mRNA_H-elongata_contig20464.5825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20464.5825.1
Unique NamemRNA_H-elongata_contig20464.5825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20464.5825.1 vs. uniprot
Match: D8LN60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN60_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.430e-15
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:    1 QAWWRAVCGGKRAAARLRSHGCDTIGKLYATC---ALGVTFTTNNEERKCIHAPVPSSRRRGGELRRWLGDQDLADKISSLLLRLALAIEKIR 270
            QAWWRAVCGGK AA RLR  GCDT+GKLY      A+G + ++++       A    +R R  +LRR + D DLA KI+SLL RL  A E++R
Sbjct:  984 QAWWRAVCGGKEAAKRLRDDGCDTVGKLYTYVRGSAVGCSSSSSSLAGCGDGAAPKKARSRTKKLRRLVNDDDLATKIASLLRRLMSAFEELR 1076
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20464.5825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN60_ECTSI1.430e-1549.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20464contigH-elongata_contig20464:738..1085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.7642734-CDS-H-elongata_contig20464:737..8691622930147.7642734-CDS-H-elongata_contig20464:737..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20464 738..869 +
1691679299.2525766-CDS-H-elongata_contig20464:737..8691691679299.2525766-CDS-H-elongata_contig20464:737..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20464 738..869 +
1622930147.7935176-CDS-H-elongata_contig20464:947..10851622930147.7935176-CDS-H-elongata_contig20464:947..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20464 948..1085 +
1691679299.275719-CDS-H-elongata_contig20464:947..10851691679299.275719-CDS-H-elongata_contig20464:947..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20464 948..1085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20464.5825.1prot_H-elongata_contig20464.5825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20464 738..1085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20464.5825.1

>prot_H-elongata_contig20464.5825.1 ID=prot_H-elongata_contig20464.5825.1|Name=mRNA_H-elongata_contig20464.5825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
QAWWRAVCGGKRAAARLRSHGCDTIGKLYATCALGVTFTTNNEERKCIHA
PVPSSRRRGGELRRWLGDQDLADKISSLLLRLALAIEKIR
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mRNA from alignment at H-elongata_contig20464:738..1085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20464.5825.1 ID=mRNA_H-elongata_contig20464.5825.1|Name=mRNA_H-elongata_contig20464.5825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig20464:738..1085+ (Himanthalia elongata Himel1 dioecious)
CAGGCCTGGTGGAGGGCGGTGTGTGGGGGCAAGCGAGCGGCGGCACGCCT
CAGGAGCCACGGCTGTGACACGATCGGTAAGCTGTATGCCACCTGCGCGC
TCGGCGTTACCTTCACAACAAATAACGAAGAGGTATCCTCCGAGACTCTT
CGCCCGCACCAGGGCAGTCGCGTCTTCGACCCGTCGCCGGGCGCACAAGG
GAGCGAGGAGAGGAAGTGCATCCATGCGCCAGTGCCCTCGAGCAGACGCA
GGGGAGGGGAGCTACGTCGATGGCTGGGCGACCAAGACCTCGCGGACAAG
ATTTCATCTTTGCTGCTGCGACTCGCGCTGGCAATCGAGAAAATACGG
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Coding sequence (CDS) from alignment at H-elongata_contig20464:738..1085+

>mRNA_H-elongata_contig20464.5825.1 ID=mRNA_H-elongata_contig20464.5825.1|Name=mRNA_H-elongata_contig20464.5825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig20464:738..1085+ (Himanthalia elongata Himel1 dioecious)
CAGGCCTGGTGGAGGGCGGTGTGTGGGGGCAAGCGAGCGGCGGCACGCCT
CAGGAGCCACGGCTGTGACACGATCGGTAAGCTGTATGCCACCTGCGCGC
TCGGCGTTACCTTCACAACAAATAACGAAGAGCAGGCCTGGTGGAGGGCG
GTGTGTGGGGGCAAGCGAGCGGCGGCACGCCTCAGGAGCCACGGCTGTGA
CACGATCGGTAAGCTGTATGCCACCTGCGCGCTCGGCGTTACCTTCACAA
CAAATAACGAAGAGAGGAAGTGCATCCATGCGCCAGTGCCCTCGAGCAGA
CGCAGGGGAGGGGAGCTACGTCGATGGCTGGGCGACCAAGACCTCGCGGA
CAAGATTTCATCTTTGCTGCTGCGACTCGCGCTGGCAATCGAGAAAATAC
GGAGGAAGTGCATCCATGCGCCAGTGCCCTCGAGCAGACGCAGGGGAGGG
GAGCTACGTCGATGGCTGGGCGACCAAGACCTCGCGGACAAGATTTCATC
TTTGCTGCTGCGACTCGCGCTGGCAATCGAGAAAATACGG
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