mRNA_H-elongata_contig203334.5774.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203334.5774.1
Unique NamemRNA_H-elongata_contig203334.5774.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203334.5774.1 vs. uniprot
Match: D7FVX9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.060e-8
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 SRQASEYADYLAKGPGKDGKKDVTMGFEAAAKGAMEPGFFADAMEM 138
            +++  EY D++A GPGKDGK+D  MG  AA+   M+P F  DAMEM
Sbjct:   98 AKKTKEYTDFIAAGPGKDGKRDAAMGLNAASASMMDPNFMKDAMEM 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203334.5774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVX9_ECTSI7.060e-852.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203334contigH-elongata_contig203334:170..842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002550.1
Exons3
Model size279
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203334.5774.1prot_H-elongata_contig203334.5774.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203334 170..842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.0452228-CDS-H-elongata_contig203334:169..2831622930143.0452228-CDS-H-elongata_contig203334:169..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203334 170..283 -
1691679297.5635824-CDS-H-elongata_contig203334:169..2831691679297.5635824-CDS-H-elongata_contig203334:169..283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203334 170..283 -
1622930143.0684266-CDS-H-elongata_contig203334:421..5101622930143.0684266-CDS-H-elongata_contig203334:421..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203334 422..510 -
1691679297.573263-CDS-H-elongata_contig203334:421..5101691679297.573263-CDS-H-elongata_contig203334:421..510Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203334 422..510 -
1622930143.0881188-CDS-H-elongata_contig203334:766..8421622930143.0881188-CDS-H-elongata_contig203334:766..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203334 767..842 -
1691679297.5864756-CDS-H-elongata_contig203334:766..8421691679297.5864756-CDS-H-elongata_contig203334:766..842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203334 767..842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203334.5774.1

>prot_H-elongata_contig203334.5774.1 ID=prot_H-elongata_contig203334.5774.1|Name=mRNA_H-elongata_contig203334.5774.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
SRQASEYADYLAKGPGKDGKKDVTMGFEAAAKGAMEPGFFADAMEMMKDP
AVMRQVEETMMNPDFQKQMKDLMEAPAVKQVLAEVRARNLNLL
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mRNA from alignment at H-elongata_contig203334:170..842-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203334.5774.1 ID=mRNA_H-elongata_contig203334.5774.1|Name=mRNA_H-elongata_contig203334.5774.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig203334:170..842- (Himanthalia elongata Himel1 dioecious)
TCTCGACAGGCGAGCGAGTACGCGGACTACCTCGCCAAGGGGCCTGGCAA
GGATGGCAAAAAGGACGTTACCATGGGTGGGTGGAGTTTCTTCGATGAAA
CAAAAATTATAAAGCTTAAGTTTTCAATACCAGACGCGGGTTTCATTCAA
ACTCAAAACGTTCATACTTTTAGATACGGTAGTACATAGCTTCCATGTCG
TCCACCATCCCCACACAAGAGAGGCTACTGCAACGGCGATGCTTGCGTCC
GGCCCCAGCGGTAGAGTATGCCCCTGATCGTCTTTTAAAAAAAGTCTTAC
TCCGATATCTGTTCGATTCTTAATTCTCTCAGGTTTCGAGGCCGCTGCGA
AAGGAGCAATGGAACCCGGGTTCTTTGCTGATGCGATGGAGATGATGAAG
GACCCCGCGGTTATGAGACAGGTACAGGTAGCTTTGGCATTCGCGTCTTC
GTTTGAAAGACCGATACCCTGCGTGTATTGTACACGTTGTGCGGTGGCAA
CCGCTGCTCAACATCATCATTTCTTGATTTTGCTGTGACGCAATGCTCGT
AACACACAGGTGGAGGAGACCATGATGAACCCGGACTTCCAGAAGCAGAT
GAAAGATCTCATGGAAGCGCCGGCCGTTAAACAAGTGCTTGCAGAGGTGC
GAGCAAGAAACTTAAACTTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig203334:170..842-

>mRNA_H-elongata_contig203334.5774.1 ID=mRNA_H-elongata_contig203334.5774.1|Name=mRNA_H-elongata_contig203334.5774.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig203334:170..842- (Himanthalia elongata Himel1 dioecious)
TCTCGACAGGCGAGCGAGTACGCGGACTACCTCGCCAAGGGGCCTGGCAA
GGATGGCAAAAAGGACGTTACCATGGTCTCGACAGGCGAGCGAGTACGCG
GACTACCTCGCCAAGGGGCCTGGCAAGGATGGCAAAAAGGACGTTACCAT
GGGTTTCGAGGCCGCTGCGAAAGGAGCAATGGAACCCGGGTTCTTTGCTG
ATGCGATGGAGATGATGAAGGACCCCGCGGTTATGAGACAGGTTTCGAGG
CCGCTGCGAAAGGAGCAATGGAACCCGGGTTCTTTGCTGATGCGATGGAG
ATGATGAAGGACCCCGCGGTTATGAGACAGGTGGAGGAGACCATGATGAA
CCCGGACTTCCAGAAGCAGATGAAAGATCTCATGGAAGCGCCGGCCGTTA
AACAAGTGCTTGCAGAGGTGCGAGCAAGAAACTTAAACTTGCTGGTGGAG
GAGACCATGATGAACCCGGACTTCCAGAAGCAGATGAAAGATCTCATGGA
AGCGCCGGCCGTTAAACAAGTGCTTGCAGAGGTGCGAGCAAGAAACTTAA
ACTTGCTG
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