mRNA_H-elongata_contig203865.5802.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: D8LAY0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY0_ECTSI) HSP 1 Score: 197 bits (502), Expect = 2.160e-59 Identity = 96/113 (84.96%), Postives = 106/113 (93.81%), Query Frame = 1
Query: 1 DPGYVTGINQADQINLERRVNFNELISPSSGTVDTTNVSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANLHVSWRR 339
DPGYV I++ADQ +LERRVNF+ELISPS+G VDTTNVSLYEALKSVIEWTGQVVNGLQ++QWQLLGYESKPDGQ DH+RPLYSMSNPNPVVN+IVRRYATDTMANLHV +R
Sbjct: 305 DPGYVASISRADQSSLERRVNFSELISPSTGPVDTTNVSLYEALKSVIEWTGQVVNGLQAVQWQLLGYESKPDGQPDHERPLYSMSNPNPVVNSIVRRYATDTMANLHVLLKR 417
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A6H5JP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP05_9PHAE) HSP 1 Score: 196 bits (498), Expect = 2.250e-56 Identity = 95/113 (84.07%), Postives = 105/113 (92.92%), Query Frame = 1
Query: 1 DPGYVTGINQADQINLERRVNFNELISPSSGTVDTTNVSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANLHVSWRR 339
DPGYV I++ADQ +LERRVNFNELISPS+G VDTTNVSLYEALKSVIEWTGQVV+GLQ++QWQLLGYESKPDGQ DH+RPLYSMSNPNPVVN+IVRRYATDTM NLHV +R
Sbjct: 317 DPGYVASISRADQSSLERRVNFNELISPSTGPVDTTNVSLYEALKSVIEWTGQVVSGLQAVQWQLLGYESKPDGQPDHERPLYSMSNPNPVVNSIVRRYATDTMTNLHVLLKR 429
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A836CR41_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR41_9STRA) HSP 1 Score: 101 bits (252), Expect = 9.290e-23 Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 1
Query: 73 LISPSSGTVDTTNVSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANLHVSWRR 339
L P ++ +LY ALKSVI+WTG VV GL ++QWQ LG+ESKPDG D++RPLY + NPNP+++ I+R+YA +TM NL V +R
Sbjct: 355 LADPGGAGDGSSGPALYHALKSVIQWTGTVVAGLTAMQWQQLGFESKPDGTPDYNRPLYKIQNPNPIIDGIIRQYANETMQNLLVLLKR 443
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A7S3YCP4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCP4_HETAK) HSP 1 Score: 84.7 bits (208), Expect = 9.680e-19 Identity = 36/71 (50.70%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 112 VSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANLH 324
+ LY+AL++V++WTG VV LQ ++WQ +GYE++PDG D RPL+SM NPN V+ ++ YA +TM +LH
Sbjct: 35 LGLYDALRNVLQWTGAVVQSLQELKWQPIGYEARPDGLPDRARPLHSMRNPNAAVDRLLDAYANETMHHLH 105
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: W7TUC1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUC1_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 7.160e-16 Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 118 LYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANL 321
L +AL +VI WT VVNGL +QWQL+GYESKPDG D ++PL+++ NPN V+ NI+ Y +TM L
Sbjct: 476 LMKALSNVISWTRTVVNGLYQLQWQLIGYESKPDGAPDVNKPLFNIQNPNAVITNILHTYRGETMEQL 543
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A7S1YP34_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YP34_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 1.320e-15 Identity = 35/85 (41.18%), Postives = 57/85 (67.06%), Query Frame = 1
Query: 73 LISPSSGTVDTTNVSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANLHV 327
L+ S T + L++A+K VI+WT +V+NGL +QWQ++GY + PDG D++RP +SM NPN ++N++ Y+ +T +L V
Sbjct: 402 LVDRSCRTDSVDPIRLHDAMKGVIQWTEEVINGLYPLQWQVIGYANFPDGSIDYNRPYHSMPNPNACISNVLSVYSNETREHLGV 486
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A7S2U6J5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6J5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.320e-14 Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 118 LYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDT 309
L EA+K VI WT +VVNGL +QWQ +GY PDG AD+ RP YSMSNPN ++ I+ Y+ T
Sbjct: 387 LREAMKGVISWTEEVVNGLHPLQWQHIGYAQFPDGSADYSRPNYSMSNPNACISKILSMYSETT 450
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A7S2UJ79_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ79_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.340e-14 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 79 SPSSGTVDTTNVSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANLH 324
S +SGT DT EA+K + +W+ +VV LQ +QWQ++GYE PDG D +RPLY MSNPN ++ + Y +D N++
Sbjct: 396 SITSGTPDTEE--FLEAIKGITQWSKEVVENLQDLQWQIIGYEQLPDGSFDSNRPLYKMSNPNERIDKLRSTYHSDVKHNMN 475
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A7S1VP05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VP05_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.670e-12 Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 1
Query: 118 LYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLYSMSNPNPVVNNIVRRYATDTMANL 321
L +A+K V++WT +VVNGL +QWQ++GY PDG D++RP +SM NPN + I+ Y+ T +L
Sbjct: 371 LRDAIKGVMQWTDEVVNGLYPLQWQVIGYAQNPDGSHDYNRPYHSMPNPNAHITRILSTYSESTRDHL 438
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Match: A0A3M6VI80_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VI80_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.080e-11 Identity = 36/98 (36.73%), Postives = 57/98 (58.16%), Query Frame = 1
Query: 76 ISPSSGTVDTTNVSLYEALKSVIEWTGQVVNGLQSIQWQLLGYESKPDGQADHDRPLY----------------SMSNPNPVVNNIVRRYATDTMANL 321
++P G ++ SL A++S++ WTG VVNGL ++WQ +GYESK DG+AD +RP+Y + + ++ N++ YATDTM +L
Sbjct: 346 VTPRVGGSPQSSNSLTGAMESILTWTGGVVNGLHQLEWQTVGYESKSDGRADPERPIYRCPACWRYKDVMTYETAQHDTKCLIANLLLTYATDTMGHL 443 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203865.5802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig203865.5802.1 >prot_H-elongata_contig203865.5802.1 ID=prot_H-elongata_contig203865.5802.1|Name=mRNA_H-elongata_contig203865.5802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp DPGYVTGINQADQINLERRVNFNELISPSSGTVDTTNVSLYEALKSVIEWback to top mRNA from alignment at H-elongata_contig203865:419..757- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig203865.5802.1 ID=mRNA_H-elongata_contig203865.5802.1|Name=mRNA_H-elongata_contig203865.5802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig203865:419..757- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig203865:419..757- >mRNA_H-elongata_contig203865.5802.1 ID=mRNA_H-elongata_contig203865.5802.1|Name=mRNA_H-elongata_contig203865.5802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig203865:419..757- (Himanthalia elongata Himel1 dioecious)back to top |