mRNA_H-elongata_contig203617.5792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203617.5792.1
Unique NamemRNA_H-elongata_contig203617.5792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203617.5792.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 9.850e-71
Identity = 126/208 (60.58%), Postives = 150/208 (72.12%), Query Frame = 1 
Query:    1 MFGNATKLVNAAPHRWISTCRVLEEVLRSWEALEKHYLDNGAGGNFPLAVHKTAIDELYSLMKPVALLIRNSQRSDGPTGLSTFIDLCTLQATTLDMEKPLLIKVPRKVRLGEASSDTAVT--KRTASSLQAVTTSTRRMLRDAIFKRFFNKRYDEAVFAVPEPSYVFEMEACMSPFLHDLKWLPKFCSSPEEADRVDKYIRTKVVDL 618
            ++G + KLVNA PHRWISTC VLEE+LRSW+ALE+HY  N  GG+FPLA HKT I+ELYSLMKP++++++ SQ    PTGLSTF  L  L+A TLD+ KPL + VPRKV   + +   A T  +R A SLQ VTT+TR ML  A+ KRFF+KRYD  V AVP   YVFEM ACMSP LH L WL   CSS EEA RV K I+ KVVDL
Sbjct:  404 LYGKSMKLVNAVPHRWISTCNVLEEILRSWQALEEHYQKNEQGGSFPLAQHKTVIEELYSLMKPISVIMKESQEKGLPTGLSTFAALVMLRADTLDVTKPLEVTVPRKVTTTDWARTLATTTIERPADSLQDVTTTTRTMLAAALDKRFFSKRYDANVVAVPPSDYVFEMAACMSPALHTLPWLTSMCSSDEEAGRVHKLIKGKVVDL 611
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BLAST of mRNA_H-elongata_contig203617.5792.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 7.150e-17
Identity = 65/205 (31.71%), Postives = 101/205 (49.27%), Query Frame = 1 
Query:   19 KLVNAAPHRWISTCRVLEEVLRSWEALEKHYLDNGAGGNFPLAVHKTAIDELYSLMKPVALLIRNSQRSDGPTGLSTFIDLCTLQATTLDMEKPLLIKVPRKVR-----LGEASSDTAVTKRTASSLQAVTTSTRRMLRDAIFKRFFNKRYDEAVFAVPEPSYVFEMEACMSPFLHDLKWLPKFCSSPEEADRVDKYIRTKVVDL 618
            KLVN AP RW     VLE  + +   ++  Y   G+    PLA H+  IDELYSL+KPVA LI   Q++  PTG +  + L TL+ +T +++  L +  P + +      G          R  + L  V    R  L  A+ +R+F++ Y  A  +     +VF+M+  + P   DL+++ K  S+   A  V K I  K++ L
Sbjct:  243 KLVNVAPQRWSGVSGVLEATIVNRVGIDGVYAREGSVN--PLAPHENEIDELYSLIKPVAELIVTCQQTHVPTGQAAVLGLATLKLSTFNVDARLDVLTPVRAQGWPEGTGGGERKATSVPRLHNHLTQVGRDAREHLASALDRRYFDRCYKSAD-SEKTTDFVFDMQMGLHPTTADLQYVDKLTSTEVHAAFVKKSITDKIIAL 444
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BLAST of mRNA_H-elongata_contig203617.5792.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 1.000e-16
Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 1 
Query:   19 KLVNAAPHRWISTCRVLEEVLRSWEALEKHYLDNGAGGNFPLAVHKTAIDELYSLMKPVALLIRNSQRSDGPTGLSTFIDLCTLQATTLDMEKPLLIKVPR-KVRLGE---ASSDTAVTKRTASSLQAVTTSTRRMLRDAIFKRFFNKRYDEAVFAVPEPSYVFEMEACMSPFLHDLKWLPKFCSSPEEADRVDKYIRTKVVDL 618
            K+VNAAP RW      LE  + +  A+   Y + G     PL+ H   IDELYSL++PVA +I   Q++  PTG +  + L  L+ +TL+ + PL I  P  K   G    A  +   T R    L  V    R  L  A+  R F+KRY   V        VF+M+  + P   DL+++ +   +   A  V K I  K++ L
Sbjct:  351 KVVNAAPQRWSGVTGALEATVTNRAAINGVYAEEGEDS--PLSPHVHEIDELYSLIQPVAEVIATCQQTHFPTGQAAVLGLAALKLSTLNADAPLDILTPASKPTQGATEGAGGEQRTTARAHKDLTRVGREAREHLASALHWRDFDKRYKSTV--AKSTGLVFDMQMGLHPCTADLQYVSRLAPTEGHAAVVKKNITDKIIAL 550
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BLAST of mRNA_H-elongata_contig203617.5792.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.250e-11
Identity = 61/200 (30.50%), Postives = 93/200 (46.50%), Query Frame = 1 
Query:   19 KLVNAAPHRWISTCRVLEEVLRSWEALEKHYLDNGAGGNFPLAVHKTAIDELYSLMKPVALLIRNSQRSDGPTGLSTFIDLCTLQATTLDMEKPLLIKVPRKVRLGEASSDTAVTKRTASSLQAVTTSTRRMLRDAIFKRFFNKRYDEAVFAVPEPSYVFEMEACMSPFLHDLKWLPKFCSSPEEADRVDKYIRTKVVDL 618
            KLVN AP RW     VLE  + +   ++  Y   G+    PLA H+  IDELYS++KPVA LI   Q++  PTG +  + L  L+ +T +++  L +  P + + G            A  ++   TS  R  + A          D A        +VF+M+  + P   DL+++ K  SS   A  V K I  K++ L
Sbjct:   69 KLVNVAPQRWSGVGGVLEATIVNRVDIDGVYAREGSVN--PLAPHEHDIDELYSVIKPVAELIVTYQQTHVPTGQAAALGLAALKLSTFNVDARLDVLTPARAQ-GRPEG--------AGGVEPKATSVPRCYKPA----------DSA----KTTDFVFDMQMGLHPTTADLQYVDKLASSKVHAAFVTKRITDKIITL 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203617.5792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE9.850e-7160.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI7.150e-1731.71Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LFP4_ECTSI1.000e-1632.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE4.250e-1130.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203617contigH-elongata_contig203617:430..1047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue4.6e-13
Seed eggNOG ortholog2880.D7G4Z8
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size618
Cds size618
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.8380146-CDS-H-elongata_contig203617:429..10471622930144.8380146-CDS-H-elongata_contig203617:429..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203617 430..1047 -
1691679298.132128-CDS-H-elongata_contig203617:429..10471691679298.132128-CDS-H-elongata_contig203617:429..1047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203617 430..1047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203617.5792.1prot_H-elongata_contig203617.5792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203617 430..1047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203617.5792.1

>prot_H-elongata_contig203617.5792.1 ID=prot_H-elongata_contig203617.5792.1|Name=mRNA_H-elongata_contig203617.5792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MFGNATKLVNAAPHRWISTCRVLEEVLRSWEALEKHYLDNGAGGNFPLAV
HKTAIDELYSLMKPVALLIRNSQRSDGPTGLSTFIDLCTLQATTLDMEKP
LLIKVPRKVRLGEASSDTAVTKRTASSLQAVTTSTRRMLRDAIFKRFFNK
RYDEAVFAVPEPSYVFEMEACMSPFLHDLKWLPKFCSSPEEADRVDKYIR
TKVVDL
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mRNA from alignment at H-elongata_contig203617:430..1047-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203617.5792.1 ID=mRNA_H-elongata_contig203617.5792.1|Name=mRNA_H-elongata_contig203617.5792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig203617:430..1047- (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCAACGCCACGAAGCTGGTGAACGCCGCCCCTCACCGCTGGAT
CTCTACCTGCAGGGTCCTGGAGGAAGTGCTTCGTAGCTGGGAGGCCCTGG
AGAAGCACTACCTCGACAACGGAGCGGGTGGCAACTTCCCTCTAGCCGTT
CACAAGACGGCCATCGACGAGCTGTACAGCTTGATGAAGCCGGTCGCACT
ACTGATCAGGAACAGTCAGCGGAGTGACGGGCCGACGGGGCTCAGCACCT
TCATCGACCTCTGCACGCTGCAGGCTACCACGCTCGACATGGAGAAGCCA
CTGCTCATCAAGGTCCCTCGCAAGGTGAGGTTGGGGGAAGCCAGCTCAGA
CACGGCAGTAACCAAGCGCACGGCATCAAGCCTCCAGGCCGTGACCACCA
GCACCCGAAGAATGCTTCGAGACGCCATCTTCAAGCGATTTTTCAACAAG
CGCTACGATGAGGCCGTCTTCGCCGTACCGGAGCCAAGCTACGTGTTTGA
GATGGAAGCGTGCATGAGCCCCTTCCTGCACGATCTCAAGTGGCTGCCGA
AGTTTTGCAGTAGTCCCGAGGAAGCGGACCGTGTTGACAAGTACATCCGG
ACGAAGGTGGTCGACCTG
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Coding sequence (CDS) from alignment at H-elongata_contig203617:430..1047-

>mRNA_H-elongata_contig203617.5792.1 ID=mRNA_H-elongata_contig203617.5792.1|Name=mRNA_H-elongata_contig203617.5792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig203617:430..1047- (Himanthalia elongata Himel1 dioecious)
ATGTTCGGCAACGCCACGAAGCTGGTGAACGCCGCCCCTCACCGCTGGAT
CTCTACCTGCAGGGTCCTGGAGGAAGTGCTTCGTAGCTGGGAGGCCCTGG
AGAAGCACTACCTCGACAACGGAGCGGGTGGCAACTTCCCTCTAGCCGTT
CACAAGACGGCCATCGACGAGCTGTACAGCTTGATGAAGCCGGTCGCACT
ACTGATCAGGAACAGTCAGCGGAGTGACGGGCCGACGGGGCTCAGCACCT
TCATCGACCTCTGCACGCTGCAGGCTACCACGCTCGACATGGAGAAGCCA
CTGCTCATCAAGGTCCCTCGCAAGGTGAGGTTGGGGGAAGCCAGCTCAGA
CACGGCAGTAACCAAGCGCACGGCATCAAGCCTCCAGGCCGTGACCACCA
GCACCCGAAGAATGCTTCGAGACGCCATCTTCAAGCGATTTTTCAACAAG
CGCTACGATGAGGCCGTCTTCGCCGTACCGGAGCCAAGCTACGTGTTTGA
GATGGAAGCGTGCATGAGCCCCTTCCTGCACGATCTCAAGTGGCTGCCGA
AGTTTTGCAGTAGTCCCGAGGAAGCGGACCGTGTTGACAAGTACATCCGG
ACGAAGGTGGTCGACCTGATGTTCGGCAACGCCACGAAGCTGGTGAACGC
CGCCCCTCACCGCTGGATCTCTACCTGCAGGGTCCTGGAGGAAGTGCTTC
GTAGCTGGGAGGCCCTGGAGAAGCACTACCTCGACAACGGAGCGGGTGGC
AACTTCCCTCTAGCCGTTCACAAGACGGCCATCGACGAGCTGTACAGCTT
GATGAAGCCGGTCGCACTACTGATCAGGAACAGTCAGCGGAGTGACGGGC
CGACGGGGCTCAGCACCTTCATCGACCTCTGCACGCTGCAGGCTACCACG
CTCGACATGGAGAAGCCACTGCTCATCAAGGTCCCTCGCAAGGTGAGGTT
GGGGGAAGCCAGCTCAGACACGGCAGTAACCAAGCGCACGGCATCAAGCC
TCCAGGCCGTGACCACCAGCACCCGAAGAATGCTTCGAGACGCCATCTTC
AAGCGATTTTTCAACAAGCGCTACGATGAGGCCGTCTTCGCCGTACCGGA
GCCAAGCTACGTGTTTGAGATGGAAGCGTGCATGAGCCCCTTCCTGCACG
ATCTCAAGTGGCTGCCGAAGTTTTGCAGTAGTCCCGAGGAAGCGGACCGT
GTTGACAAGTACATCCGGACGAAGGTGGTCGACCTG
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