844.1

>prot_H-elongata_contig205005.5844.1 ID=prot_H-elongata_contig205005.5844.1|Name=mRNA_H-elongata_contig205005.5844.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
DIVRDDNSTYHVADYDPDTGDLVEQGTYQGYSDSSTWSRGQAWAIYGYVM
IYRYLKEPRFLERSKACLK*
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mRNA from alignment at H-elongata_contig205005:273..1072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205005.5844.1 ID=mRNA_H-elongata_contig205005.5844.1|Name=mRNA_H-elongata_contig205005.5844.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=800bp|location=Sequence derived from alignment at H-elongata_contig205005:273..1072- (Himanthalia elongata Himel1 dioecious)
GACATTGTCCGCGACGACAACAGCACATACCACGTAGCGGACTACGATCC CGACACGGGAGATCTCGTGGAACAAGGTACGCGCGGCAAACCTTCGTCTT TCGCGTTTCCTAGCTTAAAAGCCGTTTCAACCACGAACTAAACCGCACGG CGGTCCACAAAACCAAAACCAAAATGTTACGCGTGCGAGGTGCGGGGTCG ATTTGGTGGTACGAATCCCGACCGAAATAATTCGCCAACTTTTTCAACAT TTTCTGATCCGTTAACCAAGCGAACCCTTTGACTTACTTTAACCTTTTAT GCGACGTTTATTAGGGGTACCGTGCGAGTCAATCGATCCCAGACATACCC ACTACAGCACCACACGCGGTTCTCAGTCCGATGTGTGATCTGCAGGACAT AGAAAAGACATAAGGGTAAAATTATAGCAAACAAAGAACTAAAACTAACC AAAAAGTATCAAAATAGAAAAGAAAATGTCAATTACAAAACGTATAAACA TAAAAGCAAAAAGGGTGAACCACGTTAAAGCAGAGACGTTGCCTCAAATA AAGTCATGGTTGCATCCGATACACGGGTAACTTGATACGCTACTTTGCGG CGGAAAGGGTCTCAAACGCGCTCGTTTCTCGTTGTGTGTGTGTGTGTACA TTTTGACCTCTTCCAGGCACGTACCAAGGTTACTCCGACTCGTCTACCTG GAGCAGGGGACAGGCGTGGGCCATTTACGGATACGTTATGATCTACCGCT ACCTCAAGGAGCCTAGGTTCCTCGAGCGATCCAAGGCCTGCCTCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig205005:273..1072-

>mRNA_H-elongata_contig205005.5844.1 ID=mRNA_H-elongata_contig205005.5844.1|Name=mRNA_H-elongata_contig205005.5844.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig205005:273..1072- (Himanthalia elongata Himel1 dioecious)
GACATTGTCCGCGACGACAACAGCACATACCACGTAGCGGACTACGATCC
CGACACGGGAGATCTCGTGGAACAAGGACATTGTCCGCGACGACAACAGC
ACATACCACGTAGCGGACTACGATCCCGACACGGGAGATCTCGTGGAACA
AGGCACGTACCAAGGTTACTCCGACTCGTCTACCTGGAGCAGGGGACAGG
CGTGGGCCATTTACGGATACGTTATGATCTACCGCTACCTCAAGGAGCCT
AGGTTCCTCGAGCGATCCAAGGCCTGCCTCAAGTGAGCACGTACCAAGGT
TACTCCGACTCGTCTACCTGGAGCAGGGGACAGGCGTGGGCCATTTACGG
ATACGTTATGATCTACCGCTACCTCAAGGAGCCTAGGTTCCTCGAGCGAT
CCAAGGCCTGCCTCAAGTGA
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