mRNA_H-elongata_contig204040.5806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204040.5806.1
Unique NamemRNA_H-elongata_contig204040.5806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A6H5JFP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP9_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.550e-13
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   22 VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            VW TNRAARAICK YN+VD+SRRSPSYE+RLFKY KRG
Sbjct:  771 VWATNRAARAICKRYNLVDVSRRSPSYESRLFKYGKRG 808
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: D7FIP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP8_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.400e-13
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   22 VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            VW TNRAARAICK YN+ D+SRRSPSYE+RLFKY KRG
Sbjct:  980 VWATNRAARAICKRYNLADVSRRSPSYESRLFKYGKRG 1017
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A2P6NRS9_9EUKA (Ankyrin repeat-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NRS9_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   19 KVWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            +VW T RAARAI K YN+V+++RRS SYE RLFKY+KRG
Sbjct:  599 RVWVTPRAARAIRKKYNLVNVTRRSTSYEYRLFKYAKRG 637
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A2P6NV60_9EUKA (Ankyrin repeat protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NV60_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.230e-8
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   19 KVWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            KVW T RA RA+   YN VD+ RRSPSYE RLFKY++RG
Sbjct:  284 KVWMTPRAHRALTHRYNTVDMERRSPSYEMRLFKYAQRG 322
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A2R5GMA6_9STRA (BTB/POZ domain-containing protein KCTD7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMA6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 23/38 (60.53%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   22 VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            VW   RA RAI +G+N++D++RRSP+YE+RL KY KRG
Sbjct:  435 VWALPRAIRAISRGFNLIDVARRSPTYESRLAKYGKRG 472
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A6B2KWG6_9EUKA (Poly [ADP-ribose] polymerase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWG6_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.460e-7
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   22 VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            VW   RAARAI   +N+VDLSRRS +YE+RL+KY+KRG
Sbjct:  910 VWALPRAARAIANKFNMVDLSRRSLTYESRLYKYAKRG 947
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: V9D2T0_9EURO (Uncharacterized protein n=2 Tax=Cladophialophora carrionii TaxID=86049 RepID=V9D2T0_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 AYFGK-VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            AY GK VW + RA  A     N +DLSRRSPSYENRL KYS+RG
Sbjct:  248 AYDGKQVWASPRALAAFMTQMNTIDLSRRSPSYENRLSKYSRRG 291
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: W9VMS3_9EURO (Uncharacterized protein n=1 Tax=Cladophialophora yegresii CBS 114405 TaxID=1182544 RepID=W9VMS3_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 AYFGK-VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            AY GK VW + RA  A     N +DLSRRSPSYENRL KYS+RG
Sbjct:  248 AYDGKQVWASPRALAAFMTQMNTIDLSRRSPSYENRLSKYSRRG 291
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A3M7N1B3_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 132003 TaxID=2249419 RepID=A0A3M7N1B3_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 1.990e-7
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 AYFGK-VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            AY G+ VW T RA RA     N +DL+RRSPSYENRL KYS RG
Sbjct:  886 AYDGQQVWATPRALRAFMTQVNTIDLTRRSPSYENRLSKYSHRG 929
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BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Match: A0A0C4E2E7_MAGP6 (Ankyrin repeat protein n=1 Tax=Magnaporthiopsis poae (strain ATCC 64411 / 73-15) TaxID=644358 RepID=A0A0C4E2E7_MAGP6)

HSP 1 Score: 53.9 bits (128), Expect = 3.730e-7
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    7 AYFGK-VWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG 135
            AY GK V+CT RA ++     N +DLSRRSPSYENRL KYS RG
Sbjct:  250 AYDGKQVYCTPRALQSFVTQINQIDLSRRSPSYENRLSKYSHRG 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204040.5806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFP9_9PHAE1.550e-1384.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIP8_ECTSI5.400e-1381.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2P6NRS9_9EUKA1.630e-869.23Ankyrin repeat-containing protein n=1 Tax=Planopro... [more]
A0A2P6NV60_9EUKA2.230e-866.67Ankyrin repeat protein n=1 Tax=Planoprotostelium f... [more]
A0A2R5GMA6_9STRA1.070e-760.53BTB/POZ domain-containing protein KCTD7 n=1 Tax=Ho... [more]
A0A6B2KWG6_9EUKA1.460e-765.79Poly [ADP-ribose] polymerase n=1 Tax=Arcella inter... [more]
V9D2T0_9EURO1.990e-763.64Uncharacterized protein n=2 Tax=Cladophialophora c... [more]
W9VMS3_9EURO1.990e-763.64Uncharacterized protein n=1 Tax=Cladophialophora y... [more]
A0A3M7N1B3_9EURO1.990e-763.64Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A0C4E2E7_MAGP63.730e-763.64Ankyrin repeat protein n=1 Tax=Magnaporthiopsis po... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204040contigH-elongata_contig204040:168..305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D7FIP8
KEGG koko:K04460
KEGG Pathwayko04010,map04010
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0007588,GO:0008150,GO:0008152,GO:0008465,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0019752,GO:0022607,GO:0030267,GO:0031406,GO:0032501,GO:0032787,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046487,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070402,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.9148264-CDS-H-elongata_contig204040:167..3051622930145.9148264-CDS-H-elongata_contig204040:167..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204040 168..305 -
1691679298.58982-CDS-H-elongata_contig204040:167..3051691679298.58982-CDS-H-elongata_contig204040:167..305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204040 168..305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204040.5806.1prot_H-elongata_contig204040.5806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204040 168..305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204040.5806.1

>prot_H-elongata_contig204040.5806.1 ID=prot_H-elongata_contig204040.5806.1|Name=mRNA_H-elongata_contig204040.5806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MYAYFGKVWCTNRAARAICKGYNVVDLSRRSPSYENRLFKYSKRG*
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mRNA from alignment at H-elongata_contig204040:168..305-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204040.5806.1 ID=mRNA_H-elongata_contig204040.5806.1|Name=mRNA_H-elongata_contig204040.5806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig204040:168..305- (Himanthalia elongata Himel1 dioecious)
ATGTATGCCTATTTTGGAAAGGTTTGGTGCACCAACCGTGCGGCGCGCGC
GATCTGCAAAGGATACAACGTGGTGGACCTGTCCCGCCGTAGTCCCTCTT
ACGAGAACCGCCTCTTCAAGTACAGCAAAAGGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig204040:168..305-

>mRNA_H-elongata_contig204040.5806.1 ID=mRNA_H-elongata_contig204040.5806.1|Name=mRNA_H-elongata_contig204040.5806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig204040:168..305- (Himanthalia elongata Himel1 dioecious)
ATGTATGCCTATTTTGGAAAGGTTTGGTGCACCAACCGTGCGGCGCGCGC
GATCTGCAAAGGATACAACGTGGTGGACCTGTCCCGCCGTAGTCCCTCTT
ACGAGAACCGCCTCTTCAAGTACAGCAAAAGGGGGTAAATGTATGCCTAT
TTTGGAAAGGTTTGGTGCACCAACCGTGCGGCGCGCGCGATCTGCAAAGG
ATACAACGTGGTGGACCTGTCCCGCCGTAGTCCCTCTTACGAGAACCGCC
TCTTCAAGTACAGCAAAAGGGGGTAA
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