mRNA_H-elongata_contig20499.5843.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20499.5843.1
Unique NamemRNA_H-elongata_contig20499.5843.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20499.5843.1 vs. uniprot
Match: D7FHV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.430e-26
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 HNNFSDSVFLAPRIMRKMKNGGNMDFVAFIDQVSRLSLCALELFLRKRTEGVHLDRSQPLSNDLSSALIGADLVAVFPEARVRRGCAGGILPS 279
            H NFSDS   AP  +RK++  G++D V FIDQV+RL+LCALE+FLR+RT      ++ P   DL S ++G DL   FPEARV+R CAGG++PS
Sbjct:    6 HTNFSDSPLFAPGPLRKLQGAGDIDCVIFIDQVTRLALCALEIFLRRRTSSGDAAKT-PAPGDLGSVVLGEDLAVAFPEARVKRVCAGGVMPS 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20499.5843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHV7_ECTSI1.430e-2653.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20499contigH-elongata_contig20499:2908..3517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_000590.1
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.1676264-CDS-H-elongata_contig20499:2907..30031622930149.1676264-CDS-H-elongata_contig20499:2907..3003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20499 2908..3003 +
1691679299.7683928-CDS-H-elongata_contig20499:2907..30031691679299.7683928-CDS-H-elongata_contig20499:2907..3003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20499 2908..3003 +
1622930149.1880817-CDS-H-elongata_contig20499:3316..35171622930149.1880817-CDS-H-elongata_contig20499:3316..3517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20499 3317..3517 +
1691679299.7779765-CDS-H-elongata_contig20499:3316..35171691679299.7779765-CDS-H-elongata_contig20499:3316..3517Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20499 3317..3517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20499.5843.1prot_H-elongata_contig20499.5843.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20499 2908..3517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20499.5843.1

>prot_H-elongata_contig20499.5843.1 ID=prot_H-elongata_contig20499.5843.1|Name=mRNA_H-elongata_contig20499.5843.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
HNNFSDSVFLAPRIMRKMKNGGNMDFVAFIDQVSRLSLCALELFLRKRTE
GVHLDRSQPLSNDLSSALIGADLVAVFPEARVRRGCAGGILPSTEMST*
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mRNA from alignment at H-elongata_contig20499:2908..3517+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20499.5843.1 ID=mRNA_H-elongata_contig20499.5843.1|Name=mRNA_H-elongata_contig20499.5843.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=610bp|location=Sequence derived from alignment at H-elongata_contig20499:2908..3517+ (Himanthalia elongata Himel1 dioecious)
CACAACAACTTCTCCGACAGCGTTTTCCTTGCCCCGCGCATCATGCGAAA
GATGAAGAACGGTGGGAATATGGACTTCGTTGCATTTATCGACCAGGTGG
GGACGCTAAACCTTGATATAGGGCGAGACAAATGTCTCCGAAACAATAAG
TAATATGCTTGGAGGACCTACCCCTTTACTTCGCCCCCAAAAATGAGGTC
TGAATCGACGTTGCGTTGAATGTCATTTCGAGATGGTGTACGACACAGGA
ATCATAAGAAATTGATGCTGTGGAGCGAGAGGTTCTATTCCGCCGCGCGA
TGTCGGCAAAGTGACTGCTTCGCACTAGCGTAGCCACTATTATTGCGCGG
TGTATCATGTGTCTCATGTAGAATGGCTGTATCTTGTCCATCCTGTGCAT
GTATCTCAGGTATCGCGGCTGTCTCTTTGCGCTCTGGAATTATTCCTTCG
GAAACGGACGGAAGGTGTACATCTTGACCGATCCCAACCTCTTTCCAACG
ATCTGTCTTCGGCGCTAATCGGGGCGGATCTTGTCGCCGTATTTCCCGAG
GCCAGGGTGAGGCGTGGCTGTGCCGGCGGTATACTTCCCTCCACAGAAAT
GTCTACATGA
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Coding sequence (CDS) from alignment at H-elongata_contig20499:2908..3517+

>mRNA_H-elongata_contig20499.5843.1 ID=mRNA_H-elongata_contig20499.5843.1|Name=mRNA_H-elongata_contig20499.5843.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig20499:2908..3517+ (Himanthalia elongata Himel1 dioecious)
CACAACAACTTCTCCGACAGCGTTTTCCTTGCCCCGCGCATCATGCGAAA
GATGAAGAACGGTGGGAATATGGACTTCGTTGCATTTATCGACCAGCACA
ACAACTTCTCCGACAGCGTTTTCCTTGCCCCGCGCATCATGCGAAAGATG
AAGAACGGTGGGAATATGGACTTCGTTGCATTTATCGACCAGGTATCGCG
GCTGTCTCTTTGCGCTCTGGAATTATTCCTTCGGAAACGGACGGAAGGTG
TACATCTTGACCGATCCCAACCTCTTTCCAACGATCTGTCTTCGGCGCTA
ATCGGGGCGGATCTTGTCGCCGTATTTCCCGAGGCCAGGGTGAGGCGTGG
CTGTGCCGGCGGTATACTTCCCTCCACAGAAATGTCTACATGAGTATCGC
GGCTGTCTCTTTGCGCTCTGGAATTATTCCTTCGGAAACGGACGGAAGGT
GTACATCTTGACCGATCCCAACCTCTTTCCAACGATCTGTCTTCGGCGCT
AATCGGGGCGGATCTTGTCGCCGTATTTCCCGAGGCCAGGGTGAGGCGTG
GCTGTGCCGGCGGTATACTTCCCTCCACAGAAATGTCTACATGA
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