mRNA_H-elongata_contig20344.5778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20344.5778.1
Unique NamemRNA_H-elongata_contig20344.5778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20344.5778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20344contigH-elongata_contig20344:5898..6281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20344.5778.1prot_H-elongata_contig20344.5778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20344 5917..6264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.5131502-UTR-H-elongata_contig20344:5897..59161622930143.5131502-UTR-H-elongata_contig20344:5897..5916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20344 5898..5916 +
1691679297.7415428-UTR-H-elongata_contig20344:5897..59161691679297.7415428-UTR-H-elongata_contig20344:5897..5916Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20344 5898..5916 +
1622930143.539033-UTR-H-elongata_contig20344:6264..62811622930143.539033-UTR-H-elongata_contig20344:6264..6281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20344 6265..6281 +
1691679297.7611175-UTR-H-elongata_contig20344:6264..62811691679297.7611175-UTR-H-elongata_contig20344:6264..6281Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20344 6265..6281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.5267513-CDS-H-elongata_contig20344:5916..62641622930143.5267513-CDS-H-elongata_contig20344:5916..6264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20344 5917..6264 +
1691679297.7529812-CDS-H-elongata_contig20344:5916..62641691679297.7529812-CDS-H-elongata_contig20344:5916..6264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20344 5917..6264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20344.5778.1

>prot_H-elongata_contig20344.5778.1 ID=prot_H-elongata_contig20344.5778.1|Name=mRNA_H-elongata_contig20344.5778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MMFFVHSAIFQYFPLHSKLLLTYLFSKPVDPHILYSIKTPSERLRKLLRR
ESRPFPTSPPYRLDVIYAAPIFSQACVALNSSTFIFHHPNESVVWVVGWW
GNRGFTPRGCVLSTL*
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mRNA from alignment at H-elongata_contig20344:5898..6281+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20344.5778.1 ID=mRNA_H-elongata_contig20344.5778.1|Name=mRNA_H-elongata_contig20344.5778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig20344:5898..6281+ (Himanthalia elongata Himel1 dioecious)
CCCCTTCGTGCGTAAACACATGATGTTTTTCGTACATTCTGCCATATTCC
AGTATTTTCCACTTCATTCCAAACTTCTCTTAACATACTTATTTTCAAAG
CCTGTTGATCCGCACATACTGTATTCTATAAAAACGCCTTCTGAACGTCT
AAGAAAACTACTACGCCGAGAGTCTCGCCCTTTCCCGACCTCGCCTCCCT
ATCGCCTAGACGTGATCTACGCAGCTCCTATTTTTTCTCAGGCCTGCGTG
GCCCTAAACAGTTCTACTTTTATTTTCCATCACCCCAATGAGTCTGTGGT
CTGGGTGGTGGGGTGGTGGGGGAACAGGGGATTTACTCCACGGGGATGCG
TTCTCTCCACGCTTTGAGTTACTGCCCTCTCTCC
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Coding sequence (CDS) from alignment at H-elongata_contig20344:5898..6281+

>mRNA_H-elongata_contig20344.5778.1 ID=mRNA_H-elongata_contig20344.5778.1|Name=mRNA_H-elongata_contig20344.5778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig20344:5898..6281+ (Himanthalia elongata Himel1 dioecious)
ATGATGTTTTTCGTACATTCTGCCATATTCCAGTATTTTCCACTTCATTC
CAAACTTCTCTTAACATACTTATTTTCAAAGCCTGTTGATCCGCACATAC
TGTATTCTATAAAAACGCCTTCTGAACGTCTAAGAAAACTACTACGCCGA
GAGTCTCGCCCTTTCCCGACCTCGCCTCCCTATCGCCTAGACGTGATCTA
CGCAGCTCCTATTTTTTCTCAGGCCTGCGTGGCCCTAAACAGTTCTACTT
TTATTTTCCATCACCCCAATGAGTCTGTGGTCTGGGTGGTGGGGTGGTGG
GGGAACAGGGGATTTACTCCACGGGGATGCGTTCTCTCCACGCTTTGAAT
GATGTTTTTCGTACATTCTGCCATATTCCAGTATTTTCCACTTCATTCCA
AACTTCTCTTAACATACTTATTTTCAAAGCCTGTTGATCCGCACATACTG
TATTCTATAAAAACGCCTTCTGAACGTCTAAGAAAACTACTACGCCGAGA
GTCTCGCCCTTTCCCGACCTCGCCTCCCTATCGCCTAGACGTGATCTACG
CAGCTCCTATTTTTTCTCAGGCCTGCGTGGCCCTAAACAGTTCTACTTTT
ATTTTCCATCACCCCAATGAGTCTGTGGTCTGGGTGGTGGGGTGGTGGGG
GAACAGGGGATTTACTCCACGGGGATGCGTTCTCTCCACGCTTTGA
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