mRNA_H-elongata_contig2046.5823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig2046.5823.1
Unique NamemRNA_H-elongata_contig2046.5823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig2046.5823.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 6.040e-5
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 2 
Query:    5 RRISIAIIIFNAIALVTIGFILWV-QWCGSLTGIIMASVLLCVFNKCCYISAAISFAIGGLFNLYAMIIWIRIAQAFND 238
            R  +I  II +  AL+  G+ LWV QW  S+   IM  VLLC++++C YI+  I FA+  +F++  ++ WI I     D
Sbjct:   10 RACAICAIIVHVGALLVFGW-LWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQD 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig2046.5823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAL4_9PHAE6.040e-537.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig2046contigH-elongata_contig2046:5051..8627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size2188
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig2046.5823.1prot_H-elongata_contig2046.5823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig2046 5737..6962 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.5774002-UTR-H-elongata_contig2046:5050..51241622930147.5774002-UTR-H-elongata_contig2046:5050..5124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2046 5051..5124 +
1691679299.19703-UTR-H-elongata_contig2046:5050..51241691679299.19703-UTR-H-elongata_contig2046:5050..5124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2046 5051..5124 +
1622930147.5884225-UTR-H-elongata_contig2046:5704..57361622930147.5884225-UTR-H-elongata_contig2046:5704..5736Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2046 5705..5736 +
1691679299.2043352-UTR-H-elongata_contig2046:5704..57361691679299.2043352-UTR-H-elongata_contig2046:5704..5736Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2046 5705..5736 +
1622930147.6565342-UTR-H-elongata_contig2046:6962..86271622930147.6565342-UTR-H-elongata_contig2046:6962..8627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2046 6963..8627 +
1691679299.2369845-UTR-H-elongata_contig2046:6962..86271691679299.2369845-UTR-H-elongata_contig2046:6962..8627Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig2046 6963..8627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.6073015-CDS-H-elongata_contig2046:5736..58401622930147.6073015-CDS-H-elongata_contig2046:5736..5840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2046 5737..5840 +
1691679299.2145815-CDS-H-elongata_contig2046:5736..58401691679299.2145815-CDS-H-elongata_contig2046:5736..5840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2046 5737..5840 +
1622930147.6249151-CDS-H-elongata_contig2046:6301..65061622930147.6249151-CDS-H-elongata_contig2046:6301..6506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2046 6302..6506 +
1691679299.2222264-CDS-H-elongata_contig2046:6301..65061691679299.2222264-CDS-H-elongata_contig2046:6301..6506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2046 6302..6506 +
1622930147.6408973-CDS-H-elongata_contig2046:6854..69621622930147.6408973-CDS-H-elongata_contig2046:6854..6962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2046 6855..6962 +
1691679299.2295642-CDS-H-elongata_contig2046:6854..69621691679299.2295642-CDS-H-elongata_contig2046:6854..6962Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig2046 6855..6962 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig2046.5823.1

>prot_H-elongata_contig2046.5823.1 ID=prot_H-elongata_contig2046.5823.1|Name=mRNA_H-elongata_contig2046.5823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MASVLLCVFNKCCYISAAISFAIGGLFNLYAMIIWIRIAQAFNDITEGSA
YSNSTWGHIAGGLAVPPAISAFTMFLGSALAVIAVMNWTQNEAHDAPIVL
HHQTLPSGGTGAVIHGANHSYPATAIEEQRPQPHAYSV*
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mRNA from alignment at H-elongata_contig2046:5051..8627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig2046.5823.1 ID=mRNA_H-elongata_contig2046.5823.1|Name=mRNA_H-elongata_contig2046.5823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3577bp|location=Sequence derived from alignment at H-elongata_contig2046:5051..8627+ (Himanthalia elongata Himel1 dioecious)
GGTGCGGAGAATTTCCATCGCGATCATAATCTTCAACGCCATCGCCCTCG
TTACCATTGGGTTTATCCTCTGGGGTAAGCTAAGAAATGAATGGTGTTTA
ATTTGCCTCTGTAAAACAGCTTGAAGGCACGAACCAAAAATAACAGACTG
CTTGTTTTATTGGTAACTAGTCCTCGATGGAAATTTATCCATGGGATTAA
CTCCCAAAATCATATGCCCCGACTAGTATCAGTAAGCGCAGGCAAGATCG
CCTAAAATAAAAAGGTACGATGTAGATAGGCGCATGGTACTAGGATGAAA
CACTGTTATCGTATTGAAAATAACTAACAACACGAGTGAGTGAGTAACGC
CGATCAGAAGGCCCATCATAGCTTGAGGTTGATCGCGTTGCGATGTTTTC
CACCGGTGCACTTCACTCTCCACACGATTTATAAAATAGGGATGCCTACA
GAAGATGATGTAATTATAAATCAGTCCCATGATTTTTTTTAAGTATCTGC
TGCTTTGTGATTGTCTGTCAGCAGCTTATGTATCATATATATACACAATT
ATATTGTACGTAAAAAATAGTTAAAATTAATGCACACAAGTAGTGCCTAT
TTTCTATATGTCTTCTGGTTCGTTCGTCATCCGTTTTTTTGTATCGCTCT
GCAGTGCAATGGTGTGGCTCCCTCACCGGCATTATTATGGCATCGGTCCT
TCTCTGCGTTTTCAACAAATGTTGCTATATCTCGGCCGCAATCTCATTCG
CTATTGGTGGCCTCTTCAATCTTTATGCAATGATAATATGGTAAGCAATG
GGTGCACGCGTGGACGGCAACTGGAGCCGCTCGATTTAGGGCTACCGATG
TACTTTCACACCGCTGTCAAACCACCATAAATAAATGTATACCTCCGTCC
CATCTCCGTTCGGTTTGGGGCTACACAGCGCTCCAGCAATAATTGAATAA
ATATATATTATGATGTCAATCACTGGCCGTCTGTCTTAGTTGGACCCGCT
TTTAGTTTCAGCACAACGTGTCGTGAGATACAGTACCTTTAGCAGCCCTA
GACTGTCTTTGGCGCAGGAAGAAAAACGTATAATGTTTGGAGCACTACTC
GTACTGACTGGTGTCTGGTATTACCTTTTGTCTGTGAAATAAAATGCTAA
TAAAGATGCGACTTGATGCTTCCAGTATTTTCCTTTCAAGCTATTTCAAA
CAAAGCATACTCCCGAAACGCTCGCGCGATGGGTACAACGATTGAACACA
GGATTCGCATTGCTCAAGCTTTCAACGACATTACGGAGGGTTCCGCTTAC
TCAAACAGCACATGGGGTCATATAGCCGGTGGACTGGCGGTGCCCCCTGC
AATTTCTGCCTTTACGATGTTCCTCGGATCTGCCCTCGCCGTCATTGCCG
TCATGAATTGGACTCAGAATGAGGCCCACGACGCTCCAATCGTCCTTCAC
CACCAGGTGCGTCTATTTTGCGTGAGGGATGTCGTTCCCCTTGCACTTAT
TACCAGTTACACAACAAGTTTCGAGGAAAGCGAAGTTTTTCCTTCCTTGT
TATGAGAGCCTCGCCGATAAATTGATAAATCCATGTGTTGATTCATTTTT
GTGCGTTGAAATATTTTATTTTATATTTACCCCGTGTTAGGGCGTGGATG
CTTTCTTCATATAATATGTGGATCAGTAAAACAAAAATAATAGCGATTCA
TCATATCCCGAAACGTCGTCTACTTCTCTGATCCTCCGCGGCCGACCTCG
ATTGCTTACTCTTATCTGGATACTCCACCGCCCCCCTTGTCTTTCGATCA
GCAGACACTCCCCAGTGGTGGAACTGGTGCTGTCATTCATGGCGCCAACC
ATTCCTACCCCGCCACTGCCATTGAAGAGCAAAGGCCACAACCTCACGCG
TACTCCGTATAAACATTCCACCGGCACCAGCAAGTCCTAGTGGGATTTCA
CACCCGTCGTAAGCCTTCCACGTGCTGAACTCTACTTCAAACGGACATTC
TCAAATGAACGGTCCCGTCAGCAGTAGTAATTGATTGACGTTGTAGAGTA
TCGCATATTTATCGATGCAGGTAGTGGCAAGTTTTGCTGGTATGGCCATA
TAACGGAGATTGCGTGTTATGTGTATAGCACCACTAAGGGTCGTTCTTTG
TAGAGTATAGTGCTTGTCGCGAGCCGCATTTTTTGAAAATCCAGTGTGAA
CTGCTCAGTAAACACCTTGGTTGTCCTGAACAATTTCCCGCCTGGCACAT
ACTCTGGTGAGCAATGGAGCGAGAATGCCGCTCACATTTTGCATGGAAAA
AGGGAACAATACGAGAGAAAAAAGTATCGCCATGAATCACTATGTTTCGG
GTGTTTTTTCTCTGTGGCGAGTGCCTCAGTATTCTGTGATTCGGCTTGGG
GATGGAGGGTGGCCAGCTATGGACTGGAAGAAAGGGATTGTATTTTTGAT
TTTGTTATTCGAATTGGAAGTGGAGGCTGGCCAGCTACAGTCTGTCATCA
TCGATGGCTTCGACCGTGTTCTAAGCCTCTGTTGTCCGTGAAGAAGCATT
AACTTGCTAGGACTTTGGAGCATCATAACACGGATTAGCGTCATCTTGTG
GATAAGGAATACACTGTGATATTCACTTTTTCTTCTCCTGAATCCCTAAA
TATCCCACAATGCGACACTTACAACTTAAGGCCCACTCTCTACGTTCCGT
CTTGGCGGCCCCACGCAGGGAAATGTGATGATTTTGTGATCATGAGTAGC
AATGTATACACCCGAAAACAGGCTTGCCTAAAAAGTGGGAGCGGATTTTG
AAATGGGAACGGACGGCCAGCGTGTTGTTTTTGGTCAATCAGGAATTAGT
ATCCTTCGAAGACACCTTCGAGGTGTATGTGGGTACATCGAAAGGTAGGC
CGACGGCGCGCTGCCATCATACCATCATACATAGTAAGGGAATGATGGAG
CCACGTCATTGATTCCGTGACCTGCAGCGACGCGGGGTGTATACCAAAAC
AGATTGACTGGCGCCGATAAAGGCAAGGGTTGACAAGAGCAGTTGTATTT
TTTAGAGGGTCGGTATGGTTGATTTGTATGTATATGCAGTTATATGGCGA
GTTGGCGAGCGACTGCCAATGACGACGAGTCAACAATGCAGCCGTCTTTG
CAATATACTTTAACCGATAAGAAAGGGTTTATCTCTAGCAATTGGGGCGG
GAGCGGACTATCTATGCATGGAGTGTGTAATCGACTACATCAGACGCAAG
CCTTGGTGGTGGTGGGGGGATCCTCCTATAACCCCCCCCGTGTCCCATAC
CTTGTTGGTTGCCCTCTTTTTTGTGTTCGTTTATTTTTCTTTGGAGATGT
CACTTTTCCGAGTATTTGTATTATGCACTATTTGCCGTTTCTTTTGTATT
GGAGAGTATGTTGAACAGTGTGCTTTTTCTACCTTGTGACCACGGGCTGG
ATTTTGACATCAGCTTATTTGAGAATTCAATCAATTCAATTCATCAAAAA
GACGTTGTATCCTGTACTATTACCACTCCATGAATAAATGACATTCTCAC
AAAAATATATGGGGACATCTTACGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig2046:5051..8627+

>mRNA_H-elongata_contig2046.5823.1 ID=mRNA_H-elongata_contig2046.5823.1|Name=mRNA_H-elongata_contig2046.5823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig2046:5051..8627+ (Himanthalia elongata Himel1 dioecious)
ATGGCATCGGTCCTTCTCTGCGTTTTCAACAAATGTTGCTATATCTCGGC
CGCAATCTCATTCGCTATTGGTGGCCTCTTCAATCTTTATGCAATGATAA
TATGATGGCATCGGTCCTTCTCTGCGTTTTCAACAAATGTTGCTATATCT
CGGCCGCAATCTCATTCGCTATTGGTGGCCTCTTCAATCTTTATGCAATG
ATAATATGGATTCGCATTGCTCAAGCTTTCAACGACATTACGGAGGGTTC
CGCTTACTCAAACAGCACATGGGGTCATATAGCCGGTGGACTGGCGGTGC
CCCCTGCAATTTCTGCCTTTACGATGTTCCTCGGATCTGCCCTCGCCGTC
ATTGCCGTCATGAATTGGACTCAGAATGAGGCCCACGACGCTCCAATCGT
CCTTCACCACCAGGATTCGCATTGCTCAAGCTTTCAACGACATTACGGAG
GGTTCCGCTTACTCAAACAGCACATGGGGTCATATAGCCGGTGGACTGGC
GGTGCCCCCTGCAATTTCTGCCTTTACGATGTTCCTCGGATCTGCCCTCG
CCGTCATTGCCGTCATGAATTGGACTCAGAATGAGGCCCACGACGCTCCA
ATCGTCCTTCACCACCAGACACTCCCCAGTGGTGGAACTGGTGCTGTCAT
TCATGGCGCCAACCATTCCTACCCCGCCACTGCCATTGAAGAGCAAAGGC
CACAACCTCACGCGTACTCCGTATAAACACTCCCCAGTGGTGGAACTGGT
GCTGTCATTCATGGCGCCAACCATTCCTACCCCGCCACTGCCATTGAAGA
GCAAAGGCCACAACCTCACGCGTACTCCGTATAA
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