mRNA_H-elongata_contig203657.5793.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203657.5793.1
Unique NamemRNA_H-elongata_contig203657.5793.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203657.5793.1 vs. uniprot
Match: D8LGH6_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGH6_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.480e-16
Identity = 35/44 (79.55%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ISVGFLKLDEHMMEKLPRYAQAYDVVIIGDGDVSYTNEILHEIV 132
            I+VGFLKLD H+++KLPRYAQAYDVVI+GDGD+SY NEILHE+V
Sbjct:  400 ITVGFLKLDGHVLDKLPRYAQAYDVVILGDGDMSYANEILHEVV 443
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BLAST of mRNA_H-elongata_contig203657.5793.1 vs. uniprot
Match: A0A836CLU8_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.800e-13
Identity = 27/45 (60.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 ISVGFLKLDEHMMEKLPRYAQAYDVVIIGDGDVSYTNEILHEIVD 135
            I+VGFLK++E  ++K PRYAQA+DVV++G+GD+SY NE+L+E+ D
Sbjct:  288 ITVGFLKMEEDFLDKFPRYAQAFDVVVVGNGDLSYVNELLYEVTD 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203657.5793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGH6_ECTSI1.480e-1679.555'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A836CLU8_9STRA7.800e-1360.005'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203657contigH-elongata_contig203657:937..1074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6e-14
Seed eggNOG ortholog2880.D8LGH6
Preferred nameNT5C3B
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
GOsGO:0000215,GO:0000287,GO:0000288,GO:0000291,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006152,GO:0006213,GO:0006401,GO:0006402,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008252,GO:0008253,GO:0009056,GO:0009057,GO:0009058,GO:0009116,GO:0009119,GO:0009123,GO:0009125,GO:0009158,GO:0009161,GO:0009164,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0016070,GO:0016071,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0034656,GO:0042278,GO:0042454,GO:0042578,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046085,GO:0046128,GO:0046130,GO:0046135,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0048519,GO:0050789,GO:0050896,GO:0051607,GO:0051704,GO:0051707,GO:0055086,GO:0060255,GO:0065007,GO:0071704,GO:0072521,GO:0072523,GO:0072527,GO:0072529,GO:0090304,GO:0098542,GO:0140098,GO:0140101,GO:1901068,GO:1901069,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901657,GO:1901658
EggNOG free text desc.Belongs to the pyrimidine 5'-nucleotidase family
EggNOG OGsKOG3128@1,KOG3128@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-16_004060.1
EC3.1.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.8789444-CDS-H-elongata_contig203657:936..10741622930144.8789444-CDS-H-elongata_contig203657:936..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203657 937..1074 +
1691679298.1418276-CDS-H-elongata_contig203657:936..10741691679298.1418276-CDS-H-elongata_contig203657:936..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203657 937..1074 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203657.5793.1prot_H-elongata_contig203657.5793.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203657 937..1074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203657.5793.1

>prot_H-elongata_contig203657.5793.1 ID=prot_H-elongata_contig203657.5793.1|Name=mRNA_H-elongata_contig203657.5793.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
ISVGFLKLDEHMMEKLPRYAQAYDVVIIGDGDVSYTNEILHEIVD*
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mRNA from alignment at H-elongata_contig203657:937..1074+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203657.5793.1 ID=mRNA_H-elongata_contig203657.5793.1|Name=mRNA_H-elongata_contig203657.5793.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig203657:937..1074+ (Himanthalia elongata Himel1 dioecious)
ATCAGCGTCGGGTTCCTTAAGCTCGACGAGCACATGATGGAGAAACTCCC
GCGGTACGCGCAAGCGTACGACGTGGTGATTATCGGTGACGGGGATGTAT
CGTACACGAACGAGATTTTGCACGAGATTGTGGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig203657:937..1074+

>mRNA_H-elongata_contig203657.5793.1 ID=mRNA_H-elongata_contig203657.5793.1|Name=mRNA_H-elongata_contig203657.5793.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig203657:937..1074+ (Himanthalia elongata Himel1 dioecious)
ATCAGCGTCGGGTTCCTTAAGCTCGACGAGCACATGATGGAGAAACTCCC
GCGGTACGCGCAAGCGTACGACGTGGTGATTATCGGTGACGGGGATGTAT
CGTACACGAACGAGATTTTGCACGAGATTGTGGACTGAATCAGCGTCGGG
TTCCTTAAGCTCGACGAGCACATGATGGAGAAACTCCCGCGGTACGCGCA
AGCGTACGACGTGGTGATTATCGGTGACGGGGATGTATCGTACACGAACG
AGATTTTGCACGAGATTGTGGACTGA
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