mRNA_H-elongata_contig20428.5813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20428.5813.1
Unique NamemRNA_H-elongata_contig20428.5813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20428.5813.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.470e-16
Identity = 108/292 (36.99%), Postives = 138/292 (47.26%), Query Frame = 1 
Query:    1 IRRVRSTVHLTGGTSAETKRRIIDLLAPAKSEV-ACTTSCSSSRPRSTAPPSSSDLTVLEEGARC-----------LEERLQNYPGALRDEDTDVDGTLNSFWKEDESIEGISEKSTGRQRQEGGRSSRFG----------------------------EVGGGSIEVGDQNRNRSXXXXXXXXXXXXXNESSGK--RPRGLFPVSICFGRPDIERFITNTVQGTAVTAEWVDTKVDS--VARKSSQPPSNYKHTPLRPIAQALVRLNTNQRISKKDLMSADLSVVKSKSAE 744
            +RRV+STV+LTG  + +TK+R++DLLAP++S+V A     S+SR  S           LE+G              L   L +Y G L+D   D +G+            G +E+ +  +  +GG  S  G                              G G  E         XXXXXXXXX      S+G+  R RG  PVS+ FGRPDI  FIT TV+GTAV A+W    VDS   A  SS P        LR   Q L RLNT QRISK+DLM ADL+VV S  A+
Sbjct:  585 LRRVKSTVYLTGKPTNKTKKRMVDLLAPSRSDVVAANAGTSTSRSSSLR---GDPACALEDGRGXXXXXXXPEVSNLNADLDDYLGVLKD---DFEGS------------GRTERGSLDRDDDGGDGSVMGYSAWGGDSILGXXXXXXXXXXXXXXXXXXXGMGRTEAAXXXXXXXXXXXXXXXXRHRGQPSAGQLQRARGYHPVSLNFGRPDIAAFITGTVRGTAVVAQWAP-PVDSRPPAPSSSSPRQQPTAGGLR---QMLTRLNTGQRISKRDLMEADLTVVDSSLAK 854
[Close]
BLAST of mRNA_H-elongata_contig20428.5813.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.440e-13
Identity = 95/281 (33.81%), Postives = 124/281 (44.13%), Query Frame = 1 
Query:    1 IRRVRSTVHLTGGTSAETKRRIIDLLAPAKSEV-ACTTSCSSSRPRSTAPPSSSDLTVLEEGA-------RC--LEERLQNYPGALRDEDTDVDGTLNSFWKEDESIEGISEKSTGRQRQEGGRSSRFGEV--GGGSIEVGDQN-------------------------RNRSXXXXXXXXXXXXXNESSGK--RPRGLFPVSICFGRPDIERFITNTVQGTAVTAEWVDTKVDSVARKSSQPPSNYKHTPLRPIAQALVRLNTNQRISKKDLMSADLSVV 726
            +RRV+STV LTG  + +TK+R++DLLAP++ +V A T   S+SR  S           LE+G         C  L   L +Y G L+D   D +G+            G +E+ +     +GG  S  G    GG SI  G                            R                  S+G+  R RG  PVS+ FGRPDI  FIT TV+GTAV A+W    V+S              T    + Q L RLNT QRISK+DLM ADL+VV
Sbjct:  603 LRRVKSTVFLTGKPTNKTKKRMVDLLAPSRGDVVAATAGTSTSRSSSLR---GDPACALEDGRGGGGGGPECSNLNADLDDYLGVLKD---DFEGS------------GRTERGSLDGDDDGGDGSVMGYSAWGGDSILGGRXXXXXXXXXXXXXXXXXXMERTEAAAARRAEEERTAASKKRHLGQPSAGQLQRARGYHPVSLNFGRPDIAAFITGTVRGTAVVAQWAP-PVESRPXXXXXXXXXXXPT-AGGLRQMLTRLNTGQRISKRDLMEADLTVV 863
[Close]
BLAST of mRNA_H-elongata_contig20428.5813.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 8.150e-9
Identity = 95/286 (33.22%), Postives = 129/286 (45.10%), Query Frame = 1 
Query:    1 IRRVRSTVHLTGGTSAETKRRIIDLLAPAKSEVACTTSCSSSRPRSTAPPSSSDLTVLEEGARCLEERLQNYPGALRDEDTDVDGTLNSFWKEDESIEGISEKSTGRQRQEGGRSSRFGEVGGGSIEVGDQNRNRSXXXXXXXXXXXXXNESSG--------KRPRGLFPVSICFGRPDIERFITNTVQGTAVTA--EWVDT-----KVDSVAR--------------KSSQPPSNYKH---------TPLRPIAQ-ALVRLNTNQRISKKDLMSADLSVVKSKSA 741
            +RRV STVHLTG  + +TK+R+ DLLA +K+            P +    S SD T LE G      R  ++           DG   +                                GG   ++G  + NR XXXXXXXXXXXXX             + P G  P+S+ FGRPDIE+F+T T++G++ +   +W  T     K+   A               ++S PPS  +H         T  R + +  L RLNTNQRISK+DLMSADLSVV  K++
Sbjct:  346 LRRVNSTVHLTGKPTEKTKQRLTDLLAHSKAP-----------PPAETGSSCSDPTDLEAGFAAARSRNDDFD----------DGAYGA--------------------------------GGDMEDLGGCSSNRXXXXXXXXXXXXXXXXXXXXXXXKRLRRTPFGK-PISLNFGRPDIEKFLTETIRGSSSSQHEKWAATGGPPGKIVGAAAVGDSWQPQQNASKLRASPPPSTGRHAEKERDYSDTSSRDVRKKVLARLNTNQRISKRDLMSADLSVVPGKAS 577
[Close]
BLAST of mRNA_H-elongata_contig20428.5813.1 vs. uniprot
Match: A0A6H5JAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC5_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 2.190e-8
Identity = 94/291 (32.30%), Postives = 124/291 (42.61%), Query Frame = 1 
Query:    1 IRRVRSTVHLTGGTSAETKRRIIDLLAPAKSEVACTTSCSSSRPRSTAPP------SSSDLTVLEEGARCLEERLQNYPGALRDEDTDVDGTLNSFWKEDESIEGISEKSTGRQRQEGGRSSRFGEVGGGSIEVGDQNRNRSXXXXXXXXXXXXXNESSGKRPRGLFPVSICFGRPDIERFITNTVQGTAVTA----EWVDT-------------------KVDSVARKSSQPPSNYKH---------------TPLRPIAQALVRLNTNQRISKKDLMSADLSVVKSKSA 741
            +RRV+STVHLTG  + +TK+R+ DLLA                  S+APP      S SD T LE G      R  ++           DG                           G      ++GG S           XXXXXXXXXXXXX     +R     P+S+ FGRPDIE+F+T  + G++ ++    EW  T                   +  S   ++S PPS  +H               T +R   + L RLNTNQRISK+DLMSADLSVV  K++
Sbjct:   17 LRRVKSTVHLTGKPTDKTKQRLTDLLA-----------------HSSAPPPVGTGSSCSDPTDLEAGFAAARSRNDDFD----------DGAY-------------------------GAGGEMEDLGGCSSNXXXXXXXXXXXXXXXXXXXXXXXXKRLRRTPFGNPISLNFGRPDIEKFLTEIIHGSSTSSSQLEEWAATGGPPGKIVGSAAVGDSWQPQQSSSKPRASPPPSTGRHAESEREYSETSSRVRTDVR--KKVLARLNTNQRISKRDLMSADLSVVPGKAS 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20428.5813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8C8_ECTSI3.470e-1636.99Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JHI2_9PHAE1.440e-1333.81FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C4_ECTSI8.150e-933.22Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JAC5_9PHAE2.190e-832.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20428contigH-elongata_contig20428:4931..6870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog2880.D7G8C8
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size798
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20428.5813.1prot_H-elongata_contig20428.5813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20428 4931..6870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.6912773-CDS-H-elongata_contig20428:4930..53131622930146.6912773-CDS-H-elongata_contig20428:4930..5313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 4931..5313 +
1691679298.9603062-CDS-H-elongata_contig20428:4930..53131691679298.9603062-CDS-H-elongata_contig20428:4930..5313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 4931..5313 +
1622930146.710967-CDS-H-elongata_contig20428:5889..61261622930146.710967-CDS-H-elongata_contig20428:5889..6126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 5890..6126 +
1691679298.972062-CDS-H-elongata_contig20428:5889..61261691679298.972062-CDS-H-elongata_contig20428:5889..6126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 5890..6126 +
1622930146.7217777-CDS-H-elongata_contig20428:6692..68701622930146.7217777-CDS-H-elongata_contig20428:6692..6870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 6693..6870 +
1691679298.9823956-CDS-H-elongata_contig20428:6692..68701691679298.9823956-CDS-H-elongata_contig20428:6692..6870Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 6693..6870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20428.5813.1

>prot_H-elongata_contig20428.5813.1 ID=prot_H-elongata_contig20428.5813.1|Name=mRNA_H-elongata_contig20428.5813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
IRRVRSTVHLTGGTSAETKRRIIDLLAPAKSEVACTTSCSSSRPRSTAPP
SSSDLTVLEEGARCLEERLQNYPGALRDEDTDVDGTLNSFWKEDESIEGI
SEKSTGRQRQEGGRSSRFGEVGGGSIEVGDQNRNRSRNRSRVSSRSRSSN
ESSGKRPRGLFPVSICFGRPDIERFITNTVQGTAVTAEWVDTKVDSVARK
SSQPPSNYKHTPLRPIAQALVRLNTNQRISKKDLMSADLSVVKSKSAEVS
PSPLSYSFRTHLSSPH
back to top

mRNA from alignment at H-elongata_contig20428:4931..6870+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20428.5813.1 ID=mRNA_H-elongata_contig20428.5813.1|Name=mRNA_H-elongata_contig20428.5813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1940bp|location=Sequence derived from alignment at H-elongata_contig20428:4931..6870+ (Himanthalia elongata Himel1 dioecious)
ATACGCCGTGTCAGAAGCACAGTCCACCTCACCGGTGGCACAAGCGCCGA
GACGAAGAGAAGGATCATCGACCTCCTCGCTCCCGCGAAGTCGGAGGTGG
CCTGCACCACCTCTTGCTCGTCTTCTCGGCCTCGTTCGACCGCGCCACCG
TCGAGCTCCGACCTAACAGTGCTCGAGGAAGGCGCCCGTTGTCTCGAGGA
GAGGTTGCAAAACTACCCGGGAGCACTGAGAGACGAGGACACCGACGTCG
ACGGAACGTTAAACAGCTTCTGGAAAGAGGACGAATCGATAGAGGGCATC
AGCGAGAAATCTACTGGACGACAACGGCAAGAAGGGGGGAGGTCATCAAG
ATTTGGCGAAGTCGGTGGTGGCAGTATCGAGGTGTGCATGAATAGCACCG
ATGACGGCGACGACAACCACAAGCTTTCCAGTGCCGCGAGGTTGTTGGTA
ATACACGCTCCTCCAACACAGATGTTCAAATAATCAGAGCGCCCTCCGTA
AGGAGGAAACGTGCGCGGTGGCGCGGTAGTCTCACATGAAAAGCTTGCTC
TTTGGTGGCGGTTGCGTGCGGACCGATCAAAGAAACAAAAGCGTACCGAG
CAAGAACAAGCACGGCTGCGTCTTTTAGTTGTTCCACGCAGAGCAGAGCA
CACCAGCGCGGTGGAAAGCGTGCGGTATCATGGCGGTGCTTGCGATTGCA
CATCACCTTGATGAGGTACCTGATTCATCCACTGCGCAAAATATTGCTTT
GTTAACTGTTTTGTGTCTCAATGCTACGCATAATCTATCTCTGCCCAGTC
AGCACCGTCTCAATCGATATTCGCGCGCCTTCTCCTCCCTTCCGGCGGTT
GGCGACGAATGTGGCAGGAACCGCATCTCAACGATGACATTGAGGAGCGT
AGGCCGCACAGTCAGAGCAGTTCGCAGAGCAAAAGTAAGCACCAGAATAA
TGACAGTAGAGGAGACCAAAACCGCAACCGCAGCCGTAACCGCAGCCGTG
TCAGCAGCCGTTCACGAAGCAGCAACGAAAGCAGCGGAAAACGCCCCCGA
GGCTTATTCCCGGTATCGATCTGCTTCGGGAGGCCGGATATCGAGCGATT
CATCACAAACACTGTCCAGGGCACGGCCGTTACGGCGGAATGGGTGGATA
CCAAGGTGGATTCGGTGGCCAGAAAGAGCTCGCAGCCTCCTTCGAAGTTG
CAAAAGGTGCGTAGGTGCTACAAGTACTGTATTAGGCAAAATGATCCAAT
TATGGTAGTGCGTTCTCGAGAACATTGAGGAATATCGAAAGGACAAACGC
GCCAGCCAGCTGGAATCAACCTTCCCGGTTTGTACCGGTGAAGGTATCAC
CATGATTAAATATACCATAGCATGAGCATCCTATACGCTGTTCGCTTTGA
GAAGGGGAGGGCATTATTTGGCTTTCTCCCCCTTAGAGCGGGGAAAAGGG
TTTCCTTTATGGTCCTGAAAAATGTGGAAAAAGTGCCCAAGGACAGCCCT
ACGGTGGAAAACATTAAAAAAAGAAACACCATAGTTTATAGCTCTCCTAG
GGCAAGCTTCCTACAGAATAGGGGTGCGCACACGAACTCCAGTCTAGGGG
AAAATGTAATATAAACACAGCTTTTGTCCTCCCCTCCTCTTCACTCAACC
AGTCTTTCCCAATATTGTTTCGTTTTAATCACCCCCAGCTAGCATGCATA
TGCCTGAAAGAGATGATTCGCTTCATTTTGCGGTGGAGGCTAGGTTTTTA
CAGGCTTTAAAGCTACAAGCACACTCCCCTTCGCCCAATCGCACAGGCCC
TTGTGCGCCTTAACACGAATCAACGCATCTCAAAGAAGGATCTCATGAGT
GCCGACCTCTCCGTCGTGAAGTCCAAGTCTGCCGAGGTGAGTCCGTCGCC
GCTGTCTTACTCATTCCGGACCCACCTCTCATCTCCGCAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20428:4931..6870+

>mRNA_H-elongata_contig20428.5813.1 ID=mRNA_H-elongata_contig20428.5813.1|Name=mRNA_H-elongata_contig20428.5813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig20428:4931..6870+ (Himanthalia elongata Himel1 dioecious)
ATACGCCGTGTCAGAAGCACAGTCCACCTCACCGGTGGCACAAGCGCCGA
GACGAAGAGAAGGATCATCGACCTCCTCGCTCCCGCGAAGTCGGAGGTGG
CCTGCACCACCTCTTGCTCGTCTTCTCGGCCTCGTTCGACCGCGCCACCG
TCGAGCTCCGACCTAACAGTGCTCGAGGAAGGCGCCCGTTGTCTCGAGGA
GAGGTTGCAAAACTACCCGGGAGCACTGAGAGACGAGGACACCGACGTCG
ACGGAACGTTAAACAGCTTCTGGAAAGAGGACGAATCGATAGAGGGCATC
AGCGAGAAATCTACTGGACGACAACGGCAAGAAGGGGGGAGGTCATCAAG
ATTTGGCGAAGTCGGTGGTGGCAGTATCGAGGTATACGCCGTGTCAGAAG
CACAGTCCACCTCACCGGTGGCACAAGCGCCGAGACGAAGAGAAGGATCA
TCGACCTCCTCGCTCCCGCGAAGTCGGAGGTGGCCTGCACCACCTCTTGC
TCGTCTTCTCGGCCTCGTTCGACCGCGCCACCGTCGAGCTCCGACCTAAC
AGTGCTCGAGGAAGGCGCCCGTTGTCTCGAGGAGAGGTTGCAAAACTACC
CGGGAGCACTGAGAGACGAGGACACCGACGTCGACGGAACGTTAAACAGC
TTCTGGAAAGAGGACGAATCGATAGAGGGCATCAGCGAGAAATCTACTGG
ACGACAACGGCAAGAAGGGGGGAGGTCATCAAGATTTGGCGAAGTCGGTG
GTGGCAGTATCGAGGTAGGAGACCAAAACCGCAACCGCAGCCGTAACCGC
AGCCGTGTCAGCAGCCGTTCACGAAGCAGCAACGAAAGCAGCGGAAAACG
CCCCCGAGGCTTATTCCCGGTATCGATCTGCTTCGGGAGGCCGGATATCG
AGCGATTCATCACAAACACTGTCCAGGGCACGGCCGTTACGGCGGAATGG
GTGGATACCAAGGTGGATTCGGTGGCCAGAAAGAGCTCGCAGCCTCCTTC
GAAAGGAGACCAAAACCGCAACCGCAGCCGTAACCGCAGCCGTGTCAGCA
GCCGTTCACGAAGCAGCAACGAAAGCAGCGGAAAACGCCCCCGAGGCTTA
TTCCCGGTATCGATCTGCTTCGGGAGGCCGGATATCGAGCGATTCATCAC
AAACACTGTCCAGGGCACGGCCGTTACGGCGGAATGGGTGGATACCAAGG
TGGATTCGGTGGCCAGAAAGAGCTCGCAGCCTCCTTCGAACTACAAGCAC
ACTCCCCTTCGCCCAATCGCACAGGCCCTTGTGCGCCTTAACACGAATCA
ACGCATCTCAAAGAAGGATCTCATGAGTGCCGACCTCTCCGTCGTGAAGT
CCAAGTCTGCCGAGGTGAGTCCGTCGCCGCTGTCTTACTCATTCCGGACC
CACCTCTCATCTCCGCACCTACAAGCACACTCCCCTTCGCCCAATCGCAC
AGGCCCTTGTGCGCCTTAACACGAATCAACGCATCTCAAAGAAGGATCTC
ATGAGTGCCGACCTCTCCGTCGTGAAGTCCAAGTCTGCCGAGGTGAGTCC
GTCGCCGCTGTCTTACTCATTCCGGACCCACCTCTCATCTCCGCAC
back to top