mRNA_H-elongata_contig204951.5842.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204951.5842.1
Unique NamemRNA_H-elongata_contig204951.5842.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204951.5842.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 9.920e-7
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    7 MNITKENFEECFSTIRKAIKASHFIAVDAEFTGI 108
            MNITKENFE+ F  I +AI++SHFIA+D EFTG+
Sbjct:    1 MNITKENFEQSFDVICEAIRSSHFIALDTEFTGL 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204951.5842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN0_ECTSI9.920e-767.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204951contigH-elongata_contig204951:355..474 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size114
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.105464-UTR-H-elongata_contig204951:354..3601622930149.105464-UTR-H-elongata_contig204951:354..360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig204951 355..360 +
1691679299.750193-UTR-H-elongata_contig204951:354..3601691679299.750193-UTR-H-elongata_contig204951:354..360Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig204951 355..360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.1224432-CDS-H-elongata_contig204951:360..4741622930149.1224432-CDS-H-elongata_contig204951:360..474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204951 361..474 +
1691679299.7584195-CDS-H-elongata_contig204951:360..4741691679299.7584195-CDS-H-elongata_contig204951:360..474Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204951 361..474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204951.5842.1prot_H-elongata_contig204951.5842.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204951 361..474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204951.5842.1

>prot_H-elongata_contig204951.5842.1 ID=prot_H-elongata_contig204951.5842.1|Name=mRNA_H-elongata_contig204951.5842.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MNITKENFEECFSTIRKAIKASHFIAVDAEFTGINRR*
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mRNA from alignment at H-elongata_contig204951:355..474+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204951.5842.1 ID=mRNA_H-elongata_contig204951.5842.1|Name=mRNA_H-elongata_contig204951.5842.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig204951:355..474+ (Himanthalia elongata Himel1 dioecious)
AGCGTAATGAATATCACCAAGGAGAATTTTGAAGAATGTTTCAGCACCAT
ACGCAAGGCTATTAAGGCTTCGCATTTTATTGCAGTGGACGCTGAGTTCA
CAGGTATCAATCGTCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig204951:355..474+

>mRNA_H-elongata_contig204951.5842.1 ID=mRNA_H-elongata_contig204951.5842.1|Name=mRNA_H-elongata_contig204951.5842.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig204951:355..474+ (Himanthalia elongata Himel1 dioecious)
ATGAATATCACCAAGGAGAATTTTGAAGAATGTTTCAGCACCATACGCAA
GGCTATTAAGGCTTCGCATTTTATTGCAGTGGACGCTGAGTTCACAGGTA
TCAATCGTCGATGAATGAATATCACCAAGGAGAATTTTGAAGAATGTTTC
AGCACCATACGCAAGGCTATTAAGGCTTCGCATTTTATTGCAGTGGACGC
TGAGTTCACAGGTATCAATCGTCGATGA
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