mRNA_H-elongata_contig203286.5772.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203286.5772.1
Unique NamemRNA_H-elongata_contig203286.5772.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig203286.5772.1 vs. uniprot
Match: D7G626_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G626_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 1.680e-44
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 EMGDASDDEDMFPQVELPNTPDCTALTAVLRLYDHARLENKRTGVVSSRPGWGVEENIENWDGVYLDTDDRVVALDVDGDPENRQAVLIG 270
            EMGD  DDE+ F +VELP+TPDC ALTAVLRLYDHARLENKRTGV+SSRPGWGV+ENIENWDGVYLDT+DRVVALDVDGDPENRQAVLIG
Sbjct:  357 EMGD--DDEEEFVEVELPDTPDCKALTAVLRLYDHARLENKRTGVLSSRPGWGVDENIENWDGVYLDTEDRVVALDVDGDPENRQAVLIG 444
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203286.5772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G626_ECTSI1.680e-4487.78Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203286contigH-elongata_contig203286:72..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-11_004850.1
Exons2
Model size270
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203286.5772.1prot_H-elongata_contig203286.5772.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203286 72..742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.766385-CDS-H-elongata_contig203286:71..2311622930142.766385-CDS-H-elongata_contig203286:71..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203286 72..231 -
1691679297.383328-CDS-H-elongata_contig203286:71..2311691679297.383328-CDS-H-elongata_contig203286:71..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203286 72..231 -
1622930142.7809498-CDS-H-elongata_contig203286:635..7421622930142.7809498-CDS-H-elongata_contig203286:635..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203286 636..742 -
1691679297.393689-CDS-H-elongata_contig203286:635..7421691679297.393689-CDS-H-elongata_contig203286:635..742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203286 636..742 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.7950532-UTR-H-elongata_contig203286:742..7451622930142.7950532-UTR-H-elongata_contig203286:742..745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig203286 743..745 -
1691679297.4041264-UTR-H-elongata_contig203286:742..7451691679297.4041264-UTR-H-elongata_contig203286:742..745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig203286 743..745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203286.5772.1

>prot_H-elongata_contig203286.5772.1 ID=prot_H-elongata_contig203286.5772.1|Name=mRNA_H-elongata_contig203286.5772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MGDASDDEDMFPQVELPNTPDCTALTAVLRLYDHARLENKRTGVVSSRPG
WGVEENIENWDGVYLDTDDRVVALDVDGDPENRQAVLIG
back to top

mRNA from alignment at H-elongata_contig203286:72..745-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203286.5772.1 ID=mRNA_H-elongata_contig203286.5772.1|Name=mRNA_H-elongata_contig203286.5772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig203286:72..745- (Himanthalia elongata Himel1 dioecious)
GAAATGGGAGACGCAAGCGACGACGAGGACATGTTCCCGCAGGTGGAACT
CCCGAACACCCCGGACTGTACCGCCCTCACGGCTGTGCTCCGCCTCTACG
ATCACGCAAGGTACGATACAGAGGCGTTTTTTTTGCCGTTTGGGGGAGGA
TGGTGGGGGAGGGAAGTGTTTTAGGGCCTTGGCAAAAGAAGGTGCCGCAG
CGTGATGTTCCTCTCACACACACGGGCTTTTTACTCCTCCAAAAGGCTTT
CTTGATGGGGGAGGGGGGGTTATCTTCTCGCGTTCAGGGAGAGAGCCGCG
CTCCTGACGCACCTCAGGGATTGTGACGTAAAACGTACCGTAGGATTGTG
GTATTTTTTCCTTACATTTTTTGGGTGCGCGCGCGATCGAGCTCGGAGGG
CCCAAGAGCTCGTGGTTTTGACCTCCGCCCGGCGTTGCTTACTGTGCCAC
TGCTGCTTCTTGCTGCTGCTACTGTTCCGCGCTTGGTGTGTATCCACCCC
TCGTGATGGGGCAGGCTGGAGAACAAACGTACTGGAGTGGTCTCGAGCCG
GCCAGGGTGGGGAGTGGAGGAAAACATCGAGAACTGGGACGGCGTGTATC
TTGACACTGACGACCGTGTCGTTGCCCTAGACGTGGACGGTGACCCCGAG
AACAGACAGGCGGTTCTGATAGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig203286:72..745-

>mRNA_H-elongata_contig203286.5772.1 ID=mRNA_H-elongata_contig203286.5772.1|Name=mRNA_H-elongata_contig203286.5772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig203286:72..745- (Himanthalia elongata Himel1 dioecious)
ATGGGAGACGCAAGCGACGACGAGGACATGTTCCCGCAGGTGGAACTCCC
GAACACCCCGGACTGTACCGCCCTCACGGCTGTGCTCCGCCTCTACGATC
ACGCAAGATGGGAGACGCAAGCGACGACGAGGACATGTTCCCGCAGGTGG
AACTCCCGAACACCCCGGACTGTACCGCCCTCACGGCTGTGCTCCGCCTC
TACGATCACGCAAGGCTGGAGAACAAACGTACTGGAGTGGTCTCGAGCCG
GCCAGGGTGGGGAGTGGAGGAAAACATCGAGAACTGGGACGGCGTGTATC
TTGACACTGACGACCGTGTCGTTGCCCTAGACGTGGACGGTGACCCCGAG
AACAGACAGGCGGTTCTGATAGGTGCTGGAGAACAAACGTACTGGAGTGG
TCTCGAGCCGGCCAGGGTGGGGAGTGGAGGAAAACATCGAGAACTGGGAC
GGCGTGTATCTTGACACTGACGACCGTGTCGTTGCCCTAGACGTGGACGG
TGACCCCGAGAACAGACAGGCGGTTCTGATAGGT
back to top