mRNA_H-elongata_contig203510.5781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203510.5781.1
Unique NamemRNA_H-elongata_contig203510.5781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: D7G0F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F6_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.560e-36
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ
Sbjct:   15 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 68
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A6H5J8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8A0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.080e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ
Sbjct:   15 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 68
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A835Z6J2_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.410e-27
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    4 WKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            W+ DFEKNVVVSNF RRGWTKT+GDDWN+YWANVY+VKQLFNPETG RL DDQ
Sbjct:   11 WRADFEKNVVVSNFARRGWTKTEGDDWNIYWANVYNVKQLFNPETGQRLRDDQ 63
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A2P4XLN3_9STRA (Tubulin-tyrosine ligase family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XLN3_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.500e-22
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            RW+VD EKNVVV NFERRGWTKT+GDDWN+YWA+  S+K +FNPETG RL D Q
Sbjct:  160 RWRVDAEKNVVVWNFERRGWTKTEGDDWNIYWASKTSIKNMFNPETGIRLVDGQ 213
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A067BKD1_SAPPC (Uncharacterized protein n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BKD1_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 3.130e-22
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            +WKVD EK+VVV NFERRGW +TDG+DWNVYWAN  S+K +FNPE+G RLGD Q
Sbjct:   11 KWKVDSEKHVVVWNFERRGWQRTDGNDWNVYWANKVSIKSMFNPESGIRLGDGQ 64
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A6A3WFX3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3WFX3_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.340e-22
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    4 WKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            W+VD EKNVVV NFERRGWTKT+GDDWN++WAN  ++K +FNPE G RL D Q
Sbjct:   16 WRVDSEKNVVVWNFERRGWTKTEGDDWNIFWANKTTIKNMFNPENGVRLVDGQ 68
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: G5A1Y3_PHYSP (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=G5A1Y3_PHYSP)

HSP 1 Score: 95.9 bits (237), Expect = 6.670e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            RW+VD EKNVVV NFERRGWTKT+GDDWN+YWAN  ++K +FNPE G RL D Q
Sbjct:   43 RWRVDSEKNVVVWNFERRGWTKTEGDDWNIYWANKTAIKNMFNPENGVRLVDGQ 96
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A7S3MKX9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3MKX9_9SPIT)

HSP 1 Score: 90.9 bits (224), Expect = 6.860e-22
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGD-DWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            +WK DF+K+V+  NFE+RGW K  GD DWN+YWAN ++VKQ+FNPETGFRLG+ Q
Sbjct:    8 KWKSDFDKSVLTLNFEKRGWVKATGDEDWNIYWANPWTVKQIFNPETGFRLGETQ 62
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A7S3JFN2_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JFN2_9SPIT)

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-21
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTK-TDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            +WK DF+K  ++ NFE+RGW K T  DDWN+YWANV++VKQ+FNPETG RLG+ Q
Sbjct:    8 KWKSDFDKQCIIHNFEKRGWLKCTSDDDWNIYWANVWNVKQIFNPETGHRLGETQ 62
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BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Match: A0A418FU72_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FU72_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.370e-21
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRLGDDQ 162
            +WKVD EK+VVV NFERRGW KT+G DWN+YWAN  S+K +FNPE G RL D Q
Sbjct:    6 KWKVDSEKHVVVWNFERRGWQKTEGSDWNIYWANKQSIKSMFNPENGVRLTDGQ 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203510.5781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0F6_ECTSI3.560e-36100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8A0_9PHAE1.080e-32100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6J2_9STRA8.410e-2784.91Tubulin-tyrosine ligase family-domain-containing p... [more]
A0A2P4XLN3_9STRA2.500e-2274.07Tubulin-tyrosine ligase family n=1 Tax=Phytophthor... [more]
A0A067BKD1_SAPPC3.130e-2272.22Uncharacterized protein n=10 Tax=Saprolegniaceae T... [more]
A0A6A3WFX3_9STRA6.340e-2269.81Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
G5A1Y3_PHYSP6.670e-2272.22Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A7S3MKX9_9SPIT6.860e-2265.45Hypothetical protein (Fragment) n=1 Tax=Favella eh... [more]
A0A7S3JFN2_9SPIT1.300e-2163.64Hypothetical protein (Fragment) n=1 Tax=Euplotes h... [more]
A0A418FU72_9STRA1.370e-2168.52Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203510contigH-elongata_contig203510:445..1063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue4.3e-27
Seed eggNOG ortholog2880.D7G0F6
KEGG koko:K16599,ko:K16603
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016874,GO:0016879,GO:0016881,GO:0018095,GO:0018193,GO:0018200,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0070739,GO:0070740,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein polyglycylation
EggNOG OGsKOG2157@1,KOG2157@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionpredicted tubulin-tyrosin ligase
Ec32 orthologEc-02_000590.1
Exons2
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.6610868-CDS-H-elongata_contig203510:444..5611622930143.6610868-CDS-H-elongata_contig203510:444..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203510 445..561 -
1691679297.7917397-CDS-H-elongata_contig203510:444..5611691679297.7917397-CDS-H-elongata_contig203510:444..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203510 445..561 -
1622930143.6851351-CDS-H-elongata_contig203510:1015..10631622930143.6851351-CDS-H-elongata_contig203510:1015..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203510 1016..1063 -
1691679297.8116276-CDS-H-elongata_contig203510:1015..10631691679297.8116276-CDS-H-elongata_contig203510:1015..1063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203510 1016..1063 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203510.5781.1prot_H-elongata_contig203510.5781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203510 445..1063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203510.5781.1

>prot_H-elongata_contig203510.5781.1 ID=prot_H-elongata_contig203510.5781.1|Name=mRNA_H-elongata_contig203510.5781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
RWKVDFEKNVVVSNFERRGWTKTDGDDWNVYWANVYSVKQLFNPETGFRL
GDDQ*
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mRNA from alignment at H-elongata_contig203510:445..1063-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203510.5781.1 ID=mRNA_H-elongata_contig203510.5781.1|Name=mRNA_H-elongata_contig203510.5781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=619bp|location=Sequence derived from alignment at H-elongata_contig203510:445..1063- (Himanthalia elongata Himel1 dioecious)
AGGTGGAAGGTGGATTTCGAAAAGAACGTGGTTGTGTCCAACTTTGAGGT
GAGGAAAAAAACAACACTCGCCCACCCGCGGTGGTAGCGTGCCAGGGGTC
TAGCAACCGGTGGGGCGATTTTAATGAAAACATTAGCGGAAATAACGTTG
GAGAGTTTCTTAGAACGACCGGCCGCCGTCTGACGCGTGCCAAGGGTCTT
CTTTTCATTTTTTTCTCTCAAATTTTTCCACAGTGTCAGACGCTTCTCAA
AATCCACCACTACGATATTTGTTCCGTATCGCATGCCTCCGGCAGGGGTC
GTTCTGTCTCGTCCCCTATTCTAATATATCTCATTCGATTCCGCTATTTT
GTCGCATATGCTAACTGTCGACCGTCATCCTCTCACAGGCAAATCTCTCT
ACGTCAAATGTTCCCTTAAAAAGTCCCTTCGGCATACGGGTTATTCTGTC
CTGTCACATATCGTTCCGTTTTGTCATATTTTATTCCGCCATCCTCTATC
AGAGAAGAGGGTGGACGAAGACTGACGGGGACGACTGGAACGTGTACTGG
GCCAATGTCTACAGCGTTAAGCAACTCTTCAATCCGGAGACTGGGTTCCG
GCTGGGAGACGATCAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig203510:445..1063-

>mRNA_H-elongata_contig203510.5781.1 ID=mRNA_H-elongata_contig203510.5781.1|Name=mRNA_H-elongata_contig203510.5781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig203510:445..1063- (Himanthalia elongata Himel1 dioecious)
AGGTGGAAGGTGGATTTCGAAAAGAACGTGGTTGTGTCCAACTTTGAGAG
GTGGAAGGTGGATTTCGAAAAGAACGTGGTTGTGTCCAACTTTGAGAGAA
GAGGGTGGACGAAGACTGACGGGGACGACTGGAACGTGTACTGGGCCAAT
GTCTACAGCGTTAAGCAACTCTTCAATCCGGAGACTGGGTTCCGGCTGGG
AGACGATCAGTGAAGAAGAGGGTGGACGAAGACTGACGGGGACGACTGGA
ACGTGTACTGGGCCAATGTCTACAGCGTTAAGCAACTCTTCAATCCGGAG
ACTGGGTTCCGGCTGGGAGACGATCAGTGA
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