mRNA_H-elongata_contig203811.5799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203811.5799.1
Unique NamemRNA_H-elongata_contig203811.5799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: D8LIB3_ECTSI (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB3_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.240e-28
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            RDC+VIDSWVGRFPQAVTCFSPGSY NRPLQA   SNVF+AGDWV+GVDHGANGLSQ
Sbjct:  416 RDCKVIDSWVGRFPQAVTCFSPGSYVNRPLQAVRGSNVFVAGDWVKGVDHGANGLSQ 472
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A5J4XU83_9CHLO (Amine oxidase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XU83_9CHLO)

HSP 1 Score: 83.6 bits (205), Expect = 2.260e-17
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            R  QV+DS V R+  AVT FSPGSY +RPLQ +   NVF+AGDWVRG+DHGANGLSQ
Sbjct:  491 RSAQVVDSAVLRWSSAVTHFSPGSYASRPLQTTSLGNVFMAGDWVRGLDHGANGLSQ 547
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: I0Z4X3_COCSC (FAD/NAD(P)-binding domain-containing protein n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z4X3_COCSC)

HSP 1 Score: 82.8 bits (203), Expect = 4.030e-17
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   10 QVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            ++IDS V RFP+AVT FSPGSY +RPLQ +   NVF+AGDWV+GV HGANGLSQ
Sbjct:  379 RIIDSAVLRFPKAVTHFSPGSYASRPLQTTSFGNVFMAGDWVKGVPHGANGLSQ 432
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A8J4F5Z3_9CHLO (Amino_oxidase domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4F5Z3_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 4.210e-17
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            +  +V DS V RFP+AVT FSPGSY++RP QA+   NVF+AGDWV+GV HGANGLSQ
Sbjct:  490 KGAKVTDSIVLRFPKAVTHFSPGSYQHRPFQATTIPNVFMAGDWVKGVPHGANGLSQ 546
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A7J7QK55_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QK55_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-16
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            +D  V+DS V RFP+AVT FSPGSY +RP Q +   N F+AGDWV+GV HGANGLSQ
Sbjct:  404 KDANVVDSAVLRFPKAVTHFSPGSYASRPHQVTSIPNCFLAGDWVKGVSHGANGLSQ 460
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A2P6V4Q8_9CHLO (Amine oxidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4Q8_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.450e-16
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            RD +V+DS V RFP+AVT FSPGS + RP QA+   N+F+AGDWV+G+ HGANGLSQ
Sbjct:  419 RDAKVVDSAVLRFPRAVTHFSPGSAQWRPTQATSFGNLFLAGDWVKGLQHGANGLSQ 475
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A383VDW2_TETOB (Amino_oxidase domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VDW2_TETOB)

HSP 1 Score: 81.3 bits (199), Expect = 1.470e-16
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            +   V+DS V RFP+AVT FSPGSY +RP QA+   N F+AGDWV+GV HGANGLSQ
Sbjct:  478 KGATVVDSAVLRFPKAVTHFSPGSYASRPFQATSIPNCFLAGDWVKGVSHGANGLSQ 534
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A835Y9J8_9CHLO (Amino_oxidase domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y9J8_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.470e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            +  QV+DS V R+P+AVT FSPGSY  RP QA+   N+F+AGDWV+GV HGANGLSQ
Sbjct:  489 KSAQVVDSVVLRYPKAVTHFSPGSYPFRPFQATTIPNLFMAGDWVKGVPHGANGLSQ 545
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: D8TQS8_VOLCA (Amino_oxidase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQS8_VOLCA)

HSP 1 Score: 81.3 bits (199), Expect = 1.470e-16
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQ 171
            +  +V+DS V RF +AVT FSPGSY++RP QA+   NVF+AGDWV+GV HGANGLSQ
Sbjct:  526 KGAKVVDSIVLRFARAVTHFSPGSYQHRPFQATSIPNVFMAGDWVKGVPHGANGLSQ 582
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BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Match: A0A2J7ZY97_9CHLO (Phytoene dehydrogenase (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZY97_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 2.550e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   10 QVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDHGANGLSQV 174
            +VIDS V R+P+AVT FSPGSY +RP QA+   NV +AGDWV+GV HGANGLSQV
Sbjct:  402 KVIDSIVLRYPKAVTHFSPGSYPHRPFQATTIPNVVMAGDWVKGVPHGANGLSQV 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203811.5799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIB3_ECTSI3.240e-2887.72Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
A0A5J4XU83_9CHLO2.260e-1768.42Amine oxidase n=1 Tax=Trebouxia sp. A1-2 TaxID=260... [more]
I0Z4X3_COCSC4.030e-1770.37FAD/NAD(P)-binding domain-containing protein n=2 T... [more]
A0A8J4F5Z3_9CHLO4.210e-1766.67Amino_oxidase domain-containing protein n=3 Tax=Vo... [more]
A0A7J7QK55_9CHLO1.050e-1664.91Amino_oxidase domain-containing protein n=1 Tax=Sc... [more]
A0A2P6V4Q8_9CHLO1.450e-1664.91Amine oxidase n=1 Tax=Micractinium conductrix TaxI... [more]
A0A383VDW2_TETOB1.470e-1664.91Amino_oxidase domain-containing protein n=2 Tax=Te... [more]
A0A835Y9J8_9CHLO1.470e-1664.91Amino_oxidase domain-containing protein n=1 Tax=Ed... [more]
D8TQS8_VOLCA1.470e-1664.91Amino_oxidase domain-containing protein n=1 Tax=Vo... [more]
A0A2J7ZY97_9CHLO2.550e-1669.09Phytoene dehydrogenase (Fragment) n=1 Tax=Tetrabae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203811contigH-elongata_contig203811:464..637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue6.8e-23
Seed eggNOG ortholog2880.D8LIB3
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.358478-CDS-H-elongata_contig203811:463..6371622930145.358478-CDS-H-elongata_contig203811:463..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203811 464..637 +
1691679298.3689008-CDS-H-elongata_contig203811:463..6371691679298.3689008-CDS-H-elongata_contig203811:463..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203811 464..637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203811.5799.1prot_H-elongata_contig203811.5799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203811 464..637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203811.5799.1

>prot_H-elongata_contig203811.5799.1 ID=prot_H-elongata_contig203811.5799.1|Name=mRNA_H-elongata_contig203811.5799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
RDCQVIDSWVGRFPQAVTCFSPGSYENRPLQASPDSNVFIAGDWVRGVDH
GANGLSQV
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mRNA from alignment at H-elongata_contig203811:464..637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203811.5799.1 ID=mRNA_H-elongata_contig203811.5799.1|Name=mRNA_H-elongata_contig203811.5799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig203811:464..637+ (Himanthalia elongata Himel1 dioecious)
AGGGATTGCCAGGTGATTGACAGCTGGGTCGGGAGGTTTCCGCAGGCCGT
GACGTGCTTTAGCCCGGGGTCGTACGAGAACCGTCCCCTCCAGGCTTCGC
CGGACTCGAACGTGTTCATCGCCGGAGATTGGGTCAGGGGGGTAGACCAC
GGCGCGAACGGCCTCAGCCAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig203811:464..637+

>mRNA_H-elongata_contig203811.5799.1 ID=mRNA_H-elongata_contig203811.5799.1|Name=mRNA_H-elongata_contig203811.5799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig203811:464..637+ (Himanthalia elongata Himel1 dioecious)
AGGGATTGCCAGGTGATTGACAGCTGGGTCGGGAGGTTTCCGCAGGCCGT
GACGTGCTTTAGCCCGGGGTCGTACGAGAACCGTCCCCTCCAGGCTTCGC
CGGACTCGAACGTGTTCATCGCCGGAGATTGGGTCAGGGGGGTAGACCAC
GGCGCGAACGGCCTCAGCCAGGTTAGGGATTGCCAGGTGATTGACAGCTG
GGTCGGGAGGTTTCCGCAGGCCGTGACGTGCTTTAGCCCGGGGTCGTACG
AGAACCGTCCCCTCCAGGCTTCGCCGGACTCGAACGTGTTCATCGCCGGA
GATTGGGTCAGGGGGGTAGACCACGGCGCGAACGGCCTCAGCCAGGTT
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