mRNA_H-elongata_contig204630.5824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204630.5824.1
Unique NamemRNA_H-elongata_contig204630.5824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204630.5824.1 vs. uniprot
Match: A0A6J2YVB7_SITOR (uncharacterized protein LOC115890636 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YVB7_SITOR)

HSP 1 Score: 51.6 bits (122), Expect = 2.190e-5
Identity = 32/122 (26.23%), Postives = 59/122 (48.36%), Query Frame = 1 
Query:    1 RTAHQAWVLLITTCKGVAFDIVQRAEPPGEAWSKLVQHYHASGLKERRRLTVDFYTMKMELGEYPRNFFLRMDQMVKELERVGRPVDLKDVDIVILSGLTPQYDTEVRMLESSSDWPTRDWI 366
            R   +A   +    K +A+  V+ A+   EAW  L + Y   GL  R  L      +++E       +      + ++L  + +PVD + + +++LSGLT +YD  V  +E+S+   T D++
Sbjct:   30 RCNEKALAKICLMIKPIAYTHVRLAKTAKEAWDNLQKAYEDQGLSRRLSLIRRLVRIRLENYSTMEAYVNETLSIAQKLADMAQPVDDEFLGVIMLSGLTSEYDPMVMAIENSNVKITSDFV 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204630.5824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6J2YVB7_SITOR2.190e-526.23uncharacterized protein LOC115890636 n=1 Tax=Sitop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204630contigH-elongata_contig204630:620..1006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.7074075-CDS-H-elongata_contig204630:619..10061622930147.7074075-CDS-H-elongata_contig204630:619..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204630 620..1006 +
1691679299.2444692-CDS-H-elongata_contig204630:619..10061691679299.2444692-CDS-H-elongata_contig204630:619..1006Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204630 620..1006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204630.5824.1prot_H-elongata_contig204630.5824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204630 620..1006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204630.5824.1

>prot_H-elongata_contig204630.5824.1 ID=prot_H-elongata_contig204630.5824.1|Name=mRNA_H-elongata_contig204630.5824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
RTAHQAWVLLITTCKGVAFDIVQRAEPPGEAWSKLVQHYHASGLKERRRL
TVDFYTMKMELGEYPRNFFLRMDQMVKELERVGRPVDLKDVDIVILSGLT
PQYDTEVRMLESSSDWPTRDWIERAVINQ
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mRNA from alignment at H-elongata_contig204630:620..1006+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204630.5824.1 ID=mRNA_H-elongata_contig204630.5824.1|Name=mRNA_H-elongata_contig204630.5824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig204630:620..1006+ (Himanthalia elongata Himel1 dioecious)
AGAACGGCGCATCAAGCTTGGGTATTGCTGATAACCACGTGCAAGGGAGT
AGCGTTCGACATCGTCCAAAGAGCTGAGCCGCCCGGGGAAGCGTGGTCAA
AGCTCGTGCAGCACTACCACGCCAGCGGCCTCAAGGAACGCCGCCGCCTC
ACTGTGGACTTCTATACGATGAAGATGGAACTCGGCGAGTATCCGCGCAA
TTTTTTTCTGCGGATGGACCAGATGGTCAAGGAACTGGAAAGGGTGGGGC
GACCGGTGGACCTAAAGGACGTGGACATCGTAATTCTCAGCGGCCTCACC
CCCCAGTACGACACCGAGGTTCGAATGCTGGAGAGCTCATCGGACTGGCC
CACTCGAGATTGGATAGAACGTGCCGTCATCAACCAG
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Coding sequence (CDS) from alignment at H-elongata_contig204630:620..1006+

>mRNA_H-elongata_contig204630.5824.1 ID=mRNA_H-elongata_contig204630.5824.1|Name=mRNA_H-elongata_contig204630.5824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig204630:620..1006+ (Himanthalia elongata Himel1 dioecious)
AGAACGGCGCATCAAGCTTGGGTATTGCTGATAACCACGTGCAAGGGAGT
AGCGTTCGACATCGTCCAAAGAGCTGAGCCGCCCGGGGAAGCGTGGTCAA
AGCTCGTGCAGCACTACCACGCCAGCGGCCTCAAGGAACGCCGCCGCCTC
ACTGTGGACTTCTATACGATGAAGATGGAACTCGGCGAGTATCCGCGCAA
TTTTTTTCTGCGGATGGACCAGATGGTCAAGGAACTGGAAAGGGTGGGGC
GACCGGTGGACCTAAAGGACGTGGACATCGTAATTCTCAGCGGCCTCACC
CCCCAGTACGACACCGAGGTTCGAATGCTGGAGAGCTCATCGGACTGGCC
CACTCGAGATTGGATAGAACGTGCCGTCATCAACCAGAGAACGGCGCATC
AAGCTTGGGTATTGCTGATAACCACGTGCAAGGGAGTAGCGTTCGACATC
GTCCAAAGAGCTGAGCCGCCCGGGGAAGCGTGGTCAAAGCTCGTGCAGCA
CTACCACGCCAGCGGCCTCAAGGAACGCCGCCGCCTCACTGTGGACTTCT
ATACGATGAAGATGGAACTCGGCGAGTATCCGCGCAATTTTTTTCTGCGG
ATGGACCAGATGGTCAAGGAACTGGAAAGGGTGGGGCGACCGGTGGACCT
AAAGGACGTGGACATCGTAATTCTCAGCGGCCTCACCCCCCAGTACGACA
CCGAGGTTCGAATGCTGGAGAGCTCATCGGACTGGCCCACTCGAGATTGG
ATAGAACGTGCCGTCATCAACCAG
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