mRNA_H-elongata_contig20336.5776.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20336.5776.1
Unique NamemRNA_H-elongata_contig20336.5776.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20336.5776.1 vs. uniprot
Match: A0A6H5L4W1_9PHAE (PARP-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W1_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.880e-27
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 3 
Query:  627 NPSWRKLERDSYVIVSA-AKGTARCGVCQSKIKRGEIKLGVFYTHEDKFTLVRWYHRRCVIAPECLKNSMDLCGIEDLRGDDLEVVLRWL--GVVGPVKERVWSA 932
            NP W++L  + +VI  A   G  RC  C  KI  G+++LG FY HED+FTL+RW+H+ CV APECL + MDLCGIEDL  +D++ V RWL  G  GPVK+R W+A
Sbjct:   65 NP-WKELAPEDFVIGYARGLGRVRCSSCGCKISAGQLQLGAFYMHEDRFTLLRWHHQSCVDAPECLTSPMDLCGIEDLSPEDVDEVCRWLAHGRSGPVKDRTWTA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20336.5776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4W1_9PHAE2.880e-2753.33PARP-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20336contigH-elongata_contig20336:661..5291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_004740.2
Exons2
Model size3183
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20336.5776.1prot_H-elongata_contig20336.5776.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20336 2909..4728 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.2264445-UTR-H-elongata_contig20336:660..29081622930143.2264445-UTR-H-elongata_contig20336:660..2908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20336 661..2908 -
1691679297.6177-UTR-H-elongata_contig20336:660..29081691679297.6177-UTR-H-elongata_contig20336:660..2908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20336 661..2908 -
1622930143.2939458-UTR-H-elongata_contig20336:4728..52911622930143.2939458-UTR-H-elongata_contig20336:4728..5291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20336 4729..5291 -
1691679297.641623-UTR-H-elongata_contig20336:4728..52911691679297.641623-UTR-H-elongata_contig20336:4728..5291Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20336 4729..5291 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.2573185-CDS-H-elongata_contig20336:2908..31061622930143.2573185-CDS-H-elongata_contig20336:2908..3106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20336 2909..3106 -
1691679297.6251168-CDS-H-elongata_contig20336:2908..31061691679297.6251168-CDS-H-elongata_contig20336:2908..3106Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20336 2909..3106 -
1622930143.2712002-CDS-H-elongata_contig20336:4554..47281622930143.2712002-CDS-H-elongata_contig20336:4554..4728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20336 4555..4728 -
1691679297.6333997-CDS-H-elongata_contig20336:4554..47281691679297.6333997-CDS-H-elongata_contig20336:4554..4728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20336 4555..4728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20336.5776.1

>prot_H-elongata_contig20336.5776.1 ID=prot_H-elongata_contig20336.5776.1|Name=mRNA_H-elongata_contig20336.5776.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MAAVATRNSSSTKKSTLKKPTNPSWRKLERDSYVIVSAAKGTARCGVCQS
KIKRGEIKLGVFYTHEDKFTLVRWYHRRCVIAPECLKNSMDLCGIEDLRG
DDLEVVLRWLGVVGPVKERVWSA*
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mRNA from alignment at H-elongata_contig20336:661..5291-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20336.5776.1 ID=mRNA_H-elongata_contig20336.5776.1|Name=mRNA_H-elongata_contig20336.5776.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4631bp|location=Sequence derived from alignment at H-elongata_contig20336:661..5291- (Himanthalia elongata Himel1 dioecious)
AACGGTCTCTTCCAACCAATACCCAATACGCCCCTCTGATGAATTAATAA
TGGCGACGAAAGAGCGTCGGTATAAATCCACGAATTGAATCAGTTTGTTC
TTACACCCACCCAGTAGCGGAGCAAACAACACTCCATGCTCTTCCCCCCC
TCCGCTCCCTCCCCACAAAGACTAACCGATTGATACTACTACTCTCCCTT
TACGGTGTCTCGTTATAACCATAAGCATCATCTACCACATAATTATTGCC
GGAGAGCAACCAAACTCATCGTACACCGTCGATCAGCTAGGTCACCCAAC
ACACCCGTCGGCCAGGTCAGACCCAGCCGCGTTCTATTAATAGGTGCGAT
CGGAATATTAGCAATACTAGCATTGGAATAAAGGTAGAAGGCTATATTTC
CGGGCGCCTACTACCTGGCTGTGGCAGCAGCAGCAGACATTCATATCAAG
AGCAGCAGCAGCGAGAGAAGCAGGAACATCAGAACGAACATCGCAGTGGT
ACATCCAATCCGCTAAAAATCTCATTTGAGTGACAGAACCCTCCGCTGCG
AAGGGAAAACCGCATGGCTGCAGTGGCCACTCGGAACTCGTCATCTACAA
AAAAATCAACCTTGAAGAAGCCGACCAATCCATCGTGGAGAAAGCTTGAA
CGCGACAGTTACGTGATCGTTTCAGCAGCCAAAGGCACAGCGCGCTGCGG
TGTATGCCAATCCAAGATAAAGCGGGGCGAGATCAAGGTGAGCTGACTGG
GTTGTTGGTATCCCGCTTGCTTACAACAACTTAAATTTACAGTTTGGCTT
GAACATACGATATACATACATACATACATACATAAATATAGACATATATA
TACAAGTATATACTTTTCGACACACACTCCGACGCATTAAAACTAAGAGG
AATAAAGGGGCAGCGCCAAATGTCCGGCAAGCGAATCAACATTGTTCACG
GGGAAGTTCTCAAACCATGACGCAATACTTTTATGTGGACTACTGGTGTT
GCGTCATCTTCTCTCATCTGGTACCCAACGCACACGACTATGCTGCAGCA
AACTAACTGCGTAGAGGTTCCTCGGGTTGCCAGACGGACATAATCTTCCC
CTCCTCCTCTGGGGCTTGATGTTGCTTACGGCCATTACGTTGAAGCTCTG
TGCTGCGAACGGGTTATTATCTTGGAAGAATCACATTAATTTCGTGACTA
CTGTTGTACAAAATAATACGACCTGTCAAAAAGCAGCAGATAATATTGTC
GGGTTTTCTTAAACATTCAAAATTTATTGCATCATGTTGTTGTGATGATA
ATAATGTCGCAGTCTTGACTTGCTGAATGAACCATTCCAAGAGCTTAAGG
CTGATGTTGTAGCCGATCTGTGGATGGAGACTTGATTCATTCGAGTTATT
CGATGTACAACTTCATAATTCGTCTCTTCATTGTATTATAATATTAGTGT
CAGAGAGAGAACCAGCTCACATTCCATAGTTCACGGCACGGAGCAAAACA
TCATGCGGCATATTACATATATATTATATATATATATATATATATTTGTA
TTTTACGATTGATTGCCAAATACCACCACGCCGCCTAGAGTACGTAGTAT
GTAGTACGTACCATAAACAATGAGTAGTGCGTACTCGCTTTCTTTGCCCC
GACGGTTGAACTCGTTACAATCTACTTACAAGTTCAATAAGGTAAATAAT
AGCACTAGCTGTATACGCGTAGTACAAGTAGCAGGCCTGAGTTCGATTCA
GGAAAACAAGGGTAAACCAGAAAAAAAGTGTAACCATTCATTCGCCCATT
CATTGGATTACTACGGGGTGTAGTAATAAGAGAGCGGAAGTTGCATCGCG
ATAAAAATCGAAGGCATGATCGGGAAAGAGACGGGGCCCTTTCTACCAGA
GGCGGGAGGGCCAGCTGTGCGGAAGGTGATATATTGATTGGTATCCCAGC
ACGTTGGATGGCCCCATCGACAAAAATAGAAAAAACAGCATTATTTATTT
ACGCGACTGACCAATAATAAATCGCATACGGCGGTAGCACTACTATTTTG
CAGCTGAGCATGGTTGTATGTACCCAACGTATATTTGTATCTGATAAGTA
AGTTCTTGCTATTAATGATCGACCTCCTCCCTCTCGCCGTATTGCATCTA
ATTCCCCCTTTCGCAACGGCCTTCTTCCCAAACAGCTCGGCGTATTCTAC
ACGCACGAAGATAAGTTTACGTTGGTTAGGTGGTACCATCGGCGGTGCGT
GATCGCGCCCGAGTGCCTCAAGAACTCAATGGACCTATGCGGTATTGAAG
ACCTGCGTGGAGATGATCTTGAAGTGGTCCTCCGGTGGTTAGGGGTCGTC
GGGCCTGTTAAAGAGCGGGTATGGTCTGCTTGAAGCATTCAGTAACCATT
ACCCTCCTCCCTCCCGTAGAGGTAAACGCAAATGCTAGTGCGTGATAAAC
ATGATGGATGTAGGTGCACTGTAAGCTGGGCGTTCGTTATGGTGAAAATA
CCTTGATGAGGCGTGTTTTATTGCTCGAGTGTGCCTGAAGAAAGGGAGTT
GTTAATAGTTGTGATGTTGGATGCCTCTTTGGGAACTTTTTGTATGATGT
GTGTATAAGATAGGCACCAGATTCAGCCTAGGTTGAGAAAATGAGCACAT
GCATACATAGACTGACGCCGGACGGCACCGTCGAACCCATCCCGCGAGAT
CAAATGTTTTTTATAGAAGAATTGATGAACGATTATGTTCGCTTGATACG
TACAAACGTCAGCCCCAGTGTAACATTTAAATCTGGGTGACAATCCTACA
GCCAGGGTTTGGGCAGTAAACTACTCTCAGTAGTAGTAGCACCAGCCTCG
GCTTCTAAACAACTTAATAAGTTGGTAGTAGTAGTGAGCCGGTAGGCGAA
CTTACAAGCTGAACTTTGTGACGCATGAGATGTGACTCGATTCACCGATA
TGCGAGATTAGATAGTTGAGCGTTTGCAGGGACAATTTCAATATGTCCGC
AATCAATCTTGACTTAGTTTTCGAACAAACTTTGCGGTCGAAATTCTACC
ACAGAGATCCAGGAGGAGCATGGTATTACTTTCGAACGGTTACCTTGCCC
GTGACGTAGGCCCTGGAGTATATCCTTTTCTTTTCTTGAGAGCTCTGAAC
CCATACCACCGTACATAGATGTCGAACTAATTTAGGGTTGTAAGTTCTCA
GGAGCATGCCTTGAATGCTGCGTAATTATTTATATGGAGTATTCAGCAGC
ACATCATGTTTTACTCGCGTTTAGAGTTATGTAATTTGCTCCGTAAATAA
ATGCGCGTGTCTGCTTTTTGTAGAGTCCATGTTCGAGGTAGCGTAGTATT
AATAGTATGGATATTGCATTTTTTTCGCCTTTGTTTCAATTTCGAAGATC
TTCTACTTTTTTTTATTCTTGGTACTACTGCGAACGTCACTACCTTGCCT
TGTTCGACCAATCACACTGTGAAATTGTGGGACGTTAGGTTTGAGCTGCT
GGTAGATGACTGTTTTCGATTTTCCGGGAGATATGGCGAGACGCGGTGGC
CCACTCGAAGCTATATACACAACATTGCTAAGGCTGACTGGGCCTAGTTA
CATGACTGCTCTTCTCCCACGCTCTTTTCGAAAAGGCATGGGCAATGTGG
CGTCAAACATTGTTCGGGTTGCATCGCTTCCTATAGAATCCCGACCTTGT
CACGAGGGTTGGGTCGGCCTAGAAGAAATTTGAACTACTCTTAGAGTACT
ACATGCGAAGTGCGTATGATATATCGAGCTGCGAAATATTTCAAGGAAAA
AGGGCGTAGTTCCTAGAATCTCATCGCCTTACTGTTGCCAACAACGAGAT
GTGGAAGGCATAATATTTGAAGGTTTATAATATGTTTAAGGTTTTCATTG
AGAACATATATATATATATATATATACGTGTGTGTGTTCTTACCTGTGCT
ACGCCTACAGAAAAGAGGCGATAGTATTAAGACCGATGAAAGTAATTGAT
ATCGTCGTGTTAGAGCAGAGATAGTTGATCGCCACCCCTAAGTCTGGTTT
GCATAATAACAGGCGCACTGTCTCCGTGGTCGAGAACACGCCATTGTTGG
AACAGTCTCACGGAGGCAGAGTGGGAGGGGTAACACGTGTTATCGAACGG
GTGGCGGGGGGCATGTATGTATGTAGTATGCGGTGCTTGACACTTTCTTT
ATCTGTGCAGGACGTCTATGCTGTAATCTAGGTACTACTCCCATGCCGTA
CGCGTGCTAATGTTAATGTGTGTTCTGCCTTTTGTAGCTGCAATAGCTCG
ACATCCTTACGATCAATTTCGCTGTAATGTGCGTGCAGTACTATACCCTA
TTAATAGCTCTATAGCTCGGTATTATTAGTATCTTGAGAAGTCATTTGTA
TTAATGGCAAAATACGACTACTTCGTATAAACGCCCTTCTGTTGTTCTCA
CACCAATACCTGGGGACGCTTGTGGAGTGTTCAAAGGGACACATCAAGTG
ATATAATGCCCTCCCTCTGCTTTTGTGTGTCAGCTGAGAATTAACAAATA
AATCCCGCTGATGAAGATAACGTTCTCTAGCTGTCTACCGGACTGTCAAA
TAACTTTGCTTACATCTACTACATCTACTGC
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Coding sequence (CDS) from alignment at H-elongata_contig20336:661..5291-

>mRNA_H-elongata_contig20336.5776.1 ID=mRNA_H-elongata_contig20336.5776.1|Name=mRNA_H-elongata_contig20336.5776.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig20336:661..5291- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCAGTGGCCACTCGGAACTCGTCATCTACAAAAAAATCAACCTT
GAAGAAGCCGACCAATCCATCGTGGAGAAAGCTTGAACGCGACAGTTACG
TGATCGTTTCAGCAGCCAAAGGCACAGCGCGCTGCGGTGTATGCCAATCC
AAGATAAAGCGGGGCGAGATCAAGATGGCTGCAGTGGCCACTCGGAACTC
GTCATCTACAAAAAAATCAACCTTGAAGAAGCCGACCAATCCATCGTGGA
GAAAGCTTGAACGCGACAGTTACGTGATCGTTTCAGCAGCCAAAGGCACA
GCGCGCTGCGGTGTATGCCAATCCAAGATAAAGCGGGGCGAGATCAAGCT
CGGCGTATTCTACACGCACGAAGATAAGTTTACGTTGGTTAGGTGGTACC
ATCGGCGGTGCGTGATCGCGCCCGAGTGCCTCAAGAACTCAATGGACCTA
TGCGGTATTGAAGACCTGCGTGGAGATGATCTTGAAGTGGTCCTCCGGTG
GTTAGGGGTCGTCGGGCCTGTTAAAGAGCGGGTATGGTCTGCTTGACTCG
GCGTATTCTACACGCACGAAGATAAGTTTACGTTGGTTAGGTGGTACCAT
CGGCGGTGCGTGATCGCGCCCGAGTGCCTCAAGAACTCAATGGACCTATG
CGGTATTGAAGACCTGCGTGGAGATGATCTTGAAGTGGTCCTCCGGTGGT
TAGGGGTCGTCGGGCCTGTTAAAGAGCGGGTATGGTCTGCTTGA
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