mRNA_H-elongata_contig204473.5818.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig204473.5818.1
Unique Name	mRNA_H-elongata_contig204473.5818.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 6.460e-32
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            DPETD+LIQEAMK+GFGDCTILCIAHRLHTVAFYDRVLVL QG+V EYDTPLALL +P S+FR MCEK
Sbjct: 1409 DPETDALIQEAMKEGFGDCTILCIAHRLHTVAFYDRVLVLDQGQVAEYDTPLALLQDPYSQFRGMCEK 1476

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A4Q1BBB9_TREME (Uncharacterized protein n=1 Tax=Tremella mesenterica TaxID=5217 RepID=A0A4Q1BBB9_TREME)

HSP 1 Score: 94.7 bits (234), Expect = 6.770e-24
Identity = 43/68 (63.24%), Postives = 53/68 (77.94%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            DPETD+LIQ  ++  F D T++ IAHRL TVA+YDR+LV+  G+V EYDTPLAL D P S FRS+CEK
Sbjct:    2 DPETDALIQTIIQTEFSDITLISIAHRLQTVAYYDRILVMDAGQVAEYDTPLALFDEPGSVFRSLCEK 69

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A836CNA1_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNA1_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.520e-23
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            DPETD LIQE M+    DCTILCIAHRLHT+ FYDR+LVL +GRV EY  PLALL +P S FR++CEK
Sbjct:  624 DPETDILIQEVMRSELRDCTILCIAHRLHTIIFYDRILVLERGRVAEYAPPLALLRDPHSLFRALCEK 691

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A8H7M6V0_9AGAM (Multidrug resistance-associated ABC transporter n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7M6V0_9AGAM)

HSP 1 Score: 97.1 bits (240), Expect = 6.070e-22
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            D +TDS++Q+ ++  F   T+LCIAHRL+T+AFYDRVLV+ +GR+ EYDTPL L DNPDS+FR+MC+K
Sbjct:  483 DVDTDSMVQQMIQRDFHGKTLLCIAHRLNTIAFYDRVLVMDKGRLKEYDTPLNLFDNPDSQFRAMCDK 550

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A066W7W4_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066W7W4_9AGAM)

HSP 1 Score: 97.1 bits (240), Expect = 6.430e-22
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            D +TDS++Q+ ++  F   T+LCIAHRL+T+AFYDRVLV+ +GR+ EYDTPL L DNPDS+FR+MC+K
Sbjct: 1114 DVDTDSMVQQMIQRDFHGKTLLCIAHRLNTIAFYDRVLVMDKGRLKEYDTPLNLFDNPDSQFRAMCDK 1181

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: L8WX25_THACA (Cadmium ion transporter n=1 Tax=Thanatephorus cucumeris (strain AG1-IA) TaxID=983506 RepID=L8WX25_THACA)

HSP 1 Score: 97.1 bits (240), Expect = 6.430e-22
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            D +TDS++Q+ ++  F   T+LCIAHRL+T+AFYDRVLV+ +GR+ EYDTPL L DNPDS+FR+MC+K
Sbjct:  621 DVDTDSMVQQMIQRDFHGKTLLCIAHRLNTIAFYDRVLVMDKGRLKEYDTPLNLFDNPDSQFRAMCDK 688

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A074RRZ2_9AGAM (Multidrug resistance-associated ABC transporter n=6 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074RRZ2_9AGAM)

HSP 1 Score: 97.1 bits (240), Expect = 6.440e-22
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            D +TDS++Q+ ++  F   T+LCIAHRL+T+AFYDRVLV+ +GR+ EYDTPL L DNPDS+FR+MC+K
Sbjct: 1343 DVDTDSMVQQMIQRDFHGKTLLCIAHRLNTIAFYDRVLVMDKGRLKEYDTPLNLFDNPDSQFRAMCDK 1410

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A0B7FSZ5_THACB (Oligomycin resistance ATP-dependent permease YOR1 n=9 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0B7FSZ5_THACB)

HSP 1 Score: 97.1 bits (240), Expect = 6.440e-22
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            D +TDS++Q+ ++  F   T+LCIAHRL+T+AFYDRVLV+ +GR+ EYDTPL L DNPDS+FR+MC+K
Sbjct: 1344 DVDTDSMVQQMIQRDFHGKTLLCIAHRLNTIAFYDRVLVMDKGRLKEYDTPLNLFDNPDSQFRAMCDK 1411

[Close]

BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: A0A835YUJ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.790e-22
Identity = 43/66 (65.15%), Postives = 51/66 (77.27%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMC 198
            D ETD++IQE MK+GF DCTILCIAHRLHTV +YD++LVL  GRV EYDTP  LL +  S F  +C
Sbjct: 1247 DRETDTIIQETMKEGFQDCTILCIAHRLHTVVYYDKILVLEAGRVAEYDTPRHLLKDKSSRFYGLC 1312

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BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Match: UPI00080D77EE (hypothetical protein n=1 Tax=Kwoniella mangroviensis CBS 8507 TaxID=1296122 RepID=UPI00080D77EE)

HSP 1 Score: 94.4 bits (233), Expect = 1.130e-21
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1

Query:    1 DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDTPLALLDNPDSEFRSMCEK 204
            DPETD+LIQ  ++  F D T++ IAHRL TVA+YDR+LV+ +GRV EYD PL L DNP+S FRS+C+K
Sbjct:  228 DPETDALIQRIIQTEFMDVTLISIAHRLQTVAYYDRILVMEEGRVAEYDEPLILFDNPNSVFRSLCDK 295

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot

BLAST of mRNA_H-elongata_contig204473.5818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G0B6_ECTSI	6.460e-32	85.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A4Q1BBB9_TREME	6.770e-24	63.24	Uncharacterized protein n=1 Tax=Tremella mesenteri...	[more]
A0A836CNA1_9STRA	1.520e-23	69.12	P-loop containing nucleoside triphosphate hydrolas...	[more]
A0A8H7M6V0_9AGAM	6.070e-22	61.76	Multidrug resistance-associated ABC transporter n=...	[more]
A0A066W7W4_9AGAM	6.430e-22	61.76	Uncharacterized protein (Fragment) n=1 Tax=Rhizoct...	[more]
L8WX25_THACA	6.430e-22	61.76	Cadmium ion transporter n=1 Tax=Thanatephorus cucu...	[more]
A0A074RRZ2_9AGAM	6.440e-22	61.76	Multidrug resistance-associated ABC transporter n=...	[more]
A0A0B7FSZ5_THACB	6.440e-22	61.76	Oligomycin resistance ATP-dependent permease YOR1 ...	[more]
A0A835YUJ8_9STRA	8.790e-22	65.15	P-loop containing nucleoside triphosphate hydrolas...	[more]
UPI00080D77EE	1.130e-21	61.76	hypothetical protein n=1 Tax=Kwoniella mangroviens...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig204473	contig	H-elongata_contig204473:278..832 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	125.6
Seed ortholog evalue	9.1e-27
Seed eggNOG ortholog	2880.D7G0B6
KEGG ko	ko:K05665
KEGG TC	3.A.1.208.8
KEGG Pathway	ko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
EggNOG free text desc.	ATPase activity, coupled to transmembrane movement of substances
EggNOG OGs	COG1132@1,KOG0054@2759
COG Functional cat.	V
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02000
Hectar predicted targeting category	other localisation
Exons	2
Model size	204
Cds size	204
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930147.3075588-CDS-H-elongata_contig204473:277..401	1622930147.3075588-CDS-H-elongata_contig204473:277..401	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig204473 278..401 -
1691679299.107949-CDS-H-elongata_contig204473:277..401	1691679299.107949-CDS-H-elongata_contig204473:277..401	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig204473 278..401 -
1622930147.3195531-CDS-H-elongata_contig204473:752..832	1622930147.3195531-CDS-H-elongata_contig204473:752..832	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig204473 753..832 -
1691679299.117355-CDS-H-elongata_contig204473:752..832	1691679299.117355-CDS-H-elongata_contig204473:752..832	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig204473 753..832 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig204473.5818.1	prot_H-elongata_contig204473.5818.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig204473 278..832 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig204473:278..832-
coding sequence from alignment at H-elongata_contig204473:278..832-

protein sequence of mRNA_H-elongata_contig204473.5818.1

>prot_H-elongata_contig204473.5818.1 ID=prot_H-elongata_contig204473.5818.1|Name=mRNA_H-elongata_contig204473.5818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
DPETDSLIQEAMKDGFGDCTILCIAHRLHTVAFYDRVLVLSQGRVLEYDT
PLALLDNPDSEFRSMCEK

mRNA from alignment at H-elongata_contig204473:278..832-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig204473.5818.1 ID=mRNA_H-elongata_contig204473.5818.1|Name=mRNA_H-elongata_contig204473.5818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=555bp|location=Sequence derived from alignment at H-elongata_contig204473:278..832- (Himanthalia elongata Himel1 dioecious)
GATCCTGAGACTGATTCGCTCATCCAAGAAGCGATGAAGGACGGCTTCGG
GGACTGTACGATCCTTTGCATCGCCCACAGGTAGCTAGTTATTTAGTAAC
CTAGTTCGTTAGTTACCTCTAATGCTGCTGCTGTTTTTGGTTGTTGTTGA
AACAATGTTGGTAAAACAGAAACAAAAAAGAAAGAGAATGTGTATCATAC
GCAGTATCATACGCAAGAATTGCTTGTAGTGCATGGTATTAAGTATTAAT
AGGACAAGGGCATTGTATCACGGCCTATTTTCTTTGTGTACCGCACGTGT
CGTATCATGTACCGTATCCCGTACGTATTGTTATTCGGCGAGGGTGAGGG
TGAGGGCTTCCGGAGACTACACTTTCGTAACTTGTACTCCTGAAACTCTG
CGCGATTCAAAACACATACACCCCAACGAAGGCTGCATACGGTGGCTTTC
TACGACCGAGTCCTGGTGCTGAGTCAGGGGAGAGTTCTCGAGTACGACAC
GCCTCTTGCTCTCTTGGACAACCCGGACAGCGAGTTCAGGTCGATGTGTG
AAAAG

Coding sequence (CDS) from alignment at H-elongata_contig204473:278..832-

>mRNA_H-elongata_contig204473.5818.1 ID=mRNA_H-elongata_contig204473.5818.1|Name=mRNA_H-elongata_contig204473.5818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig204473:278..832- (Himanthalia elongata Himel1 dioecious)
GATCCTGAGACTGATTCGCTCATCCAAGAAGCGATGAAGGACGGCTTCGG
GGACTGTACGATCCTTTGCATCGCCCACAGGATCCTGAGACTGATTCGCT
CATCCAAGAAGCGATGAAGGACGGCTTCGGGGACTGTACGATCCTTTGCA
TCGCCCACAGGCTGCATACGGTGGCTTTCTACGACCGAGTCCTGGTGCTG
AGTCAGGGGAGAGTTCTCGAGTACGACACGCCTCTTGCTCTCTTGGACAA
CCCGGACAGCGAGTTCAGGTCGATGTGTGAAAAGGCTGCATACGGTGGCT
TTCTACGACCGAGTCCTGGTGCTGAGTCAGGGGAGAGTTCTCGAGTACGA
CACGCCTCTTGCTCTCTTGGACAACCCGGACAGCGAGTTCAGGTCGATGT
GTGAAAAG