mRNA_H-elongata_contig20475.5832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20475.5832.1
Unique NamemRNA_H-elongata_contig20475.5832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20475.5832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20475contigH-elongata_contig20475:645..2118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog115417.EPrPW00000018983
EggNOG free text desc.Chromosome 14 open reading frame 106. Source PGD
EggNOG OGs1MFCY@121069,2CXA2@1,2RWRQ@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1474
Cds size1035
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20475.5832.1prot_H-elongata_contig20475.5832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20475 978..2012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.2458303-UTR-H-elongata_contig20475:644..9771622930148.2458303-UTR-H-elongata_contig20475:644..977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20475 645..977 +
1691679299.4084451-UTR-H-elongata_contig20475:644..9771691679299.4084451-UTR-H-elongata_contig20475:644..977Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20475 645..977 +
1622930148.276692-UTR-H-elongata_contig20475:2012..21181622930148.276692-UTR-H-elongata_contig20475:2012..2118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20475 2013..2118 +
1691679299.4270957-UTR-H-elongata_contig20475:2012..21181691679299.4270957-UTR-H-elongata_contig20475:2012..2118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20475 2013..2118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930148.260995-CDS-H-elongata_contig20475:977..20121622930148.260995-CDS-H-elongata_contig20475:977..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20475 978..2012 +
1691679299.4188004-CDS-H-elongata_contig20475:977..20121691679299.4188004-CDS-H-elongata_contig20475:977..2012Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20475 978..2012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20475.5832.1

>prot_H-elongata_contig20475.5832.1 ID=prot_H-elongata_contig20475.5832.1|Name=mRNA_H-elongata_contig20475.5832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=345bp
MAAENRPGAPCPFSVSGDECDSGSGPRKMRLQPPVLDWWRSQRLGPTADV
NTGVSTAPVPRNNGMRLGVAAVSAPGRSESLVSGERNSGDHDTPWTPAQL
RSLRAAQTGTVPSKDDFWVVVAGKVEGRDARQCQQKWFETFCTPGRSGKR
KAVRRDSNEQRKTTPLAEESSKYSQQSQELRSPPPANEAKSGADDLFHAT
PLRGRNRFAGQSHGDDLGLVGRGTPKTPLGPRAPSTNITIGRASSINKND
NTSSVQRRGVSRAYVQTMSKKMRKMTGVLKLGNPLEETTTLGVARRRIHA
VVNAQGHALKMSVSESGAVKTSVDGDDDGDEIGMSGDSDFSDDE*
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mRNA from alignment at H-elongata_contig20475:645..2118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20475.5832.1 ID=mRNA_H-elongata_contig20475.5832.1|Name=mRNA_H-elongata_contig20475.5832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1474bp|location=Sequence derived from alignment at H-elongata_contig20475:645..2118+ (Himanthalia elongata Himel1 dioecious)
CGTACAACACTCGTCAACAACCAACAACATCCAGTGTGTCGGCAATACTC
CTGTGAGTAAATTTCCATTTCTCGATAATGTGAACTTGGTAAATTATGTC
AAGGTCAATGGGTCAAACCGAATTCCTGGTGCTGGTGACAGTCCTGTAAG
TGGATAACACCGAGATTATTTTTGGACAAACTAGAGCCATCTCGCAGAGC
CATGTACATGATTCTCTGAGAAAATTGCCCTTAACCAGCGAGCCCCGGCA
GCAATTTGAATATCCTACTTGCTAACTCGTTTGCTATACATTTCCAACGT
CGCATTAAGGTACTGTATGGTTGTTGTGAAGACATGGCAGCCGAGAACCG
TCCAGGTGCACCGTGTCCATTTTCTGTTTCTGGCGACGAGTGCGATTCTG
GGAGTGGTCCAAGAAAAATGCGTCTACAACCGCCTGTGCTGGACTGGTGG
CGGAGCCAACGTTTGGGCCCCACGGCTGATGTAAACACGGGAGTGAGTAC
CGCACCAGTTCCAAGAAATAACGGGATGAGACTGGGAGTTGCAGCCGTTT
CTGCACCAGGAAGGTCGGAGAGCTTAGTATCGGGTGAACGTAATTCTGGA
GACCACGATACACCATGGACCCCGGCCCAACTCCGAAGTCTTCGTGCGGC
ACAGACGGGCACGGTTCCTTCAAAGGATGATTTTTGGGTTGTTGTCGCCG
GCAAAGTGGAGGGAAGAGATGCGCGACAGTGTCAACAGAAATGGTTTGAG
ACATTCTGTACCCCTGGCAGAAGTGGCAAGAGGAAGGCAGTAAGAAGAGA
CTCGAATGAGCAAAGAAAGACCACACCTCTCGCAGAGGAATCGTCAAAAT
ACTCTCAGCAATCTCAAGAGTTGCGCTCTCCACCGCCGGCGAACGAAGCG
AAATCCGGCGCAGATGATTTATTTCACGCAACTCCACTGCGCGGACGGAA
TCGATTTGCAGGGCAGTCTCACGGCGATGACCTAGGTCTAGTGGGACGTG
GGACTCCTAAGACACCCCTTGGGCCTAGAGCACCATCTACCAATATTACT
ATAGGGCGAGCAAGTTCTATAAATAAGAATGATAACACCAGCAGTGTACA
AAGGCGAGGCGTGAGTAGGGCATATGTGCAAACGATGTCGAAAAAGATGC
GAAAGATGACTGGGGTATTGAAGTTGGGCAACCCTCTTGAGGAAACCACA
ACGTTGGGGGTTGCACGCCGCAGAATCCACGCTGTAGTTAATGCGCAAGG
TCATGCTCTGAAGATGTCCGTATCGGAGTCAGGGGCTGTCAAAACATCTG
TTGATGGGGATGACGATGGGGATGAGATAGGCATGTCTGGTGATTCTGAC
TTTAGCGACGATGAATGAAGTTTGAGCCGTTGTAGATGATACAACGTCCA
CGTGGAATTCTTAACGTGCCTCATTACTCCCTTTTTTTCCCTTTTCTTAT
TATGTTCATTATTGACACTTCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig20475:645..2118+

>mRNA_H-elongata_contig20475.5832.1 ID=mRNA_H-elongata_contig20475.5832.1|Name=mRNA_H-elongata_contig20475.5832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2070bp|location=Sequence derived from alignment at H-elongata_contig20475:645..2118+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCCGAGAACCGTCCAGGTGCACCGTGTCCATTTTCTGTTTCTGG
CGACGAGTGCGATTCTGGGAGTGGTCCAAGAAAAATGCGTCTACAACCGC
CTGTGCTGGACTGGTGGCGGAGCCAACGTTTGGGCCCCACGGCTGATGTA
AACACGGGAGTGAGTACCGCACCAGTTCCAAGAAATAACGGGATGAGACT
GGGAGTTGCAGCCGTTTCTGCACCAGGAAGGTCGGAGAGCTTAGTATCGG
GTGAACGTAATTCTGGAGACCACGATACACCATGGACCCCGGCCCAACTC
CGAAGTCTTCGTGCGGCACAGACGGGCACGGTTCCTTCAAAGGATGATTT
TTGGGTTGTTGTCGCCGGCAAAGTGGAGGGAAGAGATGCGCGACAGTGTC
AACAGAAATGGTTTGAGACATTCTGTACCCCTGGCAGAAGTGGCAAGAGG
AAGGCAGTAAGAAGAGACTCGAATGAGCAAAGAAAGACCACACCTCTCGC
AGAGGAATCGTCAAAATACTCTCAGCAATCTCAAGAGTTGCGCTCTCCAC
CGCCGGCGAACGAAGCGAAATCCGGCGCAGATGATTTATTTCACGCAACT
CCACTGCGCGGACGGAATCGATTTGCAGGGCAGTCTCACGGCGATGACCT
AGGTCTAGTGGGACGTGGGACTCCTAAGACACCCCTTGGGCCTAGAGCAC
CATCTACCAATATTACTATAGGGCGAGCAAGTTCTATAAATAAGAATGAT
AACACCAGCAGTGTACAAAGGCGAGGCGTGAGTAGGGCATATGTGCAAAC
GATGTCGAAAAAGATGCGAAAGATGACTGGGGTATTGAAGTTGGGCAACC
CTCTTGAGGAAACCACAACGTTGGGGGTTGCACGCCGCAGAATCCACGCT
GTAGTTAATGCGCAAGGTCATGCTCTGAAGATGTCCGTATCGGAGTCAGG
GGCTGTCAAAACATCTGTTGATGGGGATGACGATGGGGATGAGATAGGCA
TGTCTGGTGATTCTGACTTTAGCGACGATGAATGAATGGCAGCCGAGAAC
CGTCCAGGTGCACCGTGTCCATTTTCTGTTTCTGGCGACGAGTGCGATTC
TGGGAGTGGTCCAAGAAAAATGCGTCTACAACCGCCTGTGCTGGACTGGT
GGCGGAGCCAACGTTTGGGCCCCACGGCTGATGTAAACACGGGAGTGAGT
ACCGCACCAGTTCCAAGAAATAACGGGATGAGACTGGGAGTTGCAGCCGT
TTCTGCACCAGGAAGGTCGGAGAGCTTAGTATCGGGTGAACGTAATTCTG
GAGACCACGATACACCATGGACCCCGGCCCAACTCCGAAGTCTTCGTGCG
GCACAGACGGGCACGGTTCCTTCAAAGGATGATTTTTGGGTTGTTGTCGC
CGGCAAAGTGGAGGGAAGAGATGCGCGACAGTGTCAACAGAAATGGTTTG
AGACATTCTGTACCCCTGGCAGAAGTGGCAAGAGGAAGGCAGTAAGAAGA
GACTCGAATGAGCAAAGAAAGACCACACCTCTCGCAGAGGAATCGTCAAA
ATACTCTCAGCAATCTCAAGAGTTGCGCTCTCCACCGCCGGCGAACGAAG
CGAAATCCGGCGCAGATGATTTATTTCACGCAACTCCACTGCGCGGACGG
AATCGATTTGCAGGGCAGTCTCACGGCGATGACCTAGGTCTAGTGGGACG
TGGGACTCCTAAGACACCCCTTGGGCCTAGAGCACCATCTACCAATATTA
CTATAGGGCGAGCAAGTTCTATAAATAAGAATGATAACACCAGCAGTGTA
CAAAGGCGAGGCGTGAGTAGGGCATATGTGCAAACGATGTCGAAAAAGAT
GCGAAAGATGACTGGGGTATTGAAGTTGGGCAACCCTCTTGAGGAAACCA
CAACGTTGGGGGTTGCACGCCGCAGAATCCACGCTGTAGTTAATGCGCAA
GGTCATGCTCTGAAGATGTCCGTATCGGAGTCAGGGGCTGTCAAAACATC
TGTTGATGGGGATGACGATGGGGATGAGATAGGCATGTCTGGTGATTCTG
ACTTTAGCGACGATGAATGA
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