mRNA_H-elongata_contig204660.5828.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204660.5828.1
Unique NamemRNA_H-elongata_contig204660.5828.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204660.5828.1 vs. uniprot
Match: D8LU00_ECTSI (Similar to putative alpha-6-fucosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU00_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.290e-22
Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 1 
Query:    1 YLEKAKSYIENLAEAKLSVEDIKGIWVSDDDKNVISEVKEICFEFFPYVEMERVVWISGRESKNLSSTDLVPTRAHNMNYEAYVLFFAERTMLAQGDVFVGTFSSNVARMIMLLREMNGLPRSSCLSVDHPTWSPGR 411
            YL KA +Y+ +     ++  +I GIWVS DD+ V  EVK++  EFFP +    V++++G +        L+   A   +YEA V   AE  MLA   VF GTFSSNV RM+ L+R+   +P  S +SVD P W  GR
Sbjct:   28 YLAKAVNYLASPTN-DMAATNITGIWVSSDDEAVFDEVKQLASEFFPGIAPNAVLYVTGGKP-----VQLMRGAADRNSYEAMVYLRAELEMLAGSAVFSGTFSSNVGRMVALMRKTLNMPDESAVSVDFPAWFAGR 158
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BLAST of mRNA_H-elongata_contig204660.5828.1 vs. uniprot
Match: A0A6H5LR29_9PHAE (GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LR29_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.930e-21
Identity = 52/130 (40.00%), Postives = 80/130 (61.54%), Query Frame = 1 
Query:    1 YLEKAKSYIENLAEAKLSVEDIKGIWVSDDDKNVISEVKEICFEFFPYVEMERVVWISGRESKNLSSTDLVPTRAHNMNYEAYVLFFAERTMLAQGDVFVGTFSSNVARMIMLLRE-MNGLPRSSCLSVD 387
            YL  A  + +N  +A    +DI+ IWV+ DD  V+ EV+ I  ++FP V  E +VW+SG      +    V T   +  Y+ +V+ FA+  MLA G +FVGT++SNV+R++ LLRE ++G  R SC+S+D
Sbjct:  162 YLSAAARFFDN--KASQDKQDIEAIWVASDDHKVVEEVRAIARQYFPNVLDEDIVWVSGG-----ARGGAVTTHTKSQGYQGFVMVFADLKMLAAGSLFVGTYTSNVSRLVALLREGIHGHARDSCISLD 284
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BLAST of mRNA_H-elongata_contig204660.5828.1 vs. uniprot
Match: A0A6H5JTL0_9PHAE (GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTL0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.030e-20
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:    1 YLEKAKSYIENLAEAKLSVEDIKGIWVSDDDKNVISEVKEICFEFFPYVEMERVVWISGRESKNLSSTDLVPTRAHNMNYEAYVLFFAERTMLAQGDVFVGTFSSNVARMIMLLREMNGLP-RSSCLSVDHPTWSPGR 411
            YLE A  ++E   +++LSV DIKGIWV+ D+  VI++VK+I  ++ P V    + W SG         +   TR     Y  +V  FA+   L   D+FVGTFSSN+ R+++LLRE  GL  R+S +S+D P W  GR
Sbjct:  303 YLETAVEFLEG-NDSQLSVGDIKGIWVASDEPKVIAKVKQIAQDYLPNVSEGDIFWASGGVEGG-PEIERTATRTDQETYADFVYTFADLQQLTAADLFVGTFSSNIGRLLVLLRESIGLKDRASAVSIDGP-WRAGR 437
[Close]
BLAST of mRNA_H-elongata_contig204660.5828.1 vs. uniprot
Match: D7G435_ECTSI (Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G435_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.380e-19
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 1 
Query:    1 YLEKAKSYIENLAEAKLSVEDIKGIWVSDDDKNVISEVKEICFEFFPYVEMERVVWISGRESKNLSSTDLVPTRAHNMNYEAYVLFFAERTMLAQGDVFVGTFSSNVARMIMLLREMNGLP-RSSCLSVDHPTWSPGR 411
            YLE A  ++E   +++LSV DIKGIWV+ D+  VI++VK+I  ++ P V  + + W SG             TR     Y  +V   A+   L   D+FVGTFSSN+ R+++LLRE  GL  R+S +S+D P W  GR
Sbjct:  311 YLEAAVEFLEG-DDSQLSVGDIKGIWVASDEPKVIAKVKQIAPDYLPNVSEDDIFWASGGVEGG-PEIGRTATRTDKETYADFVYTLADLQQLTAADLFVGTFSSNMGRLLVLLRESIGLKDRASAVSIDGP-WRAGR 445
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204660.5828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LU00_ECTSI1.290e-2240.88Similar to putative alpha-6-fucosyltransferase n=1... [more]
A0A6H5LR29_9PHAE1.930e-2140.00GT23 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JTL0_9PHAE1.030e-2041.30GT23 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G435_ECTSI1.380e-1940.58Alpha-(1,6)-fucosyltransferase, family GT23 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204660contigH-elongata_contig204660:204..1013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue6e-20
Seed eggNOG ortholog2880.D7FJM3
KEGG koko:K00717
KEGG ReactionR05988,R09319
KEGG Pathwayko00510,ko00513,ko00533,ko01100,ko05202,map00510,map00513,map00533,map01100,map05202
KEGG ModuleM00075
EggNOG free text desc.glycoprotein 6-alpha-L-fucosyltransferase activity
EggNOG OGsKOG3705@1,KOG3705@2759
EC2.4.1.68
COG Functional cat.M
CAZyGT23
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons2
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.992639-CDS-H-elongata_contig204660:203..4011622930147.992639-CDS-H-elongata_contig204660:203..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204660 204..401 -
1691679299.3300586-CDS-H-elongata_contig204660:203..4011691679299.3300586-CDS-H-elongata_contig204660:203..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204660 204..401 -
1622930148.008876-CDS-H-elongata_contig204660:779..10131622930148.008876-CDS-H-elongata_contig204660:779..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204660 780..1013 -
1691679299.34614-CDS-H-elongata_contig204660:779..10131691679299.34614-CDS-H-elongata_contig204660:779..1013Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204660 780..1013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204660.5828.1prot_H-elongata_contig204660.5828.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204660 204..1013 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204660.5828.1

>prot_H-elongata_contig204660.5828.1 ID=prot_H-elongata_contig204660.5828.1|Name=mRNA_H-elongata_contig204660.5828.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
YLEKAKSYIENLAEAKLSVEDIKGIWVSDDDKNVISEVKEICFEFFPYVE
MERVVWISGRESKNLSSTDLVPTRAHNMNYEAYVLFFAERTMLAQGDVFV
GTFSSNVARMIMLLREMNGLPRSSCLSVDHPTWSPGRHFLATT*
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mRNA from alignment at H-elongata_contig204660:204..1013-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204660.5828.1 ID=mRNA_H-elongata_contig204660.5828.1|Name=mRNA_H-elongata_contig204660.5828.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at H-elongata_contig204660:204..1013- (Himanthalia elongata Himel1 dioecious)
TACTTGGAGAAGGCCAAATCATACATTGAAAACTTGGCGGAAGCAAAACT
ATCGGTCGAAGACATAAAAGGGATCTGGGTTTCCGACGACGACAAGAACG
TAATCTCGGAAGTCAAGGAAATATGTTTTGAGTTCTTCCCTTATGTCGAA
ATGGAGCGGGTTGTATGGATTTCCGGTCGGGAATCCAAGAACCTGTCTTC
TACCGACCTCGTTCCTACGAGAGCGCATAATATGGTAAGTGGAACTGCAA
GAAGGGTGGATAGTATATCTGGGAAATATTAATTTCGGAGGATTCAACGA
ACGCAGACTCGACCATTATGACTGAGTATCACTATAATATACGTCAACTA
CTTTCATATAAAGATTTTGTACTTGCTCATAGGTAGTAATCTATACACTC
GAACCTGACGATCGTTGCTTCCCTGGACTTCATTCACCATTCATGGTGTA
ATGAACGTGTGGATGTTCGGGGAGTTTCATCGAGCTAATAATATGCTTTT
AGTAAATATTCAATAAGGGTTCGGTAATTATTAACAAGCTTTCAGCTAGT
TAACTTTGAGAGTGCCCCTCAACGTTTCGTATTCTCGTGCTCTATATAAC
CAACCGCACAAGAATTACGAGGCATACGTGCTCTTCTTTGCGGAGCGGAC
AATGCTGGCTCAAGGGGACGTCTTCGTTGGCACCTTCTCTTCAAACGTTG
CACGGATGATTATGCTGCTACGCGAGATGAATGGCTTGCCAAGGAGTTCA
TGCTTGAGCGTGGACCACCCGACGTGGAGCCCCGGACGTCATTTTCTCGC
CACGACGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig204660:204..1013-

>mRNA_H-elongata_contig204660.5828.1 ID=mRNA_H-elongata_contig204660.5828.1|Name=mRNA_H-elongata_contig204660.5828.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig204660:204..1013- (Himanthalia elongata Himel1 dioecious)
TACTTGGAGAAGGCCAAATCATACATTGAAAACTTGGCGGAAGCAAAACT
ATCGGTCGAAGACATAAAAGGGATCTGGGTTTCCGACGACGACAAGAACG
TAATCTCGGAAGTCAAGGAAATATGTTTTGAGTTCTTCCCTTATGTCGAA
ATGGAGCGGGTTGTATGGATTTCCGGTCGGGAATCCAAGAACCTGTCTTC
TACCGACCTCGTTCCTACGAGAGCGCATAATATGTACTTGGAGAAGGCCA
AATCATACATTGAAAACTTGGCGGAAGCAAAACTATCGGTCGAAGACATA
AAAGGGATCTGGGTTTCCGACGACGACAAGAACGTAATCTCGGAAGTCAA
GGAAATATGTTTTGAGTTCTTCCCTTATGTCGAAATGGAGCGGGTTGTAT
GGATTTCCGGTCGGGAATCCAAGAACCTGTCTTCTACCGACCTCGTTCCT
ACGAGAGCGCATAATATGAATTACGAGGCATACGTGCTCTTCTTTGCGGA
GCGGACAATGCTGGCTCAAGGGGACGTCTTCGTTGGCACCTTCTCTTCAA
ACGTTGCACGGATGATTATGCTGCTACGCGAGATGAATGGCTTGCCAAGG
AGTTCATGCTTGAGCGTGGACCACCCGACGTGGAGCCCCGGACGTCATTT
TCTCGCCACGACGTAAAATTACGAGGCATACGTGCTCTTCTTTGCGGAGC
GGACAATGCTGGCTCAAGGGGACGTCTTCGTTGGCACCTTCTCTTCAAAC
GTTGCACGGATGATTATGCTGCTACGCGAGATGAATGGCTTGCCAAGGAG
TTCATGCTTGAGCGTGGACCACCCGACGTGGAGCCCCGGACGTCATTTTC
TCGCCACGACGTAA
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