mRNA_H-elongata_contig20449.5819.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20449.5819.1
Unique NamemRNA_H-elongata_contig20449.5819.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20449.5819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20449contigH-elongata_contig20449:946..2181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size487
Cds size465
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20449.5819.1prot_H-elongata_contig20449.5819.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20449 968..2181 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.3567564-UTR-H-elongata_contig20449:945..9671622930147.3567564-UTR-H-elongata_contig20449:945..967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20449 946..967 +
1691679299.1277127-UTR-H-elongata_contig20449:945..9671691679299.1277127-UTR-H-elongata_contig20449:945..967Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20449 946..967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.3738577-CDS-H-elongata_contig20449:967..12711622930147.3738577-CDS-H-elongata_contig20449:967..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20449 968..1271 +
1691679299.135287-CDS-H-elongata_contig20449:967..12711691679299.135287-CDS-H-elongata_contig20449:967..1271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20449 968..1271 +
1622930147.3874378-CDS-H-elongata_contig20449:2020..21811622930147.3874378-CDS-H-elongata_contig20449:2020..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20449 2021..2181 +
1691679299.1428251-CDS-H-elongata_contig20449:2020..21811691679299.1428251-CDS-H-elongata_contig20449:2020..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20449 2021..2181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20449.5819.1

>prot_H-elongata_contig20449.5819.1 ID=prot_H-elongata_contig20449.5819.1|Name=mRNA_H-elongata_contig20449.5819.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=155bp
MVGFSTLEAKKIMLENYASSSTMSTDWKHRGCDEILTGSSGRRRLGLRLV
LWMLMLTAWGSCEGFNGSLRCPTGGSSIFQWRARRSTLASRCGGLPIATP
GENARYSSSSRPEVQHDQRELPRNQAAQSQRQPSMDTRDGTAPCFAADPL
PRNEA
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mRNA from alignment at H-elongata_contig20449:946..2181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20449.5819.1 ID=mRNA_H-elongata_contig20449.5819.1|Name=mRNA_H-elongata_contig20449.5819.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1236bp|location=Sequence derived from alignment at H-elongata_contig20449:946..2181+ (Himanthalia elongata Himel1 dioecious)
CCCCAGAGCTGTCTGGCAAGTAATGGTAGGCTTCAGCACCCTGGAAGCGA
AAAAAATCATGCTCGAAAATTATGCGTCTTCCTCCACGATGAGCACCGAT
TGGAAGCATCGAGGTTGTGATGAAATTTTGACTGGCAGTAGTGGACGTAG
GAGGCTAGGGCTGCGGCTGGTCTTGTGGATGTTGATGTTGACAGCGTGGG
GATCATGTGAAGGGTTTAACGGCAGCCTCAGATGTCCGACAGGGGGTTCA
TCGATTTTTCAGTGGAGGGCAAGGAGATCGACCTTAGCTTCGAGATGTGG
AGGCCTTCCCATTGCAACGCCTGGAGGTGATTTCAGAGTCTTGAACATTA
TCGAAAGATGTACCAGCCTGCCTTCAGGACAGCAGTAGGGAAACTCTAGC
GGTTCATGTAGCGGATATATGAATAGCGGGCGAGTTTACCCTGTACAACA
CTTGATTTTTCTCGAGACTAATGGTTCAACTGTCTGTAGTGCCAGAACAA
AATTTGTTTGCCTGTTTAATTTGATCTCACTCCTGGTCGATAGGACTCTT
CAATGTGCTTGATACAGAAAAATGTACATCCTGCCTCTGGGTACGCGTCT
GCTTGTGGTCGCGATTGCAGCCCCTCGGGCCTTTAAACGGTTGTCGTTCC
CTTTTACAGTATATCCATACTTGTAGTGCTTTCGTATCCCATGACCGTTG
TCTTACGGTAGTTTCTTCTATACGCACAAACTTCACCGGTATGTCGCTCT
TACAGAGTCAGTGGGCGGCCTCCCAGAGATCGATATGGCGCATGAGGCGG
TGTAAAGATAGCTAGCCCCCTGGTCGGTCGTCTACTTTGTCGGCGTGCCC
CACCCAGCATTCCACCGCCGACAGTGACACCGCCCTCTCTTCTCGCACAA
CCTCTAGATTTTAATGGAGACGTGGCATATAACTCCGTGCTCTTGTCTTA
CGTGATACCATGTATTTGACCGCAACAGCCAAAAATAAAAAAACGTTTGG
TGGGATCTTGGTATGATCTAGTGTATATTCTGATCCTGGTCCGGATCTTG
ATTTGATAACTGCAACCTACGACAGAGAACGCGAGATATAGCTCTAGCTC
TAGACCCGAAGTGCAACACGACCAGCGAGAACTACCGCGGAACCAAGCCG
CGCAGAGCCAACGGCAGCCATCGATGGATACGCGCGATGGTACCGCTCCT
TGCTTCGCCGCCGACCCCCTCCCCCGCAACGAGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig20449:946..2181+

>mRNA_H-elongata_contig20449.5819.1 ID=mRNA_H-elongata_contig20449.5819.1|Name=mRNA_H-elongata_contig20449.5819.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=930bp|location=Sequence derived from alignment at H-elongata_contig20449:946..2181+ (Himanthalia elongata Himel1 dioecious)
ATGGTAGGCTTCAGCACCCTGGAAGCGAAAAAAATCATGCTCGAAAATTA
TGCGTCTTCCTCCACGATGAGCACCGATTGGAAGCATCGAGGTTGTGATG
AAATTTTGACTGGCAGTAGTGGACGTAGGAGGCTAGGGCTGCGGCTGGTC
TTGTGGATGTTGATGTTGACAGCGTGGGGATCATGTGAAGGGTTTAACGG
CAGCCTCAGATGTCCGACAGGGGGTTCATCGATTTTTCAGTGGAGGGCAA
GGAGATCGACCTTAGCTTCGAGATGTGGAGGCCTTCCCATTGCAACGCCT
GGAGATGGTAGGCTTCAGCACCCTGGAAGCGAAAAAAATCATGCTCGAAA
ATTATGCGTCTTCCTCCACGATGAGCACCGATTGGAAGCATCGAGGTTGT
GATGAAATTTTGACTGGCAGTAGTGGACGTAGGAGGCTAGGGCTGCGGCT
GGTCTTGTGGATGTTGATGTTGACAGCGTGGGGATCATGTGAAGGGTTTA
ACGGCAGCCTCAGATGTCCGACAGGGGGTTCATCGATTTTTCAGTGGAGG
GCAAGGAGATCGACCTTAGCTTCGAGATGTGGAGGCCTTCCCATTGCAAC
GCCTGGAGAGAACGCGAGATATAGCTCTAGCTCTAGACCCGAAGTGCAAC
ACGACCAGCGAGAACTACCGCGGAACCAAGCCGCGCAGAGCCAACGGCAG
CCATCGATGGATACGCGCGATGGTACCGCTCCTTGCTTCGCCGCCGACCC
CCTCCCCCGCAACGAGGCCAGAACGCGAGATATAGCTCTAGCTCTAGACC
CGAAGTGCAACACGACCAGCGAGAACTACCGCGGAACCAAGCCGCGCAGA
GCCAACGGCAGCCATCGATGGATACGCGCGATGGTACCGCTCCTTGCTTC
GCCGCCGACCCCCTCCCCCGCAACGAGGCC
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