mRNA_H-elongata_contig203343.5775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203343.5775.1
Unique NamemRNA_H-elongata_contig203343.5775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: A0A6H5JCQ3_9PHAE (Prolyl endopeptidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.330e-27
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNS 177
            DFVDCAEHLV+E +T PK LAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNS
Sbjct:  241 DFVDCAEHLVAEGVTSPKGLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNS 298          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: D8LFV2_ECTSI (Prolyl endopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.650e-27
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 1
Query:    1 KDFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNS 177
            +DFVDCAEHLV+E +T PK LAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNS
Sbjct:  582 QDFVDCAEHLVAEGVTSPKGLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNS 640          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: A0A7S3HEF6_9STRA (Prolyl endopeptidase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEF6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.820e-22
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DFV CAEHL+ E IT P +LA+ GRSAGGLL+G V+NMRPDLF  AVA VPFVD+MNS+
Sbjct:   60 DFVACAEHLIEEGITAPDRLAIEGRSAGGLLVGAVLNMRPDLFRVAVAGVPFVDVMNSM 118          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: W4F8P1_9STRA (Prolyl endopeptidase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4F8P1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.120e-20
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHLV+ K+T P +L   GRSAGGLL+G V+NMRPDLF AAVA VPFVD+MN++
Sbjct:   47 DFIACAEHLVATKVTSPSQLTCEGRSAGGLLVGAVLNMRPDLFTAAVAGVPFVDVMNTM 105          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: A0A5J4YN48_PORPP (Prolyl endopeptidase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN48_PORPP)

HSP 1 Score: 91.7 bits (226), Expect = 3.880e-20
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHL+ EK T P KLA+ GRSAGGLLIG V+NMRPDLFA A+A VPFVD+MN++
Sbjct:  672 DFIACAEHLIREKYTEPSKLAIEGRSAGGLLIGAVLNMRPDLFAVAIAGVPFVDVMNTM 730          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: A0A7S1FDB5_NOCSC (Prolyl endopeptidase n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FDB5_NOCSC)

HSP 1 Score: 91.3 bits (225), Expect = 5.290e-20
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHLV ++IT P KLA+ GRSAGGLL+G+V+NMRPDLF  AVA VPFVD+MN++
Sbjct:  586 DFIACAEHLVEKQITSPDKLAIEGRSAGGLLVGSVLNMRPDLFKVAVAGVPFVDVMNTM 644          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: A0A7S1EP84_9RHOD (Prolyl endopeptidase (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EP84_9RHOD)

HSP 1 Score: 90.5 bits (223), Expect = 5.760e-20
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHL++EK+T  +K+A+ GRSAGGLL+G VVNMRPDLF A +A VPFVD+MN++
Sbjct:  335 DFISCAEHLIAEKVTVAEKIAIEGRSAGGLLMGAVVNMRPDLFKAVIAGVPFVDVMNTM 393          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: UPI00039E214F (S9 family peptidase n=1 Tax=Halopseudomonas pelagia TaxID=553151 RepID=UPI00039E214F)

HSP 1 Score: 90.5 bits (223), Expect = 9.830e-20
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHLV  K+T P +L V G SAGGLLIGNV+N RP+LFAAAVADVPFVD+ N++
Sbjct:  497 DFIACAEHLVELKLTSPAQLVVAGGSAGGLLIGNVINQRPELFAAAVADVPFVDVFNTM 555          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: UPI001F4DA3B0 (S9 family peptidase n=1 Tax=Pseudomonas sp. A3.4 TaxID=2919919 RepID=UPI001F4DA3B0)

HSP 1 Score: 90.1 bits (222), Expect = 1.340e-19
Identity = 37/59 (62.71%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHL+ +++T P++L + G SAGGLLIGNV+N RP+LFAAA+ADVPFVD++N++
Sbjct:  505 DFIACAEHLIRQQLTQPQQLVIAGGSAGGLLIGNVINQRPELFAAAIADVPFVDVLNTM 563          
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Match: A0A257CYN3_9PSED (Peptidase S9 (Fragment) n=1 Tax=Pseudomonas sp. PGPPP3 TaxID=2015555 RepID=A0A257CYN3_9PSED)

HSP 1 Score: 88.2 bits (217), Expect = 2.530e-19
Identity = 37/59 (62.71%), Postives = 51/59 (86.44%), Query Frame = 1
Query:    4 DFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVADVPFVDLMNSV 180
            DF+ CAEHL++   TCP++LA+ G SAGGLLIG V+N RP+LFAAA+A+VPFVD++N++
Sbjct:  233 DFIACAEHLIASGYTCPQQLAISGGSAGGLLIGAVLNQRPELFAAAIAEVPFVDVLNTM 291          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203343.5775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCQ3_9PHAE1.330e-2791.38Prolyl endopeptidase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LFV2_ECTSI2.650e-2789.83Prolyl endopeptidase n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S3HEF6_9STRA4.820e-2271.19Prolyl endopeptidase (Fragment) n=1 Tax=Spumella e... [more]
W4F8P1_9STRA3.120e-2067.80Prolyl endopeptidase (Fragment) n=1 Tax=Aphanomyce... [more]
A0A5J4YN48_PORPP3.880e-2071.19Prolyl endopeptidase n=1 Tax=Porphyridium purpureu... [more]
A0A7S1FDB5_NOCSC5.290e-2069.49Prolyl endopeptidase n=1 Tax=Noctiluca scintillans... [more]
A0A7S1EP84_9RHOD5.760e-2066.10Prolyl endopeptidase (Fragment) n=1 Tax=Timspurcki... [more]
UPI00039E214F9.830e-2069.49S9 family peptidase n=1 Tax=Halopseudomonas pelagi... [more]
UPI001F4DA3B01.340e-1962.71S9 family peptidase n=1 Tax=Pseudomonas sp. A3.4 T... [more]
A0A257CYN3_9PSED2.530e-1962.71Peptidase S9 (Fragment) n=1 Tax=Pseudomonas sp. PG... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203343contigH-elongata_contig203343:794..979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D8LFV2
Preferred nameOPB
KEGG koko:K01354
KEGG Pathwayko05142,ko05143,map05142,map05143
EggNOG free text desc.serine-type exopeptidase activity
EggNOG OGsCOG1505@1,KOG2237@2759
EC3.4.21.83
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.13342-CDS-H-elongata_contig203343:793..9791622930143.13342-CDS-H-elongata_contig203343:793..979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203343 794..979 -
1691679297.6063936-CDS-H-elongata_contig203343:793..9791691679297.6063936-CDS-H-elongata_contig203343:793..979Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203343 794..979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203343.5775.1prot_H-elongata_contig203343.5775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203343 794..979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203343.5775.1

>prot_H-elongata_contig203343.5775.1 ID=prot_H-elongata_contig203343.5775.1|Name=mRNA_H-elongata_contig203343.5775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
KDFVDCAEHLVSEKITCPKKLAVCGRSAGGLLIGNVVNMRPDLFAAAVAD
VPFVDLMNSVI*
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mRNA from alignment at H-elongata_contig203343:794..979-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203343.5775.1 ID=mRNA_H-elongata_contig203343.5775.1|Name=mRNA_H-elongata_contig203343.5775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig203343:794..979- (Himanthalia elongata Himel1 dioecious)
AAAGACTTCGTGGACTGCGCGGAGCACCTGGTGAGCGAGAAGATTACCTG TCCCAAGAAGCTGGCAGTGTGCGGGCGTAGCGCGGGAGGGCTGCTGATCG GCAACGTGGTGAACATGCGGCCGGATCTGTTCGCCGCGGCGGTTGCGGAC GTCCCCTTCGTCGACCTTATGAATTCGGTGATTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig203343:794..979-

>mRNA_H-elongata_contig203343.5775.1 ID=mRNA_H-elongata_contig203343.5775.1|Name=mRNA_H-elongata_contig203343.5775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig203343:794..979- (Himanthalia elongata Himel1 dioecious)
AAAGACTTCGTGGACTGCGCGGAGCACCTGGTGAGCGAGAAGATTACCTG
TCCCAAGAAGCTGGCAGTGTGCGGGCGTAGCGCGGGAGGGCTGCTGATCG
GCAACGTGGTGAACATGCGGCCGGATCTGTTCGCCGCGGCGGTTGCGGAC
GTCCCCTTCGTCGACCTTATGAATTCGGTGATTTAAAAAGACTTCGTGGA
CTGCGCGGAGCACCTGGTGAGCGAGAAGATTACCTGTCCCAAGAAGCTGG
CAGTGTGCGGGCGTAGCGCGGGAGGGCTGCTGATCGGCAACGTGGTGAAC
ATGCGGCCGGATCTGTTCGCCGCGGCGGTTGCGGACGTCCCCTTCGTCGA
CCTTATGAATTCGGTGATTTAA
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