mRNA_H-elongata_contig203602.5790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203602.5790.1
Unique NamemRNA_H-elongata_contig203602.5790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A835ZI76_9STRA (Aspartokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI76_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-14
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G SPDG+ITTLGRGGSDLTAT+IG+A+G DEVQV
Sbjct:  198 VAVVTGFIGHSPDGKITTLGRGGSDLTATVIGAAVGADEVQV 239
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A7S2A082_TRICV (Aspartokinase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A082_TRICV)

HSP 1 Score: 71.6 bits (174), Expect = 2.310e-13
Identity = 34/42 (80.95%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G+ P+G ITTLGRGGSDLTAT IG+AMG+DEVQV
Sbjct:  136 VAVVTGFIGKDPNGRITTLGRGGSDLTATAIGAAMGLDEVQV 177
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A448YZJ5_9STRA (AA_kinase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZJ5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.040e-12
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G  PDG ITTLGRGGSDLTAT IG+A+ +DEVQV
Sbjct:  296 VAVVTGFIGHDPDGRITTLGRGGSDLTATAIGAALNLDEVQV 337
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: D7FXQ9_ECTSI (Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ9_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.560e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGFLGQSP  +ITTLGRGGSDLTAT+IG A G DEVQV
Sbjct:  283 VAVVTGFLGQSPCKQITTLGRGGSDLTATVIGVACGADEVQV 324
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A6H5JA47_9PHAE (Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA47_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.580e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGFLGQSP  +ITTLGRGGSDLTAT+IG A G DEVQV
Sbjct:  306 VAVVTGFLGQSPCKQITTLGRGGSDLTATVIGVACGADEVQV 347
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A7S0LD77_9EUKA (Aspartokinase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LD77_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 9.400e-12
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAV+TGF+G+   G+ITTLGRGGSDLTAT+IG+A G DEVQV
Sbjct:   58 VAVITGFIGKDSAGDITTLGRGGSDLTATLIGAAAGYDEVQV 99
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A7S1GHX1_CYCTE (Aspartokinase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHX1_CYCTE)

HSP 1 Score: 66.6 bits (161), Expect = 1.380e-11
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G  P+ +ITTLGRGGSDLTAT IGSA+ +DE+QV
Sbjct:  135 VAVVTGFIGHDPNSKITTLGRGGSDLTATAIGSALRIDEIQV 176
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A7S4QZF3_9STRA (Aspartate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QZF3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.580e-11
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G  P+G ITTLGRGGSDLTAT IG+A  +DE+QV
Sbjct:  323 VAVVTGFIGHDPNGRITTLGRGGSDLTATAIGAACRLDEIQV 364
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A7S3PCD4_9STRA (Aspartate kinase n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCD4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.890e-11
Identity = 29/42 (69.05%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G  P+G+ITTLGRGGSDLTAT +G+++ +DE+QV
Sbjct:  292 VAVVTGFIGHEPNGKITTLGRGGSDLTATQLGASLKIDEIQV 333
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BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Match: A0A7S0GDA2_9STRA (Aspartokinase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GDA2_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.110e-11
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    1 VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQV 126
            VAVVTGF+G+  +G ITTLGRGGSDLTAT IGSA  +DE+QV
Sbjct:  153 VAVVTGFIGKDDNGRITTLGRGGSDLTATAIGSACDLDEIQV 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203602.5790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZI76_9STRA1.970e-1483.33Aspartokinase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S2A082_TRICV2.310e-1380.95Aspartokinase (Fragment) n=1 Tax=Trieres chinensis... [more]
A0A448YZJ5_9STRA1.040e-1278.57AA_kinase domain-containing protein n=1 Tax=Pseudo... [more]
D7FXQ9_ECTSI1.560e-1283.33Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5JA47_9PHAE1.580e-1283.33Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7S0LD77_9EUKA9.400e-1273.81Aspartokinase (Fragment) n=1 Tax=Coccolithus braar... [more]
A0A7S1GHX1_CYCTE1.380e-1173.81Aspartokinase n=1 Tax=Cyclophora tenuis TaxID=2168... [more]
A0A7S4QZF3_9STRA3.580e-1173.81Aspartate kinase n=1 Tax=Ditylum brightwellii TaxI... [more]
A0A7S3PCD4_9STRA4.890e-1169.05Aspartate kinase n=2 Tax=Amphora coffeiformis TaxI... [more]
A0A7S0GDA2_9STRA6.110e-1173.81Aspartokinase n=1 Tax=Proboscia inermis TaxID=4202... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203602contigH-elongata_contig203602:667..813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue5.6e-10
Seed eggNOG ortholog2880.D7FXQ9
Preferred nameHOM3
KEGG rclassRC00002,RC00043
KEGG koko:K00928
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.aspartate kinase activity
EggNOG OGsCOG0527@1,KOG0456@2759
EC2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.495392-CDS-H-elongata_contig203602:666..8131622930144.495392-CDS-H-elongata_contig203602:666..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203602 667..813 -
1691679298.0863101-CDS-H-elongata_contig203602:666..8131691679298.0863101-CDS-H-elongata_contig203602:666..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203602 667..813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203602.5790.1prot_H-elongata_contig203602.5790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203602 667..813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203602.5790.1

>prot_H-elongata_contig203602.5790.1 ID=prot_H-elongata_contig203602.5790.1|Name=mRNA_H-elongata_contig203602.5790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
VAVVTGFLGQSPDGEITTLGRGGSDLTATIIGSAMGVDEVQVGYIYSI*
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mRNA from alignment at H-elongata_contig203602:667..813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203602.5790.1 ID=mRNA_H-elongata_contig203602.5790.1|Name=mRNA_H-elongata_contig203602.5790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig203602:667..813- (Himanthalia elongata Himel1 dioecious)
GTTGCGGTGGTGACCGGGTTCTTGGGGCAGTCCCCCGATGGAGAGATCAC
CACGCTAGGGCGAGGAGGGTCGGATCTCACGGCAACGATCATCGGGAGCG
CTATGGGGGTCGATGAAGTGCAGGTCGGGTATATATATAGTATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig203602:667..813-

>mRNA_H-elongata_contig203602.5790.1 ID=mRNA_H-elongata_contig203602.5790.1|Name=mRNA_H-elongata_contig203602.5790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig203602:667..813- (Himanthalia elongata Himel1 dioecious)
GTTGCGGTGGTGACCGGGTTCTTGGGGCAGTCCCCCGATGGAGAGATCAC
CACGCTAGGGCGAGGAGGGTCGGATCTCACGGCAACGATCATCGGGAGCG
CTATGGGGGTCGATGAAGTGCAGGTCGGGTATATATATAGTATATAGGTT
GCGGTGGTGACCGGGTTCTTGGGGCAGTCCCCCGATGGAGAGATCACCAC
GCTAGGGCGAGGAGGGTCGGATCTCACGGCAACGATCATCGGGAGCGCTA
TGGGGGTCGATGAAGTGCAGGTCGGGTATATATATAGTATATAG
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