mRNA_H-elongata_contig204097.5809.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 189 bits (480), Expect = 1.130e-55 Identity = 97/129 (75.19%), Postives = 111/129 (86.05%), Query Frame = 1
Query: 1 QSTQRANVGKS----RSSTGASQTPRTKR-SSTIYGMKEQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
Q+TQR+++G S RS T + PR KR ++ G KEQ+RAIKDAN+EAHSPKDWTPELT+ LRDLVDELGPKWS IA+K+PGKTATACMLHWRVG+NP+HMVKGSGTWTAEEDERLSKLVEVVGMK
Sbjct: 189 QNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPKWSNIADKMPGKTATACMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMK 317
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 188 bits (478), Expect = 7.340e-53 Identity = 97/129 (75.19%), Postives = 110/129 (85.27%), Query Frame = 1
Query: 1 QSTQRANVGKS----RSSTGASQTPRTKR-SSTIYGMKEQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
Q+TQ +++G S RS T + PR KR ++ G KEQ+RAIKDAN+EAHSPKDWTPELT+ LRDLVDELGPKWS IA+K+PGKTATACMLHWRVG+NPNHMVKGSGTWTAEEDERLSKLVEVVGMK
Sbjct: 927 QNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPKWSNIADKMPGKTATACMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 1055
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 6.870e-16 Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 100 EQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPK----WSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEV 360
E +A++ A +E + P DW E T+ L +LV++L W +IA P KT C+LHWR LN N +++G+GTW AEEDERL KL V
Sbjct: 292 EDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFPTKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPV 382
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 7.670e-16 Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query: 100 EQSRAIKDANLEAHSPKDWTPELTQCLRDLVDELGPK----WSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEV 360
E +A++ A +E + P DW E T+ L +LV++L W +IA P KT C+LHWR LN N +++G+GTW AEEDERL KL V
Sbjct: 421 EDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFPTKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPV 511
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: M1VG35_CYAM1 (MYB-related protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VG35_CYAM1) HSP 1 Score: 64.7 bits (156), Expect = 1.420e-9 Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 154 WTPELTQCLRDLVDELGP-KWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
WT Q L+ LV E GP +W+AIA K+PG+TA C LHWR L+P +WT EEDE+L LV G +
Sbjct: 196 WTYAEDQQLKALVKEQGPGRWTAIAAKLPGRTAKDCQLHWRRCLDPRI---SRSSWTIEEDEKLKMLVSRHGRR 266
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A067U0K4_GALM3 (Uncharacterized protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067U0K4_GALM3) HSP 1 Score: 64.3 bits (155), Expect = 2.210e-9 Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
WTP + L +L + GPKWSAIA +IPG+T AC +R L+PN WT EEDE L ++ +G K
Sbjct: 63 WTPSEDKMLLELYESFGPKWSAIARQIPGRTDDACSKRYREALDPNLK---KDQWTQEEDELLVEVYNRIGGK 132
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A409VXP2_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409VXP2_9AGAR) HSP 1 Score: 63.2 bits (152), Expect = 5.560e-9 Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
WTP+ + L +L D LGPKWSAIA +IPG+T AC +R L+P+ WT EED+ L +G K
Sbjct: 63 WTPDEDRMLIELYDHLGPKWSAIARQIPGRTDDACSKRYREALDPSLK---KDEWTPEEDDLLIDTYNRIGGK 132
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A0C2X9A2_AMAMK (Uncharacterized protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2X9A2_AMAMK) HSP 1 Score: 63.2 bits (152), Expect = 5.620e-9 Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVGMK 372
WTP+ + L +L + LGP+WSAIA +IPG+T AC +R L+P+ WT EED +L ++ + VG K
Sbjct: 66 WTPDEDRVLVELHEHLGPRWSAIAREIPGRTDDACSKRYREALDPSLK---KDEWTREEDAKLMEVYDRVGGK 135
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A2H4Z461_9AGAR (Putative homeodomain protein n=1 Tax=Volvariella volvacea TaxID=36659 RepID=A0A2H4Z461_9AGAR) HSP 1 Score: 63.2 bits (152), Expect = 5.680e-9 Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 154 WTPELTQCLRDLVDELGPKWSAIAEKIPGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLVEVVG 366
WT E + LR GPKWSAIA +IPG+T AC +R L+P+ + KGS W+AEED RL + +G
Sbjct: 72 WTAEEDELLRKFYMNYGPKWSAIAREIPGRTDDACSKRYREALDPS-LKKGS--WSAEEDARLQEAYSRIG 139
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Match: A0A8H6T7M3_MYCCL (Myb domain protein 4r1 n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6T7M3_MYCCL) HSP 1 Score: 62.8 bits (151), Expect = 7.450e-9 Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 1
Query: 151 DWTPELTQCLRDLVDELGPKWSAIAEKI-PGKTATACMLHWRVGLNPNHMVKGSGTWTAEEDERLSKLV 354
+WT E+ Q +RD V G W+ +A+ + P TA C HW L+P SGTWTAEEDERL K V
Sbjct: 221 NWTDEMDQRMRDAVGRYGQCWALVAKYVSPALTAAQCSSHWSRSLDP---ALRSGTWTAEEDERLKKAV 286 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204097.5809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig204097.5809.1 >prot_H-elongata_contig204097.5809.1 ID=prot_H-elongata_contig204097.5809.1|Name=mRNA_H-elongata_contig204097.5809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp QSTQRANVGKSRSSTGASQTPRTKRSSTIYGMKEQSRAIKDANLEAHSPKback to top mRNA from alignment at H-elongata_contig204097:185..1082+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig204097.5809.1 ID=mRNA_H-elongata_contig204097.5809.1|Name=mRNA_H-elongata_contig204097.5809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=898bp|location=Sequence derived from alignment at H-elongata_contig204097:185..1082+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig204097:185..1082+ >mRNA_H-elongata_contig204097.5809.1 ID=mRNA_H-elongata_contig204097.5809.1|Name=mRNA_H-elongata_contig204097.5809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig204097:185..1082+ (Himanthalia elongata Himel1 dioecious)back to top |