mRNA_H-elongata_contig204926.5839.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204926.5839.1
Unique NamemRNA_H-elongata_contig204926.5839.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204926.5839.1 vs. uniprot
Match: A0A6H5K1U5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1U5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.330e-12
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 QVNISHEDREAVLAALEGRPGAQAIGSGLFDDALIQV 111
            QVNISHEDRE VLAALE RPGAQA+G+GLFD+ALIQV
Sbjct:  486 QVNISHEDREDVLAALENRPGAQAVGAGLFDEALIQV 522
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BLAST of mRNA_H-elongata_contig204926.5839.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 3.190e-12
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 QVNISHEDREAVLAALEGRPGAQAIGSGLFDDALIQV 111
            QVNISHEDRE VLAALE RPGAQA+G+GLFD+AL+QV
Sbjct:  495 QVNISHEDREDVLAALENRPGAQAVGAGLFDEALVQV 531
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204926.5839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1U5_9PHAE2.330e-1286.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3H0_ECTSI3.190e-1283.78Globin, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204926contigH-elongata_contig204926:239..349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog2880.D7G3H0
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
EggNOG free text desc.positive regulation of GTPase activity
EggNOG OGsKOG3589@1,KOG3589@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.8810499-CDS-H-elongata_contig204926:238..3491622930148.8810499-CDS-H-elongata_contig204926:238..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204926 239..349 -
1691679299.6573906-CDS-H-elongata_contig204926:238..3491691679299.6573906-CDS-H-elongata_contig204926:238..349Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204926 239..349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204926.5839.1prot_H-elongata_contig204926.5839.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204926 239..349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204926.5839.1

>prot_H-elongata_contig204926.5839.1 ID=prot_H-elongata_contig204926.5839.1|Name=mRNA_H-elongata_contig204926.5839.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
QVNISHEDREAVLAALEGRPGAQAIGSGLFDDALIQV
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mRNA from alignment at H-elongata_contig204926:239..349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204926.5839.1 ID=mRNA_H-elongata_contig204926.5839.1|Name=mRNA_H-elongata_contig204926.5839.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig204926:239..349- (Himanthalia elongata Himel1 dioecious)
CAGGTGAATATATCCCACGAGGACCGCGAGGCGGTGCTGGCGGCTCTCGA
AGGAAGACCCGGCGCGCAGGCCATCGGCTCGGGGCTCTTCGATGACGCTC
TCATTCAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig204926:239..349-

>mRNA_H-elongata_contig204926.5839.1 ID=mRNA_H-elongata_contig204926.5839.1|Name=mRNA_H-elongata_contig204926.5839.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig204926:239..349- (Himanthalia elongata Himel1 dioecious)
CAGGTGAATATATCCCACGAGGACCGCGAGGCGGTGCTGGCGGCTCTCGA
AGGAAGACCCGGCGCGCAGGCCATCGGCTCGGGGCTCTTCGATGACGCTC
TCATTCAGGTTCAGGTGAATATATCCCACGAGGACCGCGAGGCGGTGCTG
GCGGCTCTCGAAGGAAGACCCGGCGCGCAGGCCATCGGCTCGGGGCTCTT
CGATGACGCTCTCATTCAGGTT
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