mRNA_H-elongata_contig204516.5820.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204516.5820.1
Unique NamemRNA_H-elongata_contig204516.5820.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204516.5820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204516contigH-elongata_contig204516:329..1050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size724
Cds size381
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.4242966-CDS-H-elongata_contig204516:328..7091622930147.4242966-CDS-H-elongata_contig204516:328..709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204516 329..709 +
1691679299.1508615-CDS-H-elongata_contig204516:328..7091691679299.1508615-CDS-H-elongata_contig204516:328..709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204516 329..709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.437676-UTR-H-elongata_contig204516:709..10501622930147.437676-UTR-H-elongata_contig204516:709..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig204516 710..1050 +
1691679299.1581485-UTR-H-elongata_contig204516:709..10501691679299.1581485-UTR-H-elongata_contig204516:709..1050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig204516 710..1050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204516.5820.1prot_H-elongata_contig204516.5820.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204516 329..709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204516.5820.1

>prot_H-elongata_contig204516.5820.1 ID=prot_H-elongata_contig204516.5820.1|Name=mRNA_H-elongata_contig204516.5820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
CWNQYFAAPCTFRCNLRPLFVWSSHLVQNPVTHHVSFPQVTPTRPSNDEN
PSCPGLGVSLSTALVKYFPVRFNIHLSPCGPIEYFPKLYWPFSRPHTGNS
MNVDAYNQVESLLLGIMTRARHLRGT*
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mRNA from alignment at H-elongata_contig204516:329..1050+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204516.5820.1 ID=mRNA_H-elongata_contig204516.5820.1|Name=mRNA_H-elongata_contig204516.5820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=722bp|location=Sequence derived from alignment at H-elongata_contig204516:329..1050+ (Himanthalia elongata Himel1 dioecious)
TGTTGGAACCAATATTTTGCAGCACCTTGCACGTTTCGCTGCAACCTTCG
ACCGTTATTTGTTTGGTCGTCACATTTAGTGCAAAATCCCGTCACTCATC
ATGTGAGCTTTCCTCAAGTCACCCCCACCCGCCCCTCGAATGATGAGAAT
CCTTCATGTCCTGGACTAGGAGTGTCCTTGAGTACAGCGCTTGTCAAGTA
TTTTCCCGTTCGTTTCAACATCCATCTCTCTCCCTGCGGTCCGATAGAGT
ACTTTCCAAAATTGTACTGGCCCTTCTCCAGGCCACATACCGGCAACAGT
ATGAACGTGGACGCTTACAACCAGGTGGAGTCACTATTATTAGGGATCAT
GACACGAGCCAGACACTTGCGCGGCACCTAGAGGTGTGCGAATCACATGT
GCCGTACACAGAGAATCGCCAACAAGCCACGCCTTTACACTGACGGATCT
TCGTTGTAGGCTTATCAGAAATATAGCGCGTCTGGGTAATGGCGCTGCAG
GAGGCGCCCCGTATGATGGGGTTACCGAGACCAGCGAAGCACATGAAGAG
CGTAAAACATATGGTAATGTTTCCTGTCATTTGGAGCGGTTTAAAGCAAA
ACACCAAAACCATGAGCTTTTTCCTTGGGATTCCACACCCGTAGCTTCAG
CACGCCGTGAACGTCGGGTCGTGAATGCTACATAGGGGTGCACCAGAACG
AAACCCATTTTGAGAGAGGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig204516:329..1050+

>mRNA_H-elongata_contig204516.5820.1 ID=mRNA_H-elongata_contig204516.5820.1|Name=mRNA_H-elongata_contig204516.5820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig204516:329..1050+ (Himanthalia elongata Himel1 dioecious)
TGTTGGAACCAATATTTTGCAGCACCTTGCACGTTTCGCTGCAACCTTCG
ACCGTTATTTGTTTGGTCGTCACATTTAGTGCAAAATCCCGTCACTCATC
ATGTGAGCTTTCCTCAAGTCACCCCCACCCGCCCCTCGAATGATGAGAAT
CCTTCATGTCCTGGACTAGGAGTGTCCTTGAGTACAGCGCTTGTCAAGTA
TTTTCCCGTTCGTTTCAACATCCATCTCTCTCCCTGCGGTCCGATAGAGT
ACTTTCCAAAATTGTACTGGCCCTTCTCCAGGCCACATACCGGCAACAGT
ATGAACGTGGACGCTTACAACCAGGTGGAGTCACTATTATTAGGGATCAT
GACACGAGCCAGACACTTGCGCGGCACCTAGTGTTGGAACCAATATTTTG
CAGCACCTTGCACGTTTCGCTGCAACCTTCGACCGTTATTTGTTTGGTCG
TCACATTTAGTGCAAAATCCCGTCACTCATCATGTGAGCTTTCCTCAAGT
CACCCCCACCCGCCCCTCGAATGATGAGAATCCTTCATGTCCTGGACTAG
GAGTGTCCTTGAGTACAGCGCTTGTCAAGTATTTTCCCGTTCGTTTCAAC
ATCCATCTCTCTCCCTGCGGTCCGATAGAGTACTTTCCAAAATTGTACTG
GCCCTTCTCCAGGCCACATACCGGCAACAGTATGAACGTGGACGCTTACA
ACCAGGTGGAGTCACTATTATTAGGGATCATGACACGAGCCAGACACTTG
CGCGGCACCTAG
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