mRNA_H-elongata_contig204.5805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204.5805.1
Unique NamemRNA_H-elongata_contig204.5805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.600e-24
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTR 306
            + AAGQ Y QT EF YLGG VN + DL+ +++ R   AW   R Y  EL+DRP     +KIR+L+AE +E +LY C+TWSP + HY TLR  HH  L R
Sbjct:  344 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLR 442
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5K2J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.710e-21
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            + A G ++ Q  +FVYLGG +  +  +  +++ R+  A   FR  +  +YDRP   + +K+R+L+AEV+ET+LY CVTW+ +   Y  LR AHH FL RC
Sbjct:  115 IDAVGMVFKQKKDFVYLGGKICQDGSIEGEINHRVQRAHACFRRNSQAMYDRPGGPLRLKVRLLQAEVVETLLYGCVTWNLKPAEYRKLRSAHHFFLLRC 214
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5L5J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 8.020e-21
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ Y QT+ FVYLG  ++ +     ++  R   AW  FR  +  +YDRP  +  +KIR+L+AEV+ET+LY C +WS  A HY  L   H  FLTRC
Sbjct:  108 VSAAGQSYKQTDRFVYLGRAISADGKADREITSRSCRAWKCFRRNSASMYDRPRANRPLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRC 207
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5K8E6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E6_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.260e-20
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ YNQT+ FVYLG  ++ +  +  ++  R   AW  +R  +  +YDR     ++KIR+L+AEV+ET+LY C +WS  A HY  L   H  FLTRC
Sbjct:  361 VSAAGQTYNQTDRFVYLGRTISADGKVDREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRC 460
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5JKH3_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH3_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.510e-20
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ Y QT+ FVYLG  ++ +     ++  R   AW  +R  +  +YDR     ++KIR+L+AEV+ET+LY C +WS  A HY  L   H  FL RC
Sbjct:   57 VSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLARC 156
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5K1L2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1L2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.630e-20
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    4 RKVSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            + +SAAGQ Y QT+ FVYLG  ++ +     ++  R   AW  +R  +  +YDR   + + KIR+L+AEV+ET+LY C +WS  A HY  L   H  FLTRC
Sbjct:   19 KMMSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASMYDRRRANRQRKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRC 120
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.640e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ Y QT+ FVYLG  +  +  +  ++  RI  AW  +R  +  +YDR   + ++KIR+L+AEV++T+LY C +WS  A HY  L   H  FLTRC
Sbjct:   38 VSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRC 137
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5KB07_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB07_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.230e-20
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ Y QT+ FVYLG  +  +  +  ++  RI  AW  +R  +  +YDR   + ++KIR+L+AEV++T+LY C +WS  A HY  L   H  FLTRC
Sbjct:   68 VSAAGQTYKQTDRFVYLGRTICADGKVDREITSRICRAWKCYRRNSTSMYDRKRANRQLKIRLLQAEVVQTLLYGCASWSLAAEHYTKLNGTHRQFLTRC 167
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5LP35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LP35_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.550e-20
Identity = 44/100 (44.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ Y QT+ FVYLG  ++ +     ++  R   AW  +R  +  +YD    + ++KIR+L AEV+ET+LY C +WS  A HY  L   H  FLTRC
Sbjct:   24 VSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRNSASIYDMRRANRQLKIRLLMAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRC 123
[Close]
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Match: A0A6H5L7Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.880e-20
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:   10 VSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTLELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFLTRC 309
            VSAAGQ Y QT+ FVYLG  ++ +     ++  R   AW  +R  +  +YDR     ++KIR+L+AEV+ET+LY C +WS  A HY  L   H  FLTRC
Sbjct:   28 VSAAGQTYKQTDRFVYLGRTISADGKADREITSRSCRAWKCYRRKSASMYDRRRVDRKLKIRLLQAEVVETLLYGCASWSLTAEHYTKLIGTHRQFLTRC 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204.5805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBT2_9PHAE1.600e-2450.51Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K2J8_9PHAE1.710e-2141.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J5_9PHAE8.020e-2147.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8E6_9PHAE1.260e-2046.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JKH3_9PHAE1.510e-2044.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1L2_9PHAE1.630e-2043.14Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KSH7_9PHAE1.640e-2045.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB07_9PHAE2.230e-2045.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LP35_9PHAE2.550e-2044.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7Y9_9PHAE2.880e-2045.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204contigH-elongata_contig204:23997..24314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.8742328-CDS-H-elongata_contig204:23996..243141622930145.8742328-CDS-H-elongata_contig204:23996..24314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204 23997..24314 +
1691679298.5810757-CDS-H-elongata_contig204:23996..243141691679298.5810757-CDS-H-elongata_contig204:23996..24314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204 23997..24314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204.5805.1prot_H-elongata_contig204.5805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204 23997..24314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204.5805.1

>prot_H-elongata_contig204.5805.1 ID=prot_H-elongata_contig204.5805.1|Name=mRNA_H-elongata_contig204.5805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
GRKVSAAGQLYNQTNEFVYLGGNVNHNTDLSIKVDRRIDNAWCNFREYTL
ELYDRPSDSMEIKIRMLKAEVLETMLYRCVTWSPRACHYDTLRRAHHSFL
TRCRP*
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mRNA from alignment at H-elongata_contig204:23997..24314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204.5805.1 ID=mRNA_H-elongata_contig204.5805.1|Name=mRNA_H-elongata_contig204.5805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig204:23997..24314+ (Himanthalia elongata Himel1 dioecious)
GGCCGAAAGGTATCAGCAGCCGGCCAATTGTACAACCAAACGAACGAGTT
TGTATACCTCGGGGGAAACGTCAACCACAACACTGACCTGTCCATCAAGG
TCGACAGGCGCATAGACAACGCATGGTGCAACTTCCGGGAATACACCCTC
GAACTATACGACCGACCCAGCGACTCCATGGAGATCAAAATCCGGATGCT
GAAAGCCGAGGTACTCGAGACAATGTTGTACCGCTGTGTCACGTGGAGTC
CGCGCGCGTGTCATTATGACACGCTGCGCCGAGCTCACCACAGCTTCTTG
ACTCGCTGTAGGCCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig204:23997..24314+

>mRNA_H-elongata_contig204.5805.1 ID=mRNA_H-elongata_contig204.5805.1|Name=mRNA_H-elongata_contig204.5805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig204:23997..24314+ (Himanthalia elongata Himel1 dioecious)
GGCCGAAAGGTATCAGCAGCCGGCCAATTGTACAACCAAACGAACGAGTT
TGTATACCTCGGGGGAAACGTCAACCACAACACTGACCTGTCCATCAAGG
TCGACAGGCGCATAGACAACGCATGGTGCAACTTCCGGGAATACACCCTC
GAACTATACGACCGACCCAGCGACTCCATGGAGATCAAAATCCGGATGCT
GAAAGCCGAGGTACTCGAGACAATGTTGTACCGCTGTGTCACGTGGAGTC
CGCGCGCGTGTCATTATGACACGCTGCGCCGAGCTCACCACAGCTTCTTG
ACTCGCTGTAGGCCCTGAGGCCGAAAGGTATCAGCAGCCGGCCAATTGTA
CAACCAAACGAACGAGTTTGTATACCTCGGGGGAAACGTCAACCACAACA
CTGACCTGTCCATCAAGGTCGACAGGCGCATAGACAACGCATGGTGCAAC
TTCCGGGAATACACCCTCGAACTATACGACCGACCCAGCGACTCCATGGA
GATCAAAATCCGGATGCTGAAAGCCGAGGTACTCGAGACAATGTTGTACC
GCTGTGTCACGTGGAGTCCGCGCGCGTGTCATTATGACACGCTGCGCCGA
GCTCACCACAGCTTCTTGACTCGCTGTAGGCCCTGA
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