mRNA_H-elongata_contig20439.5816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20439.5816.1
Unique NamemRNA_H-elongata_contig20439.5816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20439.5816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20439contigH-elongata_contig20439:3793..4428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size102
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20439.5816.1prot_H-elongata_contig20439.5816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20439 3798..4367 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.1002119-UTR-H-elongata_contig20439:3792..37971622930147.1002119-UTR-H-elongata_contig20439:3792..3797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20439 3793..3797 -
1691679299.0320709-UTR-H-elongata_contig20439:3792..37971691679299.0320709-UTR-H-elongata_contig20439:3792..3797Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20439 3793..3797 -
1622930147.1504407-UTR-H-elongata_contig20439:4367..44281622930147.1504407-UTR-H-elongata_contig20439:4367..4428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20439 4368..4428 -
1691679299.057252-UTR-H-elongata_contig20439:4367..44281691679299.057252-UTR-H-elongata_contig20439:4367..4428Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20439 4368..4428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.1168509-CDS-H-elongata_contig20439:3797..38801622930147.1168509-CDS-H-elongata_contig20439:3797..3880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20439 3798..3880 -
1691679299.0397487-CDS-H-elongata_contig20439:3797..38801691679299.0397487-CDS-H-elongata_contig20439:3797..3880Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20439 3798..3880 -
1622930147.1325057-CDS-H-elongata_contig20439:4348..43671622930147.1325057-CDS-H-elongata_contig20439:4348..4367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20439 4349..4367 -
1691679299.0470839-CDS-H-elongata_contig20439:4348..43671691679299.0470839-CDS-H-elongata_contig20439:4348..4367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20439 4349..4367 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20439.5816.1

>prot_H-elongata_contig20439.5816.1 ID=prot_H-elongata_contig20439.5816.1|Name=mRNA_H-elongata_contig20439.5816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
MWAPPKGAFSSLRAGGLRQQQLEQQRDGGLTKL*
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mRNA from alignment at H-elongata_contig20439:3793..4428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20439.5816.1 ID=mRNA_H-elongata_contig20439.5816.1|Name=mRNA_H-elongata_contig20439.5816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=636bp|location=Sequence derived from alignment at H-elongata_contig20439:3793..4428- (Himanthalia elongata Himel1 dioecious)
GAGGAAAAGATAAATCTGTCCGTTCGCTGGTAGATCAGGAAAACCGCCCT
TTTTCTACCGCATGTGGGCGCCCCCAAAAGGTAACTTGCTCATGGGCTGA
AATCTTCCGTGGTACTGTTACACGTATTCTTTGTTGGGGGGGGTATACTG
GTCGAATCGGTCTGTATACATCAATCGACGTGGGGGTCAGTGCATACCGC
GAGTCCCCCTGCATCTATGGATGTTTTTTTTCTGACTTGCGTAGTGGAGG
GCCATAAACATTTTGGCATGCGCTCGTTAAAAAAAAGACAGGTCAACCAA
GTAATGTAATAAGTTACACTTGTTCTTAGAATCGAGTCCTTGGAGACATT
TGGCACGGAAAAGTCGGCACGGTTTGACCTTTAATCCCCCGAAACCAACG
ATCGCACCACACTTCATGCGCTGAATTTTTTGGGCCGCGTTAGACCCCTG
TTGCGTAGCCGTAGCAGCAGAGCCTTGGGCCTTCGCGGTTGTTTGCCTAC
CCTCTGAAGTCCGGCCGGATATCGCATTTCGCCCTCCTTTGCTGTCAGGG
GCATTTAGCTCTCTCCGTGCCGGTGGTCTCAGGCAGCAGCAATTGGAGCA
ACAGAGGGACGGTGGGCTAACGAAGCTCTAGCTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig20439:3793..4428-

>mRNA_H-elongata_contig20439.5816.1 ID=mRNA_H-elongata_contig20439.5816.1|Name=mRNA_H-elongata_contig20439.5816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig20439:3793..4428- (Himanthalia elongata Himel1 dioecious)
ATGTGGGCGCCCCCAAAAGATGTGGGCGCCCCCAAAAGGGGCATTTAGCT
CTCTCCGTGCCGGTGGTCTCAGGCAGCAGCAATTGGAGCAACAGAGGGAC
GGTGGGCTAACGAAGCTCTAGGGGCATTTAGCTCTCTCCGTGCCGGTGGT
CTCAGGCAGCAGCAATTGGAGCAACAGAGGGACGGTGGGCTAACGAAGCT
CTAG
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