mRNA_H-elongata_contig203545.5786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203545.5786.1
Unique NamemRNA_H-elongata_contig203545.5786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: D8LTQ6_ECTSI (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTQ6_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.580e-19
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1
Query:    1 KAWKAFALSVTENTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQ 180
            KAWKAF+ SVT+NT T++RL+ LT+ SFSRPAPF+ER+ AQ K++ LPVLPTTTIGSFPQ
Sbjct:  402 KAWKAFSASVTDNTNTAKRLAGLTEASFSRPAPFKERVAAQQKSLKLPVLPTTTIGSFPQ 461          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: METE_BACVZ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=132 Tax=Bacilli TaxID=91061 RepID=METE_BACVZ)

HSP 1 Score: 67.0 bits (162), Expect = 1.880e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 KAWKAFALSVTENTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQ 180
            KA KAFA     N+A  E L+ LT++ FSRPA FEERL  Q++++ LP+LPTTTIGSFPQ
Sbjct:  383 KALKAFATGA--NSAQKEELNQLTEKDFSRPASFEERLALQNESLGLPLLPTTTIGSFPQ 440          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: A0A1E4TE11_9ASCO (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4TE11_9ASCO)

HSP 1 Score: 64.7 bits (156), Expect = 1.230e-10
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   25 SVTENTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQVRK 189
            S+T+N A  ERL+ +TD   SR +PF ERL AQ K +NLP+ PTTTIGSFPQ ++
Sbjct:  392 SITKNPAVRERLAKVTDADKSRKSPFPERLVAQKKNLNLPLFPTTTIGSFPQTKE 446          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: UPI00198129EE (hypothetical protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI00198129EE)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-9
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   67 LTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQ 180
            LT++ FSRPA FEERL  Q++++ LP+LPTTTIGSFPQ
Sbjct:    4 LTEKDFSRPASFEERLALQNESLGLPLLPTTTIGSFPQ 41          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: UPI00077A5B1F (5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase n=2 Tax=Bacillus atrophaeus TaxID=1452 RepID=UPI00077A5B1F)

HSP 1 Score: 62.0 bits (149), Expect = 1.100e-9
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   37 NTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQ 180
            N+   E L+ LT++ F RP PFEERL+ Q++++ LP+LPTTTIGSFPQ
Sbjct:  393 NSEQKEELNQLTEKDFKRPIPFEERLKIQNESLGLPLLPTTTIGSFPQ 440          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: METE_BACSU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=168 Tax=Bacteria TaxID=2 RepID=METE_BACSU)

HSP 1 Score: 60.8 bits (146), Expect = 2.800e-9
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   37 NTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQ 180
            N+   + L  LTD+ F RP PFEERL  Q++++ LP+LPTTTIGSFPQ
Sbjct:  393 NSEQKKELEQLTDKDFKRPIPFEERLALQNESLGLPLLPTTTIGSFPQ 440          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: A0A1R1QYW3_9BACI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=4 Tax=Bacillus TaxID=1386 RepID=A0A1R1QYW3_9BACI)

HSP 1 Score: 60.8 bits (146), Expect = 2.800e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   37 NTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQ 180
            NTA +E    LT+  F+RP  FEERL+ Q++++ LPVLPTTTIGSFPQ
Sbjct:  393 NTAFAEERDKLTEEDFARPTAFEERLRIQNESLGLPVLPTTTIGSFPQ 440          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: A0A2E7K1T1_9RICK (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7K1T1_9RICK)

HSP 1 Score: 60.5 bits (145), Expect = 3.830e-9
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query:   37 NTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQVRK 189
            N A  ERL+++ D+  +R APF ER++ Q   +NLPVLPTTTIGSFPQ ++
Sbjct:  401 NKAVKERLASVDDKMLNRKAPFAERIKGQEANLNLPVLPTTTIGSFPQTKE 451          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: UPI001922FC84 (5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase n=1 Tax=unclassified Enterococcus TaxID=2608891 RepID=UPI001922FC84)

HSP 1 Score: 59.7 bits (143), Expect = 7.150e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query:   28 VTENTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQVR 186
            V +N A +++L+ALT++ F R   +EER Q Q   +NLP+LPTTTIGSFPQ R
Sbjct:  379 VQKNEALADKLAALTEQDFHRQISYEERAQTQKIELNLPLLPTTTIGSFPQTR 431          
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Match: A0A0H4QFL4_9LACO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Companilactobacillus ginsenosidimutans TaxID=1007676 RepID=A0A0H4QFL4_9LACO)

HSP 1 Score: 59.3 bits (142), Expect = 9.780e-9
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   28 VTENTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVLPTTTIGSFPQVRK 189
            VTEN    ER++AL D SF R    E+R + Q K  NLP+LPTTTIGSFPQ ++
Sbjct:  379 VTENPKVHERVAALNDDSFVRHPSLEQRAEIQKKEFNLPLLPTTTIGSFPQTKE 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203545.5786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTQ6_ECTSI3.580e-1971.675-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACVZ1.880e-1160.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A1E4TE11_9ASCO1.230e-1058.185-methyltetrahydropteroyltriglutamate--homocystein... [more]
UPI00198129EE1.020e-968.42hypothetical protein n=1 Tax=Escherichia coli TaxI... [more]
UPI00077A5B1F1.100e-958.335-methyltetrahydropteroyltriglutamate-- homocystei... [more]
METE_BACSU2.800e-958.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A1R1QYW3_9BACI2.800e-960.425-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A2E7K1T1_9RICK3.830e-954.905-methyltetrahydropteroyltriglutamate--homocystein... [more]
UPI001922FC847.150e-954.725-methyltetrahydropteroyltriglutamate-- homocystei... [more]
A0A0H4QFL4_9LACO9.780e-955.565-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203545contigH-elongata_contig203545:566..754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D8LTQ6
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00549
KEGG ReactionR04405,R09365
KEGG Pathwayko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230
KEGG ModuleM00017
EggNOG free text desc.5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
EggNOG OGsCOG0620@1,KOG2263@2759
EC2.1.1.14
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s3_g10761_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.1562667-CDS-H-elongata_contig203545:565..7541622930144.1562667-CDS-H-elongata_contig203545:565..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203545 566..754 -
1691679297.9735737-CDS-H-elongata_contig203545:565..7541691679297.9735737-CDS-H-elongata_contig203545:565..754Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203545 566..754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203545.5786.1prot_H-elongata_contig203545.5786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203545 566..754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203545.5786.1

>prot_H-elongata_contig203545.5786.1 ID=prot_H-elongata_contig203545.5786.1|Name=mRNA_H-elongata_contig203545.5786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
KAWKAFALSVTENTATSERLSALTDRSFSRPAPFEERLQAQSKAMNLPVL
PTTTIGSFPQVRK
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mRNA from alignment at H-elongata_contig203545:566..754-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203545.5786.1 ID=mRNA_H-elongata_contig203545.5786.1|Name=mRNA_H-elongata_contig203545.5786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig203545:566..754- (Himanthalia elongata Himel1 dioecious)
AAGGCTTGGAAGGCGTTTGCTTTGAGCGTCACCGAGAACACTGCCACGTC GGAGCGCCTAAGCGCTCTCACCGATCGGTCTTTTTCACGGCCGGCTCCTT TCGAAGAGCGCCTCCAGGCCCAGTCGAAGGCTATGAACCTCCCTGTTCTG CCAACTACCACGATCGGATCGTTCCCGCAGGTGCGAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig203545:566..754-

>mRNA_H-elongata_contig203545.5786.1 ID=mRNA_H-elongata_contig203545.5786.1|Name=mRNA_H-elongata_contig203545.5786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig203545:566..754- (Himanthalia elongata Himel1 dioecious)
AAGGCTTGGAAGGCGTTTGCTTTGAGCGTCACCGAGAACACTGCCACGTC
GGAGCGCCTAAGCGCTCTCACCGATCGGTCTTTTTCACGGCCGGCTCCTT
TCGAAGAGCGCCTCCAGGCCCAGTCGAAGGCTATGAACCTCCCTGTTCTG
CCAACTACCACGATCGGATCGTTCCCGCAGGTGCGAAAAAAGGCTTGGAA
GGCGTTTGCTTTGAGCGTCACCGAGAACACTGCCACGTCGGAGCGCCTAA
GCGCTCTCACCGATCGGTCTTTTTCACGGCCGGCTCCTTTCGAAGAGCGC
CTCCAGGCCCAGTCGAAGGCTATGAACCTCCCTGTTCTGCCAACTACCAC
GATCGGATCGTTCCCGCAGGTGCGAAAA
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