mRNA_H-elongata_contig20443.5817.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20443.5817.1
Unique NamemRNA_H-elongata_contig20443.5817.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126X1D3_9PHAE (Putative LOV domain-containing protein n=6 Tax=Sargassum TaxID=3015 RepID=A0A126X1D3_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 2.300e-40
Identity = 79/131 (60.31%), Postives = 95/131 (72.52%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHNWQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEENNSPRPQPGRSILPLPIVDTKVDVDSIGANNTSASVTYIAQHLPKAQTAG 796
            MSASVK PVYTSVVHR LQHHNW++ E+DF +DDLGLDL ++S I+GFLMNEP DS G FYPP  SE DP+VK EPM  EE+N PRPQ G+   P   +DTKVD+  +   NT+   T  +Q  PK QT+G
Sbjct:    1 MSASVKPPVYTSVVHRKLQHHNWREAEIDFQADDLGLDLTDISAISGFLMNEPPDSSGHFYPPWVSELDPVVKPEPMIFEESNHPRPQSGQLAPPTLTMDTKVDMSLLNTTNTTTRGTPSSQRGPKVQTSG 131
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: C5NSW5_9PHAE (Aureochrome2-like protein n=1 Tax=Fucus evanescens TaxID=87147 RepID=C5NSW5_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 1.580e-36
Identity = 83/138 (60.14%), Postives = 98/138 (71.01%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHNWQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDP--------LVKAEPMALEENNSPRPQPGRSILPLPIVDTKVDVDS--IGANNTSASVTYIAQHLPKAQ 787
            MSASVKAPVYTSVVHR LQHHNWQ T+VD H DD  LDL ELSGIAGFLMNE  D+LGL +PP TSE +         +VKAEPM +E +NSPRPQPGRS+    ++ T+ D  +  +GA NTS  VT +AQ  P A+
Sbjct:    1 MSASVKAPVYTSVVHRKLQHHNWQGTDVDCHLDDFALDLIELSGIAGFLMNEHPDNLGLLHPPWTSEPEXXXXXXXXXVVKAEPMIVE-SNSPRPQPGRSVPTSSMLGTRADTSTFKVGAVNTSTGVTRVAQRAPTAR 137
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126WZ82_9PHAE (Putative LOV domain-containing protein n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A126WZ82_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.740e-23
Identity = 60/122 (49.18%), Postives = 79/122 (64.75%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHNWQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEE-NNSPRPQPGRSILPLPIVDTKVDVDSIGANNTSASVTYIA 766
            MSA+VKAPV+TS+VH  LQHH WQ T+VDF +DD+G+DL EL  ++GFLMNE  D  G FYPP   + DP+VK EP+A++      + QP   +   P + T+VD  S G N T    T +A
Sbjct:    1 MSATVKAPVFTSMVHHKLQHHGWQGTDVDF-TDDIGMDLTELQALSGFLMNETPDLSGHFYPPWVGDTDPMVKDEPVAVDPIGPRSQQQPPPRLTETPALGTRVDTSSGGKNLTDGFATNLA 121
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126X138_9PHAE (Putative LOV domain-containing protein n=1 Tax=Saccharina sculpera TaxID=416830 RepID=A0A126X138_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.330e-22
Identity = 61/91 (67.03%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHN-WQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEENN--SPRPQ 667
            MSASVKAPVYTS+VHR LQHH  WQD   D  SDDLGLDL +LS I+GFLMNE  DS G FYPP  +E +P+VK EPM L EN+  S RPQ
Sbjct:    1 MSASVKAPVYTSMVHRKLQHHTTWQDA--DLQSDDLGLDLTDLSSISGFLMNEVPDSAGHFYPPWVAEPEPIVKGEPMMLAENDPISSRPQ 89
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126WUU6_9PHAE (Putative LOV domain-containing protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A126WUU6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.060e-20
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHN-WQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEENNSPRPQPGRSILPLPIVDTKV 712
            MSA VKAPV+TS+VH  LQHH+ W +T+VDF   D+GLDLAEL  ++GFLMNE  DS G FYPP  ++ DPLVKAEP+A  +     PQ   S+    I  T V
Sbjct:    1 MSAEVKAPVFTSIVHNKLQHHSGWPETDVDFS--DIGLDLAELQNLSGFLMNETPDSTGHFYPPWANDADPLVKAEPVASGQTPDTGPQVLSSVATPAIPQTNV 102
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126WVY3_9PHAE (Putative LOV domain-containing protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A126WVY3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 7.020e-20
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHN-WQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEENNSPRPQPGRSILPLPIVDTKV 712
            MSA VKAPV+TS+VH  LQHH+ W +T+VDF   D+GLDLAEL  ++GFLMNE  DS G FYPP  ++ DPLVKAEP+A  +     PQ   S+    I  T V
Sbjct:    1 MSAEVKAPVFTSIVHNKLQHHSGWPETDVDFS--DIGLDLAELQNLSGFLMNETPDSTGHFYPPWANDADPLVKAEPVASGQTPDTGPQVLSSVATPAIPQTNV 102
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: D8LE91_ECTSI (Aureochrome 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE91_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 8.450e-17
Identity = 63/131 (48.09%), Postives = 77/131 (58.78%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHH-NWQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMA--LEENNSPR-PQ------------PGRSILPL-PIVDTKVDVDSIGANNTS 745
            M ASVK PV+TS+VHR +QHH +WQD   DF  DDLGLDL +LS + GFLMNE  D+ G FYPP  +E  PLVK EP A  + +  +PR PQ            P    LP  P+ D  +DV   GA  +S
Sbjct:    1 MPASVKPPVFTSMVHRKVQHHTSWQDA--DFQPDDLGLDLTDLSTMTGFLMNEVPDNTGHFYPPWANELSPLVKDEPSAFMMPDPAAPRQPQXXXXXXXXDQRLPAPEGLPAAPVADPALDVIMGGATGSS 129
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126WUU5_9PHAE (Putative LOV domain-containing protein n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A126WUU5_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.430e-16
Identity = 62/139 (44.60%), Postives = 80/139 (57.55%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHH-NWQDTEVDFH-SDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEENNSPRPQP----GRSILPL-PIVDTKVDVDSIGANNTSASVTYIAQHLPKAQTAGG 799
            M ASVK+PV+TS+VHR +Q   +WQD   DFH +DD GLDL ELSGI GFLMNE  D+LG FYPP  ++  P VK EP  + E  +  PQP         P+ P+ D  +D+  +G     +     A+  PK   A G
Sbjct:    1 MPASVKSPVFTSMVHRKVQPQTSWQDA--DFHVADDFGLDLTELSGITGFLMNEVPDNLGHFYPPWANDPAPSVKDEPFMMTEPAARPPQPVXXXXXXXXPVAPVADPALDI-VMGGTGAVSVAGCTARLPPKPAKAAG 136
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126X141_9PHAE (Putative LOV domain-containing protein n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A126X141_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.700e-15
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHNWQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMALEENNSPRPQPGR 676
            M ASVK+P +TS+V   ++H +WQD   DFH+DD GLDLA+LS + GFLMNE  DS G FYPP  ++  PLVK EP +      P P P R
Sbjct:    1 MPASVKSPRFTSLVQHKVKHTSWQDA--DFHADDFGLDLADLSSMTGFLMNEVPDSSGHFYPPWANDPVPLVKDEPSSFM---MPEPAPAR 86
[Close]
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Match: A0A126X2Y4_PETFA (Putative LOV domain-containing protein n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A126X2Y4_PETFA)

HSP 1 Score: 85.9 bits (211), Expect = 2.680e-14
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 2 
Query:  404 MSASVKAPVYTSVVHRNLQHHNWQDTEVDFHSDDLGLDLAELSGIAGFLMNEPQDSLGLFYPPLTSEHDPLVKAEPMA 637
            M ASVK+P +TS+V   ++H  WQD   DFH DD GLDLA+LS + GFL+NE  D+ G FYPP  +E  PLVK EP A
Sbjct:    1 MPASVKSPRFTSLVQHKVKHTTWQDA--DFHPDDFGLDLADLSSMTGFLLNEVPDNAGHFYPPWVNEPVPLVKDEPSA 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20443.5817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A126X1D3_9PHAE2.300e-4060.31Putative LOV domain-containing protein n=6 Tax=Sar... [more]
C5NSW5_9PHAE1.580e-3660.14Aureochrome2-like protein n=1 Tax=Fucus evanescens... [more]
A0A126WZ82_9PHAE1.740e-2349.18Putative LOV domain-containing protein n=1 Tax=Dic... [more]
A0A126X138_9PHAE1.330e-2267.03Putative LOV domain-containing protein n=1 Tax=Sac... [more]
A0A126WUU6_9PHAE3.060e-2054.81Putative LOV domain-containing protein n=1 Tax=Ish... [more]
A0A126WVY3_9PHAE7.020e-2054.81Putative LOV domain-containing protein n=1 Tax=Ish... [more]
D8LE91_ECTSI8.450e-1748.09Aureochrome 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A126WUU5_9PHAE1.430e-1644.60Putative LOV domain-containing protein n=1 Tax=Pun... [more]
A0A126X141_9PHAE3.700e-1552.75Putative LOV domain-containing protein n=1 Tax=Col... [more]
A0A126X2Y4_PETFA2.680e-1456.41Putative LOV domain-containing protein n=1 Tax=Pet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20443contigH-elongata_contig20443:185..5953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue5e-17
Seed eggNOG ortholog2880.D8LE91
KEGG koko:K14858,ko:K20715
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.PAS domain
EggNOG OGs2QU3S@2759,COG2202@1
Ec32 ortholog descriptionaureochrome 2
Ec32 orthologEc-00_001360.1
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03009
Hectar predicted targeting categoryother localisation
Exons3
Model size1551
Cds size1011
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20443.5817.1prot_H-elongata_contig20443.5817.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20443 588..5816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.203801-UTR-H-elongata_contig20443:184..5871622930147.203801-UTR-H-elongata_contig20443:184..587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20443 185..587 +
1691679299.068078-UTR-H-elongata_contig20443:184..5871691679299.068078-UTR-H-elongata_contig20443:184..587Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20443 185..587 +
1622930147.2666156-UTR-H-elongata_contig20443:5816..59531622930147.2666156-UTR-H-elongata_contig20443:5816..5953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20443 5817..5953 +
1691679299.099742-UTR-H-elongata_contig20443:5816..59531691679299.099742-UTR-H-elongata_contig20443:5816..5953Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20443 5817..5953 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.2216253-CDS-H-elongata_contig20443:587..6601622930147.2216253-CDS-H-elongata_contig20443:587..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20443 588..660 +
1691679299.0776129-CDS-H-elongata_contig20443:587..6601691679299.0776129-CDS-H-elongata_contig20443:587..660Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20443 588..660 +
1622930147.23626-CDS-H-elongata_contig20443:1022..15631622930147.23626-CDS-H-elongata_contig20443:1022..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20443 1023..1563 +
1691679299.0850246-CDS-H-elongata_contig20443:1022..15631691679299.0850246-CDS-H-elongata_contig20443:1022..1563Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20443 1023..1563 +
1622930147.2500265-CDS-H-elongata_contig20443:5419..58161622930147.2500265-CDS-H-elongata_contig20443:5419..5816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20443 5420..5816 +
1691679299.0923085-CDS-H-elongata_contig20443:5419..58161691679299.0923085-CDS-H-elongata_contig20443:5419..5816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20443 5420..5816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20443.5817.1

>prot_H-elongata_contig20443.5817.1 ID=prot_H-elongata_contig20443.5817.1|Name=mRNA_H-elongata_contig20443.5817.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=337bp
MSASVKAPVYTSVVHRNLQHHNWQDTEVDFHSDDLGLDLAELSGIAGFLM
NEPQDSLGLFYPPLTSEHDPLVKAEPMALEENNSPRPQPGRSILPLPIVD
TKVDVDSIGANNTSASVTYIAQHLPKAQTAGGGSTLRKNASGGVTRRRSS
SKEEQAKKRRERNRVLARRTRLRKKFFFQSLQQQVRTSPALQTKLASRLL
RAQRSRRSTLGRLGSFGGPHVHPARANTQEDLYDDVRDDSPLIKRTIDCN
FVPLLLAVVTCVLIVTTAHGSGMTRSPDSRDGELKCLTYFLDRLERFPAR
PSPSLFGYNIFEVCTKRFLATLSSFCCRRLAKMSTR*
back to top

mRNA from alignment at H-elongata_contig20443:185..5953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20443.5817.1 ID=mRNA_H-elongata_contig20443.5817.1|Name=mRNA_H-elongata_contig20443.5817.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5769bp|location=Sequence derived from alignment at H-elongata_contig20443:185..5953+ (Himanthalia elongata Himel1 dioecious)
CAAAGAATGATTGATTTGATTGAATTATCACATAAATATATGTACAAATC
TGGAGAGTATAGTTAGAAGTAAGGGGCCATCCGTCTTAAACTCCACGACC
TGCAAGAACTTAGCTCAACAGCTTTTCTGAAAGCTGTGCAGCGCAGACCC
TGGCTTCAGGTCAATACCTGACATCATATTGCCCTGTTTTATTGCAACTG
TGAGCGACTCCCAGGTCGAGGGCTATTCTTTCGGACGATCTCAGTCGCGA
GACAACCTATAAACAATTCAAACCTCAAGTTGCATCCCCAGCTGCATCCC
CAGCATCGATATTTCCAGGGACTTCCTTGGAGCAAGCTTATATTCGAGGG
GCACCCGGCAAGTGCAGCATACTGGGTCGACGAGTAAATCGACATACAAG
AGCATGTCGGCGAGCGTTAAGGCTCCTGTCTACACATCTGTGGTACATCG
TAACCTCCAACATCATAATTGGCAAGGTTGGTCTGTTGAAGAAATAAGAC
TACATCGATGCATGAATGATTTCCACACCACGCGAGTAAGTAGAACACGT
TGGTCTTTTCCCCCCAAGCGCATGGGACATCCCCCATAGCCTTCCCGACT
GACTTCCGCATCGTTGGAAGTCTGAGTTGTTGATAATGCTCTTTTGTCCC
CGTGTTGCGTGGGCTGGACCAATGAACAATGCTCCATTTTTTATTCGCCG
AAGGAAGTCATTTGTTTGGTGCACAGATCACGCCGGCAAGCTTTGCCAAC
AAAATAACACCATTCGATGCTGCTTCCTTTTGCCCCTCCTTGGCAAACTG
CTATCTATGCTTGTTGCTCTCTTATCCCCTCGCATCAGACACAGAGGTCG
ATTTTCACTCGGATGATCTCGGGTTGGATTTAGCCGAACTCTCAGGAATA
GCAGGGTTCCTGATGAACGAACCCCAGGATAGCTTGGGGCTATTCTACCC
CCCTTTGACCAGTGAACATGACCCATTGGTCAAGGCCGAGCCCATGGCCC
TTGAGGAAAACAACAGCCCTCGGCCACAGCCGGGGCGATCTATACTGCCC
TTACCCATAGTGGATACAAAGGTGGATGTGGACTCCATCGGCGCCAATAA
CACAAGTGCCAGCGTTACATATATTGCTCAACATCTCCCGAAGGCGCAAA
CGGCTGGAGGAGGGTCGACTCTGAGGAAGAATGCTTCTGGGGGTGTCACG
AGGAGGCGATCTTCAAGTAAAGAGGAGCAGGCCAAAAAGAGGAGGGAGAG
GAACAGAGTTCTGGCGCGCCGCACCCGCTTACGCAAAAAGTTTTTCTTTC
AGTCTCTTCAGCAACAGGTGAGAACATCTCCTGCACTACAAACCAAACTA
GCTTCTAGATTGCTTCGAGCTCAGAGGTCGCTGGAGGAGCAGTTGTTGCC
TTGGACCAGTCTGACTTTTCGGTCTTGTTTGTTTTAGAATTTGACTCTAG
TCAAAATAAAATAAAATGGTCTGCTGTATATCTATCTCTATATAAACTCT
ACCGCTGTAAGTGTTTGGGCATCACATATAGCAGAGAGTAAGTATCAACC
GAATGGATTGCCTCCTCCTTGATAATTGGTCTCGTCCCCTCTCCCCTCTC
CCCTATCCCCTATCCCCGTTCGCGCCTGAGAATTTGGCCTCGCGAGACGG
GTTCAGCATTCCCGTCCCGGGTCATCAGCCTGCCCATTTTCTCAGCCCAG
GCTGAATCTGGAGCGTATTCCCGGGATCCTCTCGTTTTCCGCGACGGTTT
TTAATGTCTGCCGTCAACCGCCATCGGGTCAATCCCGATTTCATCAGGTG
ACGCAATTGCGTACTGATGGTGTTTACCACCGAGAGTCCGCCGACACTGC
GCCAGTAGCCCTCAAGGTAGCTTGAATAACGGACACAACCTATTCAGGTA
AACTCCGTTGACCATTTATTGTTTTTTGTGCGCCTCTTTTTTCCCATTTC
CACCATTGGTAAAACAAAGTGGACATGTGCTATCCATTACCAACTAACTA
TCCATACAGTGGACGCACCGTATTGTCTGTAGAACGTTGTTTTCACTTAA
TGTACCAAGATTTATGTGTTCTTGACAACACACTACCCCCTGGAACACAC
TAGTTTTCATATTATATACACAGCACCACAGATAAACCGCCTTCGATGCT
GTCTGCGACTGTATCGCACATGTCCACTCTTATCAATAGTGGGTGTGGGA
AAATAGAGGCGTACAATAATTGGTCCATGGGGTTACCTCAATAGGCTGCA
CCCGTTTACTCAAGCTACCTTGAGGACTGCTGTCTCAGTGCCGACCGACT
CTCGATAGTAAACGAAATCGGTACGCAATTGCGTGACCTGATAAATCGGG
ATTGGCCCAATGGCGGTTGACGGTAGAGATGGACGCCGTCGTGGAAAGCG
AGAGGATTGAGAGGATACCGGGAGTAAGCACCAGATTCAGATTGGGTTGA
TATTATGAGCACGCTGACGTCGGACGGACTGCGGAACCCATCTCGCGAGA
CCAAATTATCAGGCGCTAACGGGGGCAGGGAAAAATATGTTTCTCTTTTA
TTAAATTGCAGATAACCGCGCAATCCGGCTCTGTTTACTTATACTAATTA
ATTTAATACTGCACGATGATGTAACCTATTACACCTGAGGGTTACTTTCC
GTAAACATATTTTTGGCTGGAATTGCGCATGCATCCAGCCACGTATCCTT
TTCACACGAACATGGCTCTCGGCCGGAACGCCACTCCCTCTCCATGAACT
CCAACGCTTTACCCGGATAAAAATATGGTCTGAGGACGAAAACGCGGGAA
AGGGTGGGCAGGCTTGTCCCCTTCCAATACATGGGTAAAGCTAGTCGCTC
GCCGCTTGGCGAAACAATTAGAAAATAGAGAGGATTATCCGACAACCAGA
AATCACGACGGCCGACTCTCCTCGTAACCTCCCCATCCAAACCTGCAACG
TACTCGAGCAGTGGTGTTGTCATTATGCCTCCCCTTTCCTTTCAACAAAC
AATTGGTGCGGTTCCCTCCGGACTACACCCGCACATATTTCCTTTCTATG
CAAGAAAATCCCCGTAAGTCTTTCGCTGGGCCCGAATTATGAGGGTTAAG
AGAGAGTAAAATGGTAAAGCTAGTCGGATCGTGTGTGTACAACGGAACGC
ACAACATGGCAAACTAGAACTCCTCGAGTCTACGCGGTTGGCGCTCATTG
CTCTTACTATGGTTGCAGTCTCCACAATGGACCAACCGGTTGTTTACTAA
TAGTAATATAATAGTAATCCCAAAACATACAATCACATAAAAAAGCCTCC
GGAAGCCATAAGTATAGGACGGAGCACCAACCATCAGTCTTGCGCTCGGC
GCCAATCATGAGTAAAGGGCAAGGAGAGAGAGTAAAGGGCAAGCTAGTCG
GATAGTAAGTAGCCGAATAGGGCCTGCGCTCATGTCTGTACACCGAAACG
CACAGCACCGTGAGCTAAAATCCCCGAGTCCACGCGAGTCGTGTTCACTA
CTGCTGCCATGGTTACTGTATTCACGAACGGACCCACCGCTTGCCTAGTA
AGCCCTCCTCCCCTCTTGACCCAAAATATGTCATGACACAAAAACGCCCC
AGCAGGCGATGGAGATCCCTGCGACACAGCGCACCGACTTATGTTGGCTA
CTGCTGTTCCTAATGCTATAATTCCCGGGGATGAGATGGGTTAGCATAAA
GCGTGAGTCAAGGCAAACAAGAAAACGCGGCGGGATTCATACCCTAGTCC
CTGATGGAAGGGGCCAAGCTGAAAAGTTGCGCTGTGGCCAAACCGTACCT
TTCCGCCATTGACAAACCCGCCTCGAGCTCTTCCTTCTCGCTCCACCGTG
CTTGCCGGCCCGTTGTCCGAAGCAGCCGGGGCTCGGTCCATTCCACCGAC
CCCAACCCAAAACGTCGAAACAGGACCACATATGCGGCATATAAAGGGAA
GGGAGGCTACAGGCCGATCCTTCCCGATCTCCCGGGTGGCTACAGCTACT
ACTGCAACATAATTTTTCCTCTGTTGCGAGATTCCAACTTACCCCCTCGG
GCCTGTTCAGCTGACCATGAGCAGGAGGCGATCATATCCGGTTGATGGAT
ATTCTGGTATAGAATATTCTGCTATAGGTGATAACCACATATATTTCTAA
ACCTGGTATTTTTTTTTTTTATAAAATTGGCCAAAACAGAAACTGCATAT
GTTATGCATGCAGCACCAGATTCAGCCTGGGTTGAAAAAATGAGCAGGCT
GACGCGGGACGGGACTGCTGAATCCGTCTCGCGAGACCAAATTATCAGGC
GCGAACGGGGATAGGGGAAAATTATTTTCCCTGTTCAGCTGACCACGAGC
AGACTATATGTGATGATCACACATACAATAATGGTTCAATATTATAGTAG
TATTGTTGACCAAAGTATGAGCAGAACCTTAAAACAAATCGAATCGAATC
GAATCGAATCTCTATCTATTTAGTACAAAGCAGATGACTAGTTCGTCTGG
TACTCTTATAGTGTAAGTCTTCTTGAAATGGGTTACTCTTGTGACATTCA
GTAGTCCGTCTCGTGGTTTCATGCCCACATGAGGTTCTTTGGCCACTTTT
AAGGGCAAAAGCGGCCTCGCTGTGAAGCGACTTGGATCGTTTCTGGCTTT
AAACAATTCCCCTGATACGCGGAAGGCGTCCTGTTTCGTCTAATTTACCG
TAATCCCCCGTTCCACCTCCATAACATTATTATTCCACACTCCTGTCTCA
AGCACCTTCGCTCTGCCCTTCCGCGGGATATCAAACGCCCGGAGAGTCGC
TCTCCACGCCGTTGTTCAGTTTTTTTCATCCCGACCTCGCCCCGTTGAGT
GCACCCTCGAGCGTCTCGAACATGATCCGCCTACGGGTCGAGGTCAAGCT
AGATCGCTCATCATGCGAATGAGCGTCCCCACCCGCGAAAGCTTTTATAC
TAGTAATAGTACGATGGTCTCAACGTTTTAATCTCGATTACAGTATTGAT
TACAGTTACCGTTACTGTGTCGTTGGATAGTATCTTCATCTTCGGTTCAT
GGTATATTGTAGGAAGGAGTGTTGTGGTCCATTCTCTCGAGCTGCGGCCC
GCTGATTTGTGGCAGCACCCTCGGGCTTATGGTGCGGAATTGACCGAAGG
ACTGCTAGCGAAGAGTCCATGTATGACAGCCGAACAAACCGGCGTCGCGT
TGTTTGCCTCGGTCTTCTGCCACCCGAGTCTTGAGCAGGAGGTCCACGTT
GGGCCGGTTGGGCAGCTTCGGCGGGCCTCATGTACATCCAGCACGCGCGA
ATACGCAAGAGGATCTCTACGATGACGTCAGGGATGACAGCCCTTTAATA
AAACGAACGATTGATTGTAACTTTGTTCCGCTGCTTTTAGCTGTAGTAAC
TTGTGTATTAATAGTTACTACTGCACATGGTAGCGGCATGACGCGGTCTC
CGGATTCTAGAGACGGTGAGCTCAAGTGCCTCACATACTTCCTTGATAGG
CTCGAACGTTTTCCCGCGCGCCCCTCTCCGTCGCTTTTCGGTTACAACAT
ATTTGAGGTTTGCACGAAACGTTTCCTCGCCACTCTTTCATCGTTCTGTT
GTAGAAGATTGGCGAAGATGTCCACACGCTAACCCTAAAATATACCTGGT
ATGTATGTATCTAAATAGGTAGCCTTGAGTTGGGCTGCAGTGGCATGTTG
AACGACAGGGGGGGCCAGCAAAGACCTCCCATGTTTTTCTTTTTTTAATT
TGAGCTCATTCCAATCCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20443:185..5953+

>mRNA_H-elongata_contig20443.5817.1 ID=mRNA_H-elongata_contig20443.5817.1|Name=mRNA_H-elongata_contig20443.5817.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2022bp|location=Sequence derived from alignment at H-elongata_contig20443:185..5953+ (Himanthalia elongata Himel1 dioecious)
ATGTCGGCGAGCGTTAAGGCTCCTGTCTACACATCTGTGGTACATCGTAA
CCTCCAACATCATAATTGGCAAGATGTCGGCGAGCGTTAAGGCTCCTGTC
TACACATCTGTGGTACATCGTAACCTCCAACATCATAATTGGCAAGACAC
AGAGGTCGATTTTCACTCGGATGATCTCGGGTTGGATTTAGCCGAACTCT
CAGGAATAGCAGGGTTCCTGATGAACGAACCCCAGGATAGCTTGGGGCTA
TTCTACCCCCCTTTGACCAGTGAACATGACCCATTGGTCAAGGCCGAGCC
CATGGCCCTTGAGGAAAACAACAGCCCTCGGCCACAGCCGGGGCGATCTA
TACTGCCCTTACCCATAGTGGATACAAAGGTGGATGTGGACTCCATCGGC
GCCAATAACACAAGTGCCAGCGTTACATATATTGCTCAACATCTCCCGAA
GGCGCAAACGGCTGGAGGAGGGTCGACTCTGAGGAAGAATGCTTCTGGGG
GTGTCACGAGGAGGCGATCTTCAAGTAAAGAGGAGCAGGCCAAAAAGAGG
AGGGAGAGGAACAGAGTTCTGGCGCGCCGCACCCGCTTACGCAAAAAGTT
TTTCTTTCAGTCTCTTCAGCAACAGGTGAGAACATCTCCTGCACTACAAA
CCAAACTAGCTTCTAGATTGCTTCGAGCTCAGAGGTCACACAGAGGTCGA
TTTTCACTCGGATGATCTCGGGTTGGATTTAGCCGAACTCTCAGGAATAG
CAGGGTTCCTGATGAACGAACCCCAGGATAGCTTGGGGCTATTCTACCCC
CCTTTGACCAGTGAACATGACCCATTGGTCAAGGCCGAGCCCATGGCCCT
TGAGGAAAACAACAGCCCTCGGCCACAGCCGGGGCGATCTATACTGCCCT
TACCCATAGTGGATACAAAGGTGGATGTGGACTCCATCGGCGCCAATAAC
ACAAGTGCCAGCGTTACATATATTGCTCAACATCTCCCGAAGGCGCAAAC
GGCTGGAGGAGGGTCGACTCTGAGGAAGAATGCTTCTGGGGGTGTCACGA
GGAGGCGATCTTCAAGTAAAGAGGAGCAGGCCAAAAAGAGGAGGGAGAGG
AACAGAGTTCTGGCGCGCCGCACCCGCTTACGCAAAAAGTTTTTCTTTCA
GTCTCTTCAGCAACAGGTGAGAACATCTCCTGCACTACAAACCAAACTAG
CTTCTAGATTGCTTCGAGCTCAGAGGTCCAGGAGGTCCACGTTGGGCCGG
TTGGGCAGCTTCGGCGGGCCTCATGTACATCCAGCACGCGCGAATACGCA
AGAGGATCTCTACGATGACGTCAGGGATGACAGCCCTTTAATAAAACGAA
CGATTGATTGTAACTTTGTTCCGCTGCTTTTAGCTGTAGTAACTTGTGTA
TTAATAGTTACTACTGCACATGGTAGCGGCATGACGCGGTCTCCGGATTC
TAGAGACGGTGAGCTCAAGTGCCTCACATACTTCCTTGATAGGCTCGAAC
GTTTTCCCGCGCGCCCCTCTCCGTCGCTTTTCGGTTACAACATATTTGAG
GTTTGCACGAAACGTTTCCTCGCCACTCTTTCATCGTTCTGTTGTAGAAG
ATTGGCGAAGATGTCCACACGCTAACAGGAGGTCCACGTTGGGCCGGTTG
GGCAGCTTCGGCGGGCCTCATGTACATCCAGCACGCGCGAATACGCAAGA
GGATCTCTACGATGACGTCAGGGATGACAGCCCTTTAATAAAACGAACGA
TTGATTGTAACTTTGTTCCGCTGCTTTTAGCTGTAGTAACTTGTGTATTA
ATAGTTACTACTGCACATGGTAGCGGCATGACGCGGTCTCCGGATTCTAG
AGACGGTGAGCTCAAGTGCCTCACATACTTCCTTGATAGGCTCGAACGTT
TTCCCGCGCGCCCCTCTCCGTCGCTTTTCGGTTACAACATATTTGAGGTT
TGCACGAAACGTTTCCTCGCCACTCTTTCATCGTTCTGTTGTAGAAGATT
GGCGAAGATGTCCACACGCTAA
back to top